Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4067

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt Dshi_4067: Dshi_4067 - hypothetical protein (RefSeq), at 42 to 731 _4067 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2 3at 0.049 kb on + strandat 0.228 kb on - strand, within Dshi_4067at 0.481 kb on - strand, within Dshi_4067at 0.545 kb on - strand, within Dshi_4067at 0.552 kb on - strand, within Dshi_4067at 0.553 kb on - strand, within Dshi_4067at 0.599 kb on - strand, within Dshi_4067at 0.682 kb on - strandat 0.689 kb on - strandat 0.791 kb on - strandat 0.803 kb on + strandat 0.861 kb on + strandat 0.862 kb on - strandat 0.869 kb on - strandat 0.880 kb on + strandat 0.880 kb on + strandat 0.880 kb on + strandat 0.884 kb on + strandat 0.902 kb on + strandat 0.903 kb on - strandat 0.908 kb on - strandat 0.913 kb on - strandat 0.920 kb on - strandat 0.927 kb on - strandat 0.942 kb on - strandat 0.955 kb on + strandat 0.955 kb on + strandat 0.960 kb on + strandat 0.960 kb on + strandat 0.963 kb on + strandat 0.963 kb on - strandat 0.965 kb on + strandat 0.965 kb on + strandat 0.971 kb on + strandat 0.973 kb on - strandat 0.973 kb on - strandat 1.039 kb on + strandat 1.039 kb on + strandat 1.039 kb on + strandat 1.039 kb on + strandat 1.040 kb on - strandat 1.041 kb on - strandat 1.047 kb on - strandat 1.047 kb on - strandat 1.047 kb on - strandat 1.054 kb on + strandat 1.056 kb on - strandat 1.062 kb on + strandat 1.068 kb on - strandat 1.070 kb on - strandat 1.070 kb on - strandat 1.070 kb on - strandat 1.072 kb on - strandat 1.087 kb on + strandat 1.106 kb on + strandat 1.107 kb on - strandat 1.107 kb on - strandat 1.110 kb on - strandat 1.114 kb on + strandat 1.115 kb on - strandat 1.116 kb on + strandat 1.121 kb on + strandat 1.127 kb on + strandat 1.129 kb on + strandat 1.129 kb on + strandat 1.135 kb on - strandat 1.140 kb on + strandat 1.140 kb on + strandat 1.146 kb on + strandat 1.153 kb on + strandat 1.153 kb on - strandat 1.155 kb on + strandat 1.155 kb on + strandat 1.163 kb on - strandat 1.163 kb on - strandat 1.163 kb on - strandat 1.163 kb on - strandat 1.166 kb on - strandat 1.185 kb on + strandat 1.188 kb on - strandat 1.190 kb on + strandat 1.193 kb on - strandat 1.193 kb on - strandat 1.200 kb on + strandat 1.208 kb on - strandat 1.238 kb on + strandat 1.254 kb on + strandat 1.254 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on + strandat 1.256 kb on - strandat 1.257 kb on - strandat 1.262 kb on - strandat 1.262 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.264 kb on - strandat 1.278 kb on - strandat 1.280 kb on + strandat 1.282 kb on + strandat 1.283 kb on + strandat 1.285 kb on + strandat 1.285 kb on + strandat 1.285 kb on + strandat 1.285 kb on + strandat 1.285 kb on + strandat 1.288 kb on - strandat 1.291 kb on - strandat 1.293 kb