Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1032

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1031 and Dshi_1032 are separated by 224 nucleotidesDshi_1032 and Dshi_1033 are separated by 81 nucleotidesDshi_1033 and Dshi_1034 overlap by 8 nucleotides Dshi_1031: Dshi_1031 - tryptophan synthase, beta subunit (RefSeq), at 1,064,459 to 1,065,691 _1031 Dshi_1032: Dshi_1032 - hypothetical protein (RefSeq), at 1,065,916 to 1,066,362 _1032 Dshi_1033: Dshi_1033 - hypothetical protein (RefSeq), at 1,066,444 to 1,066,914 _1033 Dshi_1034: Dshi_1034 - transcriptional regulator, LuxR family (RefSeq), at 1,066,907 to 1,067,449 _1034 Position (kb) 1065 1066 1067Strain fitness (log2 ratio) -1 0 1at 1065.951 kb on + strandat 1065.967 kb on + strand, within Dshi_1032at 1066.091 kb on + strand, within Dshi_1032at 1066.095 kb on + strand, within Dshi_1032at 1066.355 kb on - strandat 1066.534 kb on + strand, within Dshi_1033at 1066.542 kb on - strand, within Dshi_1033at 1066.599 kb on + strand, within Dshi_1033at 1067.089 kb on + strand, within Dshi_1034at 1067.234 kb on + strand, within Dshi_1034at 1067.273 kb on - strand, within Dshi_1034at 1067.354 kb on - strand, within Dshi_1034

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,065,951 + -0.3
1,065,967 + Dshi_1032 0.11 -0.4
1,066,091 + Dshi_1032 0.39 -0.7
1,066,095 + Dshi_1032 0.40 -0.5
1,066,355 - -0.3
1,066,534 + Dshi_1033 0.19 -0.3
1,066,542 - Dshi_1033 0.21 +0.0
1,066,599 + Dshi_1033 0.33 +0.4
1,067,089 + Dshi_1034 0.34 +0.8
1,067,234 + Dshi_1034 0.60 +0.3
1,067,273 - Dshi_1034 0.67 -1.0
1,067,354 - Dshi_1034 0.82 +0.0

Or see this region's nucleotide sequence