Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_810

Experiment: Vanillyl Alcohol 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_809 and Pf6N2E2_810 are separated by 160 nucleotidesPf6N2E2_810 and Pf6N2E2_811 are separated by 340 nucleotides Pf6N2E2_809 - Various polyols ABC transporter, permease component 1, at 941,163 to 942,098 _809 Pf6N2E2_810 - Various polyols ABC transporter, periplasmic substrate-binding protein, at 942,259 to 943,569 _810 Pf6N2E2_811 - Transcriptional regulator of various polyols utilization, AraC family, at 943,910 to 944,815 _811 Position (kb) 942 943 944Strain fitness (log2 ratio) -2 -1 0 1 2at 941.293 kb on + strand, within Pf6N2E2_809at 941.293 kb on + strand, within Pf6N2E2_809at 941.294 kb on - strand, within Pf6N2E2_809at 941.575 kb on - strand, within Pf6N2E2_809at 941.872 kb on + strand, within Pf6N2E2_809at 941.873 kb on - strand, within Pf6N2E2_809at 941.926 kb on + strand, within Pf6N2E2_809at 941.945 kb on - strand, within Pf6N2E2_809at 941.945 kb on - strand, within Pf6N2E2_809at 942.092 kb on + strandat 942.092 kb on + strandat 942.092 kb on + strandat 942.092 kb on + strandat 942.093 kb on - strandat 942.106 kb on + strandat 942.106 kb on + strandat 942.106 kb on + strandat 942.106 kb on + strandat 942.107 kb on - strandat 942.260 kb on + strandat 942.260 kb on + strandat 942.260 kb on + strandat 942.261 kb on - strandat 942.261 kb on - strandat 942.261 kb on - strandat 942.261 kb on - strandat 942.425 kb on + strand, within Pf6N2E2_810at 942.426 kb on - strand, within Pf6N2E2_810at 942.512 kb on + strand, within Pf6N2E2_810at 942.513 kb on - strand, within Pf6N2E2_810at 942.590 kb on + strand, within Pf6N2E2_810at 942.616 kb on - strand, within Pf6N2E2_810at 942.674 kb on + strand, within Pf6N2E2_810at 942.675 kb on - strand, within Pf6N2E2_810at 942.675 kb on - strand, within Pf6N2E2_810at 942.675 kb on - strand, within Pf6N2E2_810at 942.675 kb on - strand, within Pf6N2E2_810at 943.037 kb on + strand, within Pf6N2E2_810at 943.038 kb on - strand, within Pf6N2E2_810at 943.038 kb on - strand, within Pf6N2E2_810at 943.038 kb on - strand, within Pf6N2E2_810at 943.148 kb on + strand, within Pf6N2E2_810at 943.149 kb on - strand, within Pf6N2E2_810at 943.149 kb on - strand, within Pf6N2E2_810at 943.149 kb on - strand, within Pf6N2E2_810at 943.169 kb on + strand, within Pf6N2E2_810at 943.170 kb on - strand, within Pf6N2E2_810at 943.307 kb on + strand, within Pf6N2E2_810at 943.308 kb on - strand, within Pf6N2E2_810at 943.308 kb on - strand, within Pf6N2E2_810at 943.612 kb on + strandat 943.612 kb on + strandat 943.613 kb on - strandat 943.613 kb on - strandat 943.613 kb on - strandat 943.658 kb on - strandat 943.841 kb on + strandat 943.841 kb on + strandat 943.843 kb on + strandat 943.844 kb on - strandat 944.053 kb on + strand, within Pf6N2E2_811at 944.053 kb on + strand, within Pf6N2E2_811at 944.053 kb on + strand, within Pf6N2E2_811at 944.054 kb on - strand, within Pf6N2E2_811at 944.154 kb on + strand, within Pf6N2E2_811at 944.154 kb on + strand, within Pf6N2E2_811at 944.154 kb on + strand, within Pf6N2E2_811at 944.155 kb on - strand, within Pf6N2E2_811at 944.212 kb on - strand, within Pf6N2E2_811at 944.227 kb on - strand, within Pf6N2E2_811at 944.304 kb on + strand, within Pf6N2E2_811at 944.486 kb on + strand, within Pf6N2E2_811