on - strandat 1.293 kb on - strandat 1.293 kb on - strandat 1.293 kb on - strandat 1.293 kb on - strandat 1.298 kb on - strandat 1.298 kb on - strandat 1.317 kb on + strandat 1.333 kb on + strandat 1.341 kb on - strandat 1.356 kb on - strandat 1.384 kb on + strandat 1.389 kb on + strandat 1.394 kb on + strandat 1.394 kb on + strandat 1.394 kb on + strandat 1.397 kb on - strandat 1.397 kb on - strandat 1.402 kb on + strandat 1.402 kb on + strandat 1.412 kb on + strandat 1.412 kb on - strandat 1.417 kb on + strandat 1.425 kb on - strandat 1.435 kb on - strandat 1.451 kb on + strandat 1.459 kb on - strandat 1.459 kb on - strandat 1.481 kb on + strandat 1.489 kb on - strandat 1.489 kb on - strandat 1.489 kb on - strandat 1.494 kb on + strandat 1.495 kb on - strandat 1.495 kb on - strandat 1.495 kb on - strandat 1.517 kb on + strandat 1.517 kb on + strandat 1.519 kb on - strandat 1.525 kb on - strandat 1.527 kb on + strandat 1.527 kb on + strandat 1.527 kb on + strandat 1.527 kb on + strandat 1.527 kb on + strandat 1.527 kb on + strandat 1.527 kb on + strandat 1.527 kb on + strandat 1.530 kb on - strandat 1.532 kb on + strandat 1.532 kb on + strandat 1.535 kb on - strandat 1.535 kb on - strandat 1.535 kb on - strandat 1.535 kb on - strandat 1.535 kb on - strandat 1.535 kb on - strandat 1.535 kb on - strandat 1.535 kb on - strandat 1.535 kb on - strandat 1.535 kb on - strandat 1.540 kb on - strandat 1.540 kb on - strandat 1.549 kb on + strandat 1.557 kb on + strandat 1.557 kb on + strandat 1.565 kb on - strandat 1.566 kb on - strandat 1.587 kb on - strandat 1.625 kb on - strandat 1.627 kb on + strandat 1.635 kb on - strandat 1.637 kb on + strandat 1.639 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.650 kb on + strandat 1.653 kb on - strandat 1.655 kb on + strandat 1.655 kb on - strandat 1.655 kb on - strandat 1.658 kb on - strandat 1.658 kb on - strandat 1.658 kb on - strandat 1.658 kb on - strandat 1.658 kb on - strandat 1.671 kb on + strandat 1.671 kb on + strandat 1.671 kb on + strandat 1.671 kb on + strandat 1.671 kb on + strandat 1.672 kb on + strandat 1.679 kb on - strandat 1.679 kb on - strandat 1.679 kb on - strandat 1.680 kb on - strandat 1.700 kb on - strandat 1.702 kb on - strandat 1.705 kb on - strandat 1.705 kb on - strandat 1.711 kb on + strandat 1.714 kb on - strandat 1.714 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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49 + +0.9
228 - Dshi_4067 0.27 +2.2
481 - Dshi_4067 0.64 +1.1
545 - Dshi_4067 0.73 +1.6
552 - Dshi_4067 0.74 +0.5
553 - Dshi_4067 0.74 +0.7
599 - Dshi_4067 0.81 -0.2
682 - +0.0
689 - +0.8
791 - +0.1
803 + +0.5
861 + +0.3
862 - +1.6
869 - +0.7
880 + -0.2
880 + -0.4
880 + -0.7
884 + -0.2
902 + +1.6
903 - +0.6
908 - +0.5
913 - -0.3
920 - +1.1
927 - -0.1
942 - +0.0
955 + -0.3
955 + -0.1
960 + +0.5
960 + +0.9
