Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0676 and Dshi_0677 are separated by 12 nucleotides Dshi_0677 and Dshi_0678 are separated by 113 nucleotides Dshi_0678 and Dshi_0679 are separated by 8 nucleotides Dshi_0679 and Dshi_0680 are separated by 119 nucleotides
Dshi_0676: Dshi_0676 - beta-lactamase (RefSeq), at 681,643 to 683,742
_0676
Dshi_0677: Dshi_0677 - hypothetical protein (RefSeq), at 683,755 to 684,570
_0677
Dshi_0678: Dshi_0678 - glycosyl transferase family 14 (RefSeq), at 684,684 to 686,261
_0678
Dshi_0679: Dshi_0679 - histidine triad (HIT) protein (RefSeq), at 686,270 to 686,641
_0679
Dshi_0680: Dshi_0680 - phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq), at 686,761 to 687,834
_0680
Position (kb) 684
685
686
687 Strain fitness (log2 ratio) -2
-1
0
1 at 683.753 kb on + strand at 683.753 kb on + strand at 683.758 kb on + strand at 683.761 kb on - strand at 683.801 kb on - strand at 684.015 kb on - strand, within Dshi_0677 at 684.088 kb on + strand, within Dshi_0677 at 684.217 kb on - strand, within Dshi_0677 at 684.232 kb on - strand, within Dshi_0677 at 684.236 kb on - strand, within Dshi_0677 at 684.245 kb on + strand, within Dshi_0677 at 684.252 kb on + strand, within Dshi_0677 at 684.272 kb on + strand, within Dshi_0677 at 684.295 kb on - strand, within Dshi_0677 at 684.315 kb on + strand, within Dshi_0677 at 684.322 kb on + strand, within Dshi_0677 at 684.323 kb on - strand, within Dshi_0677 at 684.330 kb on - strand, within Dshi_0677 at 684.402 kb on - strand, within Dshi_0677 at 684.470 kb on + strand, within Dshi_0677 at 684.484 kb on - strand, within Dshi_0677 at 684.506 kb on + strand at 684.529 kb on - strand at 684.575 kb on + strand at 684.583 kb on - strand at 684.710 kb on - strand at 684.763 kb on - strand at 684.799 kb on + strand at 684.849 kb on + strand, within Dshi_0678 at 684.855 kb on + strand, within Dshi_0678 at 684.992 kb on + strand, within Dshi_0678 at 685.029 kb on - strand, within Dshi_0678 at 685.045 kb on + strand, within Dshi_0678 at 685.086 kb on - strand, within Dshi_0678 at 685.113 kb on - strand, within Dshi_0678 at 685.245 kb on - strand, within Dshi_0678 at 685.245 kb on - strand, within Dshi_0678 at 685.268 kb on - strand, within Dshi_0678 at 685.296 kb on + strand, within Dshi_0678 at 685.299 kb on - strand, within Dshi_0678 at 685.359 kb on - strand, within Dshi_0678 at 685.412 kb on - strand, within Dshi_0678 at 685.685 kb on + strand, within Dshi_0678 at 685.932 kb on + strand, within Dshi_0678 at 686.194 kb on - strand at 686.275 kb on - strand at 686.277 kb on + strand at 686.407 kb on - strand, within Dshi_0679 at 686.420 kb on + strand, within Dshi_0679 at 686.533 kb on + strand, within Dshi_0679 at 686.609 kb on + strand at 686.634 kb on - strand at 687.152 kb on - strand, within Dshi_0680
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 683,753 + +1.0 683,753 + +0.1 683,758 + -0.4 683,761 - +0.1 683,801 - -0.3 684,015 - Dshi_0677 0.32 -1.1 684,088 + Dshi_0677 0.41 +0.5 684,217 - Dshi_0677 0.57 -1.4 684,232 - Dshi_0677 0.58 -0.3 684,236 - Dshi_0677 0.59 +0.5 684,245 + Dshi_0677 0.60 +1.2 684,252 + Dshi_0677 0.61 +0.5 684,272 + Dshi_0677 0.63 +0.1 684,295 - Dshi_0677 0.66 -0.1 684,315 + Dshi_0677 0.69 +0.7 684,322 + Dshi_0677 0.69 +0.2 684,323 - Dshi_0677 0.70 -1.0 684,330 - Dshi_0677 0.70 +0.2 684,402 - Dshi_0677 0.79 -0.3 684,470 + Dshi_0677 0.88 -0.3 684,484 - Dshi_0677 0.89 -0.1 684,506 + -0.1 684,529 - -0.7 684,575 + -0.1 684,583 - -0.5 684,710 - -0.7 684,763 - -0.1 684,799 + +0.8 684,849 + Dshi_0678 0.10 +0.3 684,855 + Dshi_0678 0.11 -0.2 684,992 + Dshi_0678 0.20 -0.0 685,029 - Dshi_0678 0.22 -1.5 685,045 + Dshi_0678 0.23 -1.3 685,086 - Dshi_0678 0.25 -0.2 685,113 - Dshi_0678 0.27 -1.1 685,245 - Dshi_0678 0.36 -1.9 685,245 - Dshi_0678 0.36 -0.4 685,268 - Dshi_0678 0.37 -0.3 685,296 + Dshi_0678 0.39 -1.2 685,299 - Dshi_0678 0.39 -0.6 685,359 - Dshi_0678 0.43 -0.5 685,412 - Dshi_0678 0.46 -0.6 685,685 + Dshi_0678 0.63 -0.1 685,932 + Dshi_0678 0.79 +0.7 686,194 - +0.3 686,275 - +0.3 686,277 + -0.6 686,407 - Dshi_0679 0.37 +0.4 686,420 + Dshi_0679 0.40 +1.2 686,533 + Dshi_0679 0.71 +0.2 686,609 + -0.0 686,634 - -0.8 687,152 - Dshi_0680 0.36 -1.0
Or see this region's nucleotide sequence