Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0280

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0278 and Dshi_0279 are separated by 95 nucleotidesDshi_0279 and Dshi_0280 are separated by 291 nucleotidesDshi_0280 and Dshi_0281 are separated by 163 nucleotides Dshi_0278: Dshi_0278 - Ribosomal protein L25/L23 (RefSeq), at 280,745 to 281,041 _0278 Dshi_0279: Dshi_0279 - hypothetical protein (RefSeq), at 281,137 to 281,487 _0279 Dshi_0280: Dshi_0280 - hypothetical protein (RefSeq), at 281,779 to 282,159 _0280 Dshi_0281: Dshi_0281 - YHS domain protein (RefSeq), at 282,323 to 282,814 _0281 Position (kb) 281 282 283Strain fitness (log2 ratio) -2 -1 0 1 2 3at 281.108 kb on - strandat 281.415 kb on - strand, within Dshi_0279at 281.891 kb on - strand, within Dshi_0280at 281.904 kb on + strand, within Dshi_0280at 282.017 kb on - strand, within Dshi_0280at 282.137 kb on - strandat 282.166 kb on + strandat 282.194 kb on + strandat 282.200 kb on + strandat 282.231 kb on - strandat 282.231 kb on - strandat 282.242 kb on + strandat 282.270 kb on - strandat 282.316 kb on + strandat 282.321 kb on + strandat 282.321 kb on + strandat 282.329 kb on - strandat 282.403 kb on + strand, within Dshi_0281at 282.403 kb on + strand, within Dshi_0281at 282.508 kb on + strand, within Dshi_0281at 282.529 kb on - strand, within Dshi_0281at 282.620 kb on - strand, within Dshi_0281at 282.620 kb on - strand, within Dshi_0281at 282.644 kb on - strand, within Dshi_0281at 282.649 kb on - strand, within Dshi_0281at 282.651 kb on - strand, within Dshi_0281at 282.667 kb on + strand, within Dshi_0281at 282.735 kb on - strand, within Dshi_0281at 282.743 kb on + strand, within Dshi_0281at 282.743 kb on + strand, within Dshi_0281at 282.751 kb on - strand, within Dshi_0281at 282.755 kb on + strand, within Dshi_0281at 282.763 kb on - strand, within Dshi_0281at 282.769 kb on + strandat 282.789 kb on + strandat 282.804 kb on + strandat 282.810 kb on - strandat 282.816 kb on + strandat 282.832 kb on + strandat 282.840 kb on - strandat 282.879 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.890 kb on + strandat 282.896 kb on + strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.898 kb on - strandat 282.909 kb on + strandat 282.913 kb on + strandat 282.950 kb on + strandat 282.950 kb on + strandat 282.950 kb on + strandat 282.958 kb on - strandat 282.988 kb on - strandat 283.034 kb on - strandat 283.041 kb on + strandat 283.053 kb on - strandat 283.057 kb on - strandat 283.060 kb on + strandat 283.064 kb on + strandat 283.066 kb on + strandat 283.066 kb on + strandat 283.072 kb on - strandat 283.073 kb on - strandat 283.092 kb on + strandat 283.104 kb on + strandat 283.115 kb on + strandat 283.115 kb on + strandat 283.122 kb on + strandat 283.123 kb on - strandat 283.130 kb on - strandat 283.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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281,108 - -1.1
281,415 - Dshi_0279 0.79 -1.0
281,891 - Dshi_0280 0.29 -0.6
281,904 + Dshi_0280 0.33 -1.2
282,017 - Dshi_0280 0.62 +0.8
282,137 - -0.1
282,166 + +0.4
282,194 + +0.1
282,200 + +0.1
282,231 - +0.8
282,231 - -0.3
282,242 + +0.1
282,270 - -0.2
282,316 + -0.3
282,321 + -0.2
282,321 + +1.3
282,329 - +0.7
282,403 + Dshi_0281 0.16 -0.1
282,403 + Dshi_0281 0.16 -0.3
282,508 + Dshi_0281 0.38 -0.8
282,529 - Dshi_0281 0.42 -0.0
282,620 - Dshi_0281 0.60 -0.0
282,620 - Dshi_0281 0.60 -0.5
282,644 - Dshi_0281 0.65 +0.6
282,649 - Dshi_0281 0.66 -0.9
282,651 - Dshi_0281 0.67 -0.3
282,667 + Dshi_0281 0.70 -0.3
282,735 - Dshi_0281 0.84 +0.4
282,743 + Dshi_0281 0.85 +1.1
282,743 + Dshi_0281 0.85 +0.4
282,751 - Dshi_0281 0.87 -0.2
282,755 + Dshi_0281 0.88 +0.0
282,763 - Dshi_0281 0.89 +0.4
282,769 + +0.1
282,789 + +1.2
282,804 + +0.0
282,810 - +0.3
282,816 + +0.6
282,832 + -0.0
282,840 - -0.3
282,879 + -0.1
282,890 + -0.0
282,890 + +0.6
282,890 + -0.8
282,890 + -0.7
282,890 + +0.2
282,890 + +0.0
282,890 + -1.0
282,890 + +0.3
282,890 + -0.4
282,890 + -1.0
282,890 + -0.6
282,890 + +0.3
282,890 + -0.3
282,890 + -0.2
282,896 + -0.1
282,898 - -0.2
282,898 - +0.2
282,898 - +1.0
282,898 - +0.2
282,898 - -0.1
282,898 - -0.3
282,898 - +1.5
282,898 - +2.0
282,898 - -1.0
282,898 - +0.2
282,898 - +0.5
282,898 - +1.4
282,898 - +0.2
282,909 + -0.6
282,913 + +0.3
282,950 + -0.2
282,950 + +0.3
282,950 + -0.6
282,958 - +0.4
282,988 - -0.2
283,034 - -0.2
283,041 + +0.2
283,053 - -0.0
283,057 - +0.5
283,060 + -1.0
283,064 + +2.0
283,066 + +3.0
283,066 + +0.0
283,072 - +0.0
283,073 - +0.0
283,092 + -0.2
283,104 + +0.4
283,115 + +0.5
283,115 + +0.1
283,122 + +1.0
283,123 - +0.1
283,130 - +1.4
283,157 - -2.6

Or see this region's nucleotide sequence