963 + +0.6
963 - -0.4
965 + -0.6
965 + +0.2
971 + -0.4
973 - -0.6
973 - +1.5
1,039 + +0.2
1,039 + -0.9
1,039 + +0.3
1,039 + +1.0
1,040 - -0.2
1,041 - +0.2
1,047 - +1.1
1,047 - -0.2
1,047 - +0.8
1,054 + -0.4
1,056 - +0.5
1,062 + +1.2
1,068 - +0.6
1,070 - -1.4
1,070 - +0.0
1,070 - +0.0
1,072 - +0.1
1,087 + +0.4
1,106 + +1.8
1,107 - -0.1
1,107 - -0.6
1,110 - +0.2
1,114 + +0.2
1,115 - -0.4
1,116 + +0.6
1,121 + -0.5
1,127 + +2.8
1,129 + -0.4
1,129 + +1.1
1,135 - -1.2
1,140 + +0.8
1,140 + -0.7
1,146 + -0.3
1,153 + -1.4
1,153 - +0.9
1,155 + -0.1
1,155 + -0.8
1,163 - +0.1
1,163 - +0.4
1,163 - -0.4
1,163 - -1.0
1,166 - +0.9
1,185 + +0.2
1,188 - +0.2
1,190 + +0.0
1,193 - +0.2
1,193 - +2.2
1,200 + +1.7
1,208 - -1.0
1,238 + +0.8
1,254 + -0.3
1,254 + +0.4
1,256 + -0.2
1,256 + +0.4
1,256 + +1.0
1,256 + -0.4
1,256 + -0.0
1,256 + +0.3
1,256 + -0.1
1,256 + -1.9
1,256 + +0.2
1,256 + +0.8
1,256 + -0.9
1,256 + -0.2
1,256 + +0.2
1,256 + +0.2
1,256 + -0.6
1,256 + -1.8
1,256 + -0.8
1,256 + -0.4
1,256 + +1.8
1,256 - +0.2
1,257 - -0.1
1,262 - -0.3
1,262 - +0.2
1,264 - +0.5
1,264 - -0.1
1,264 - -0.6
1,264 - -0.8
1,264 - -0.2
1,264 - +0.7
1,264 - -0.8
1,264 - +0.6
1,264 - -0.6
1,264 - -2.1
1,264 - +1.2
1,278 - +0.2
1,280 + +0.2
1,282 + -0.5
1,283 + -1.4
1,285 + -0.5
1,285 + +0.2
1,285 + +0.6
1,285 + -0.3
1,285 + +0.4
1,288 - -0.5
1,291 - +0.3
1,293 - +0.2
1,293 - -0.8
1,293 - -0.1
1,293 - -2.2
1,293 - +0.4
1,298 - +0.2
1,298 - +0.2
1,317 + -0.3
1,333 + -1.5
1,341 - -0.2
1,356 - -0.1
1,384 + +0.1
1,389 + -0.4
1,394 + +1.6
1,394 + +0.3
1,394 + +0.5
1,397 - -0.5
1,397 - +0.9
1,402 + +0.4
1,402 + -0.0
1,412 + -0.5
1,412 - -1.8
1,417 + +0.2
1,425 - +0.8
1,435 - -0.2
1,451 + +0.6
1,459 - +0.6
1,459 - +0.2
1,481 + +0.1
1,489 - -0.8
1,489 - +0.6
1,489 - +0.2
1,494 + +0.5
1,495 - -0.6
1,495 - +0.6
1,495 - -0.1
1,517 + +0.5
1,517 + -0.6
1,519 - -0.4
1,525 - +1.0
1,527 + -0.6
1,527 + -2.1
1,527 + +0.7
1,527 + +0.8
1,527 + -0.3
1,527 + -0.3
1,527 + +0.4
1,527 + +0.2
1,530 - -0.3
1,532 + +1.2
1,532 + +0.0
1,535 - +0.2
1,535 - -0.8
1,535 - -0.5
1,535 - +1.0
1,535 - +0.5
1,535 - -0.8
1,535 - +0.7
1,535 - -0.4
1,535 - +0.2
1,535 - +0.0
1,540 - +1.2
1,540 - -0.9
1,549 + +0.1
1,557 + +1.0
1,557 + +0.3
1,565 - +0.4
1,566 - -0.2
1,587 - -0.5
1,625 - +0.2
1,627 + -0.3
1,635 - +0.9
1,637 + +0.2
1,639 + -0.1
1,650 + -0.1
1,650 + -0.6
1,650 + -0.4
1,650 + -0.6
1,650 + -1.8
1,650 + -0.2
1,650 + -1.0
1,650 + -0.6
1,650 + +0.2
1,650 + -0.2
1,650 + -0.2
1,650 + +0.6
1,653 - +0.2
1,655 + +0.6
1,655 - -0.8
1,655 - -1.4
1,658 - +1.2
1,658 - -0.2
1,658 - +0.2
1,658 - +0.6
1,658 - -0.2
1,671 + +0.4
1,671 + -1.1
1,671 + +0.3
1,671 + +0.4
1,671 + +0.0
1,672 + +0.2
1,679 - +0.8
1,679 - +0.4
1,679 - -0.2
1,680 - +0.7
1,700 - -0.1
1,702 - +1.2
1,705 - -2.6
1,705 - +0.8
1,711 + -0.4
1,714 - -0.5
1,714 - -1.1

Or see this region's nucleotide sequence