Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0758 and Dshi_0759 are separated by 82 nucleotides Dshi_0759 and Dshi_0760 are separated by 501 nucleotides Dshi_0760 and Dshi_0761 are separated by 26 nucleotides Dshi_0761 and Dshi_0762 are separated by 7 nucleotides
Dshi_0758: Dshi_0758 - transcriptional regulator, MarR family (RefSeq), at 768,813 to 769,301
_0758
Dshi_0759: Dshi_0759 - hypothetical protein (RefSeq), at 769,384 to 769,752
_0759
Dshi_0760: Dshi_0760 - hypothetical protein (RefSeq), at 770,254 to 770,736
_0760
Dshi_0761: Dshi_0761 - hypothetical protein (RefSeq), at 770,763 to 771,179
_0761
Dshi_0762: Dshi_0762 - aminotransferase class I and II (RefSeq), at 771,187 to 772,389
_0762
Position (kb) 770
771 Strain fitness (log2 ratio) -1
0
1 at 769.312 kb on + strand at 769.339 kb on + strand at 769.349 kb on + strand at 769.368 kb on - strand at 769.541 kb on + strand, within Dshi_0759 at 769.551 kb on - strand, within Dshi_0759 at 769.551 kb on - strand, within Dshi_0759 at 769.556 kb on + strand, within Dshi_0759 at 769.568 kb on + strand, within Dshi_0759 at 769.618 kb on - strand, within Dshi_0759 at 769.699 kb on + strand, within Dshi_0759 at 770.344 kb on + strand, within Dshi_0760 at 770.539 kb on - strand, within Dshi_0760 at 770.582 kb on - strand, within Dshi_0760 at 770.673 kb on - strand, within Dshi_0760 at 770.673 kb on - strand, within Dshi_0760 at 770.916 kb on - strand, within Dshi_0761 at 771.140 kb on + strand at 771.185 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 769,312 + -0.4 769,339 + +0.6 769,349 + -0.1 769,368 - -0.1 769,541 + Dshi_0759 0.43 -0.2 769,551 - Dshi_0759 0.45 -0.1 769,551 - Dshi_0759 0.45 +0.2 769,556 + Dshi_0759 0.47 +0.7 769,568 + Dshi_0759 0.50 -0.1 769,618 - Dshi_0759 0.63 +0.1 769,699 + Dshi_0759 0.85 +0.8 770,344 + Dshi_0760 0.19 -0.2 770,539 - Dshi_0760 0.59 -0.3 770,582 - Dshi_0760 0.68 -0.5 770,673 - Dshi_0760 0.87 +0.4 770,673 - Dshi_0760 0.87 -1.6 770,916 - Dshi_0761 0.37 -0.8 771,140 + -1.1 771,185 + -0.6
Or see this region's nucleotide sequence