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M
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941,293 + Pf6N2E2_809 0.14 -0.1
941,293 + Pf6N2E2_809 0.14 -0.3
941,294 - Pf6N2E2_809 0.14 -0.6
941,575 - Pf6N2E2_809 0.44 +0.5
941,872 + Pf6N2E2_809 0.76 +2.2
941,873 - Pf6N2E2_809 0.76 -1.0
941,926 + Pf6N2E2_809 0.82 -0.2
941,945 - Pf6N2E2_809 0.84 -1.1
941,945 - Pf6N2E2_809 0.84 +0.8
942,092 + +0.1
942,092 + -0.7
942,092 + +0.5
942,092 + -0.3
942,093 - +0.1
942,106 + -0.9
942,106 + +0.6
942,106 + -0.3
942,106 + -1.3
942,107 - -0.3
942,260 + +0.1
942,260 + +0.4
942,260 + -1.2
942,261 - -1.1
942,261 - +0.4
942,261 - -0.1
942,261 - +1.0
942,425 + Pf6N2E2_810 0.13 +0.0
942,426 - Pf6N2E2_810 0.13 +1.7
942,512 + Pf6N2E2_810 0.19 -1.6
942,513 - Pf6N2E2_810 0.19 -0.9
942,590 + Pf6N2E2_810 0.25 -2.5
942,616 - Pf6N2E2_810 0.27 +1.0
942,674 + Pf6N2E2_810 0.32 -1.3
942,675 - Pf6N2E2_810 0.32 +0.5
942,675 - Pf6N2E2_810 0.32 -2.0
942,675 - Pf6N2E2_810 0.32 -1.3
942,675 - Pf6N2E2_810 0.32 +1.2
943,037 + Pf6N2E2_810 0.59 -0.4
943,038 - Pf6N2E2_810 0.59 -2.0
943,038 - Pf6N2E2_810 0.59 -1.0
943,038 - Pf6N2E2_810 0.59 -1.0
943,148 + Pf6N2E2_810 0.68 -0.8
943,149 - Pf6N2E2_810 0.68 -0.4
943,149 - Pf6N2E2_810 0.68 -0.4
943,149 - Pf6N2E2_810 0.68 -0.8
943,169 + Pf6N2E2_810 0.69 -0.2
943,170 - Pf6N2E2_810 0.69 -0.5
943,307 + Pf6N2E2_810 0.80 -0.2
943,308 - Pf6N2E2_810 0.80 -0.4
943,308 - Pf6N2E2_810 0.80 -0.1
943,612 + +0.3
943,612 + +0.3
943,613 - -1.2
943,613 - +0.3
943,613 - -1.0
943,658 - +0.6
943,841 + +0.3
943,841 + +0.4
943,843 + -0.8
943,844 - -0.3
944,053 + Pf6N2E2_811 0.16 -0.4
944,053 + Pf6N2E2_811 0.16 -0.4
944,053 + Pf6N2E2_811 0.16 +1.0
944,054 - Pf6N2E2_811 0.16 -0.1
944,154 + Pf6N2E2_811 0.27 -0.8
944,154 + Pf6N2E2_811 0.27 +2.1
944,154 + Pf6N2E2_811 0.27 +0.3
944,155 - Pf6N2E2_811 0.27 +0.0
944,212 - Pf6N2E2_811 0.33 -0.2
944,227 - Pf6N2E2_811 0.35 +1.9
944,304 + Pf6N2E2_811 0.43 -1.0
944,486 + Pf6N2E2_811 0.64 -1.2

Or see this region's nucleotide sequence