Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0248 and Dshi_0249 are separated by 335 nucleotides Dshi_0249 and Dshi_0250 are separated by 45 nucleotides
Dshi_0248: Dshi_0248 - Quinone oxidoreductase putative PIG3 (RefSeq), at 244,793 to 245,779
_0248
Dshi_0249: Dshi_0249 - acriflavin resistance protein (RefSeq), at 246,115 to 246,699
_0249
Dshi_0250: Dshi_0250 - acriflavin resistance protein (RefSeq), at 246,745 to 249,237
_0250
Position (kb) 246
247 Strain fitness (log2 ratio) -1
0
1
2 at 245.128 kb on + strand, within Dshi_0248 at 245.201 kb on - strand, within Dshi_0248 at 245.349 kb on + strand, within Dshi_0248 at 245.349 kb on + strand, within Dshi_0248 at 245.357 kb on - strand, within Dshi_0248 at 245.421 kb on - strand, within Dshi_0248 at 245.442 kb on + strand, within Dshi_0248 at 245.526 kb on + strand, within Dshi_0248 at 245.542 kb on + strand, within Dshi_0248 at 245.633 kb on + strand, within Dshi_0248 at 245.674 kb on + strand, within Dshi_0248 at 245.687 kb on - strand at 245.692 kb on - strand at 245.917 kb on + strand at 245.980 kb on + strand at 246.045 kb on + strand at 246.156 kb on - strand at 246.205 kb on - strand, within Dshi_0249 at 246.253 kb on - strand, within Dshi_0249 at 246.301 kb on + strand, within Dshi_0249 at 246.340 kb on + strand, within Dshi_0249 at 246.348 kb on - strand, within Dshi_0249 at 246.417 kb on + strand, within Dshi_0249 at 246.459 kb on - strand, within Dshi_0249 at 246.508 kb on + strand, within Dshi_0249 at 246.675 kb on + strand at 246.715 kb on - strand at 246.717 kb on + strand at 246.725 kb on - strand at 246.788 kb on + strand at 246.798 kb on + strand at 246.811 kb on - strand at 246.811 kb on - strand at 246.825 kb on + strand at 246.900 kb on + strand at 246.910 kb on + strand at 246.950 kb on - strand at 247.002 kb on + strand, within Dshi_0250 at 247.002 kb on + strand, within Dshi_0250 at 247.221 kb on + strand, within Dshi_0250 at 247.229 kb on - strand, within Dshi_0250 at 247.273 kb on + strand, within Dshi_0250 at 247.274 kb on + strand, within Dshi_0250 at 247.338 kb on - strand, within Dshi_0250 at 247.360 kb on + strand, within Dshi_0250 at 247.392 kb on + strand, within Dshi_0250 at 247.501 kb on - strand, within Dshi_0250 at 247.524 kb on + strand, within Dshi_0250 at 247.678 kb on - strand, within Dshi_0250
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 245,128 + Dshi_0248 0.34 -1.7 245,201 - Dshi_0248 0.41 +0.2 245,349 + Dshi_0248 0.56 +0.5 245,349 + Dshi_0248 0.56 +0.1 245,357 - Dshi_0248 0.57 +0.1 245,421 - Dshi_0248 0.64 +0.4 245,442 + Dshi_0248 0.66 +1.0 245,526 + Dshi_0248 0.74 +1.1 245,542 + Dshi_0248 0.76 +0.2 245,633 + Dshi_0248 0.85 +0.8 245,674 + Dshi_0248 0.89 -1.4 245,687 - +0.7 245,692 - -0.4 245,917 + -0.2 245,980 + +0.0 246,045 + +0.9 246,156 - -0.8 246,205 - Dshi_0249 0.15 +0.6 246,253 - Dshi_0249 0.24 -0.3 246,301 + Dshi_0249 0.32 -0.1 246,340 + Dshi_0249 0.38 -1.7 246,348 - Dshi_0249 0.40 -0.2 246,417 + Dshi_0249 0.52 -0.5 246,459 - Dshi_0249 0.59 +0.1 246,508 + Dshi_0249 0.67 -0.9 246,675 + +0.0 246,715 - +1.1 246,717 + +0.6 246,725 - -0.4 246,788 + -0.2 246,798 + +0.3 246,811 - +0.5 246,811 - -0.3 246,825 + +0.6 246,900 + +0.4 246,910 + -0.6 246,950 - +0.6 247,002 + Dshi_0250 0.10 -0.1 247,002 + Dshi_0250 0.10 -0.8 247,221 + Dshi_0250 0.19 -0.0 247,229 - Dshi_0250 0.19 +0.8 247,273 + Dshi_0250 0.21 -0.4 247,274 + Dshi_0250 0.21 -1.6 247,338 - Dshi_0250 0.24 +0.4 247,360 + Dshi_0250 0.25 +0.3 247,392 + Dshi_0250 0.26 -0.2 247,501 - Dshi_0250 0.30 +2.3 247,524 + Dshi_0250 0.31 -0.4 247,678 - Dshi_0250 0.37 +0.2
Or see this region's nucleotide sequence