Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0752 and Dshi_0753 overlap by 13 nucleotides Dshi_0753 and Dshi_0754 are separated by 9 nucleotides Dshi_0754 and Dshi_0755 are separated by 41 nucleotides
Dshi_0752: Dshi_0752 - protein of unknown function DUF1007 (RefSeq), at 762,957 to 763,637
_0752
Dshi_0753: Dshi_0753 - high-affinity nickel-transporter (RefSeq), at 763,625 to 764,581
_0753
Dshi_0754: Dshi_0754 - Methyltransferase type 11 (RefSeq), at 764,591 to 765,187
_0754
Dshi_0755: Dshi_0755 - MATE efflux family protein (RefSeq), at 765,229 to 766,599
_0755
Position (kb) 764
765
766 Strain fitness (log2 ratio) -1
0
1 at 763.606 kb on + strand at 764.018 kb on + strand, within Dshi_0753 at 764.130 kb on - strand, within Dshi_0753 at 764.187 kb on + strand, within Dshi_0753 at 764.637 kb on + strand at 764.673 kb on + strand, within Dshi_0754 at 764.674 kb on - strand, within Dshi_0754 at 764.703 kb on + strand, within Dshi_0754 at 764.865 kb on - strand, within Dshi_0754 at 764.923 kb on + strand, within Dshi_0754 at 765.214 kb on + strand at 765.421 kb on + strand, within Dshi_0755 at 765.456 kb on + strand, within Dshi_0755 at 765.463 kb on + strand, within Dshi_0755 at 765.605 kb on + strand, within Dshi_0755 at 765.624 kb on - strand, within Dshi_0755 at 765.653 kb on + strand, within Dshi_0755 at 765.659 kb on - strand, within Dshi_0755 at 765.812 kb on + strand, within Dshi_0755 at 765.890 kb on + strand, within Dshi_0755 at 766.108 kb on - strand, within Dshi_0755 at 766.108 kb on - strand, within Dshi_0755
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 763,606 + +0.3 764,018 + Dshi_0753 0.41 +0.2 764,130 - Dshi_0753 0.53 +0.6 764,187 + Dshi_0753 0.59 -0.8 764,637 + +0.5 764,673 + Dshi_0754 0.14 -0.5 764,674 - Dshi_0754 0.14 -0.4 764,703 + Dshi_0754 0.19 -0.2 764,865 - Dshi_0754 0.46 -0.8 764,923 + Dshi_0754 0.56 +0.0 765,214 + -0.1 765,421 + Dshi_0755 0.14 -0.2 765,456 + Dshi_0755 0.17 +0.2 765,463 + Dshi_0755 0.17 -0.1 765,605 + Dshi_0755 0.27 -0.8 765,624 - Dshi_0755 0.29 +0.3 765,653 + Dshi_0755 0.31 +0.0 765,659 - Dshi_0755 0.31 +0.2 765,812 + Dshi_0755 0.43 -0.1 765,890 + Dshi_0755 0.48 -0.1 766,108 - Dshi_0755 0.64 +0.5 766,108 - Dshi_0755 0.64 +0.3
Or see this region's nucleotide sequence