Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1031 and Dshi_1032 are separated by 224 nucleotides Dshi_1032 and Dshi_1033 are separated by 81 nucleotides Dshi_1033 and Dshi_1034 overlap by 8 nucleotides
Dshi_1031: Dshi_1031 - tryptophan synthase, beta subunit (RefSeq), at 1,064,459 to 1,065,691
_1031
Dshi_1032: Dshi_1032 - hypothetical protein (RefSeq), at 1,065,916 to 1,066,362
_1032
Dshi_1033: Dshi_1033 - hypothetical protein (RefSeq), at 1,066,444 to 1,066,914
_1033
Dshi_1034: Dshi_1034 - transcriptional regulator, LuxR family (RefSeq), at 1,066,907 to 1,067,449
_1034
Position (kb)
1065
1066
1067 Strain fitness (log2 ratio)
-1
0
1 at 1065.951 kb on + strand at 1065.967 kb on + strand, within Dshi_1032 at 1066.091 kb on + strand, within Dshi_1032 at 1066.095 kb on + strand, within Dshi_1032 at 1066.355 kb on - strand at 1066.534 kb on + strand, within Dshi_1033 at 1066.542 kb on - strand, within Dshi_1033 at 1066.599 kb on + strand, within Dshi_1033 at 1067.089 kb on + strand, within Dshi_1034 at 1067.234 kb on + strand, within Dshi_1034 at 1067.273 kb on - strand, within Dshi_1034 at 1067.354 kb on - strand, within Dshi_1034
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,065,951 + -0.3 1,065,967 + Dshi_1032 0.11 -0.4 1,066,091 + Dshi_1032 0.39 -0.7 1,066,095 + Dshi_1032 0.40 -0.5 1,066,355 - -0.3 1,066,534 + Dshi_1033 0.19 -0.3 1,066,542 - Dshi_1033 0.21 +0.0 1,066,599 + Dshi_1033 0.33 +0.4 1,067,089 + Dshi_1034 0.34 +0.8 1,067,234 + Dshi_1034 0.60 +0.3 1,067,273 - Dshi_1034 0.67 -1.0 1,067,354 - Dshi_1034 0.82 +0.0
Or see this region's nucleotide sequence