Experiment: Vanillyl Alcohol 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_795 and Pf6N2E2_796 are separated by 428 nucleotides Pf6N2E2_796 and Pf6N2E2_797 are separated by 15 nucleotides
Pf6N2E2_795 - ABC transporter ATP-binding protein uup, at 925,389 to 926,954
_795
Pf6N2E2_796 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 927,383 to 928,276
_796
Pf6N2E2_797 - ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD, at 928,292 to 930,259
_797
Position (kb) 927
928
929 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 926.594 kb on - strand, within Pf6N2E2_795 at 926.964 kb on - strand at 926.964 kb on - strand at 926.964 kb on - strand at 926.969 kb on + strand at 926.970 kb on - strand at 926.970 kb on - strand at 926.984 kb on + strand at 927.006 kb on - strand at 927.006 kb on - strand at 927.009 kb on + strand at 927.009 kb on + strand at 927.010 kb on - strand at 927.023 kb on + strand at 927.035 kb on - strand at 927.102 kb on - strand at 927.119 kb on - strand at 927.138 kb on - strand at 927.185 kb on + strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.188 kb on + strand at 927.188 kb on + strand at 927.188 kb on + strand at 927.189 kb on - strand at 927.189 kb on - strand at 927.189 kb on - strand at 927.205 kb on - strand at 927.205 kb on - strand at 927.232 kb on + strand at 927.233 kb on - strand at 927.233 kb on - strand at 927.293 kb on + strand at 927.294 kb on - strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.407 kb on + strand at 927.408 kb on - strand at 927.408 kb on - strand at 927.408 kb on - strand at 927.425 kb on + strand at 927.426 kb on - strand at 927.455 kb on - strand at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.515 kb on + strand, within Pf6N2E2_796 at 927.516 kb on - strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.753 kb on + strand, within Pf6N2E2_796 at 927.754 kb on - strand, within Pf6N2E2_796 at 927.754 kb on - strand, within Pf6N2E2_796 at 927.771 kb on + strand, within Pf6N2E2_796 at 927.852 kb on - strand, within Pf6N2E2_796 at 927.908 kb on + strand, within Pf6N2E2_796 at 927.908 kb on + strand, within Pf6N2E2_796 at 927.909 kb on - strand, within Pf6N2E2_796 at 927.932 kb on + strand, within Pf6N2E2_796 at 927.932 kb on + strand, within Pf6N2E2_796 at 927.983 kb on + strand, within Pf6N2E2_796 at 928.006 kb on + strand, within Pf6N2E2_796 at 928.007 kb on - strand, within Pf6N2E2_796 at 928.166 kb on + strand, within Pf6N2E2_796 at 928.174 kb on - strand, within Pf6N2E2_796 at 928.217 kb on + strand at 928.217 kb on + strand at 928.217 kb on + strand at 928.217 kb on + strand at 928.218 kb on - strand at 928.220 kb on + strand at 928.221 kb on - strand at 928.264 kb on + strand at 928.265 kb on - strand at 928.265 kb on - strand at 928.287 kb on + strand at 928.288 kb on - strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.410 kb on + strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.543 kb on - strand, within Pf6N2E2_797 at 928.630 kb on + strand, within Pf6N2E2_797 at 928.630 kb on + strand, within Pf6N2E2_797 at 928.631 kb on - strand, within Pf6N2E2_797 at 929.103 kb on + strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.104 kb on - strand, within Pf6N2E2_797 at 929.106 kb on + strand, within Pf6N2E2_797
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M remove 926,594 - Pf6N2E2_795 0.77 -0.3 926,964 - +1.9 926,964 - -0.6 926,964 - +0.2 926,969 + +0.1 926,970 - -0.2 926,970 - -0.1 926,984 + +0.3 927,006 - -0.7 927,006 - +0.3 927,009 + +0.2 927,009 + +0.0 927,010 - +0.4 927,023 + -0.4 927,035 - -0.9 927,102 - -0.8 927,119 - +1.4 927,138 - -0.5 927,185 + +0.0 927,186 - -0.4 927,186 - +0.3 927,188 + -0.6 927,188 + -1.3 927,188 + +0.4 927,189 - -1.0 927,189 - -1.0 927,189 - +0.2 927,205 - +1.1 927,205 - -0.6 927,232 + +0.0 927,233 - +1.6 927,233 - +0.5 927,293 + -0.4 927,294 - -1.4 927,407 + -0.6 927,407 + +0.9 927,407 + +0.4 927,407 + -0.3 927,407 + -0.1 927,408 - -1.0 927,408 - +0.6 927,408 - -1.6 927,425 + +0.0 927,426 - +0.3 927,455 - -1.0 927,515 + Pf6N2E2_796 0.15 +0.9 927,515 + Pf6N2E2_796 0.15 +2.4 927,515 + Pf6N2E2_796 0.15 +0.4 927,515 + Pf6N2E2_796 0.15 +2.9 927,516 - Pf6N2E2_796 0.15 +0.3 927,753 + Pf6N2E2_796 0.41 +0.8 927,753 + Pf6N2E2_796 0.41 +0.1 927,753 + Pf6N2E2_796 0.41 +0.6 927,754 - Pf6N2E2_796 0.41 +0.1 927,754 - Pf6N2E2_796 0.41 +0.6 927,771 + Pf6N2E2_796 0.43 -2.5 927,852 - Pf6N2E2_796 0.52 +0.2 927,908 + Pf6N2E2_796 0.59 +1.6 927,908 + Pf6N2E2_796 0.59 -1.7 927,909 - Pf6N2E2_796 0.59 +0.4 927,932 + Pf6N2E2_796 0.61 +1.4 927,932 + Pf6N2E2_796 0.61 +1.2 927,983 + Pf6N2E2_796 0.67 -0.2 928,006 + Pf6N2E2_796 0.70 +0.9 928,007 - Pf6N2E2_796 0.70 +2.6 928,166 + Pf6N2E2_796 0.88 +1.6 928,174 - Pf6N2E2_796 0.88 +0.5 928,217 + +1.6 928,217 + -0.4 928,217 + -1.4 928,217 + +0.1 928,218 - -0.5 928,220 + -0.7 928,221 - +0.0 928,264 + -0.4 928,265 - +0.6 928,265 - -0.8 928,287 + +1.4 928,288 - -1.8 928,410 + +0.2 928,410 + -0.4 928,410 + -0.1 928,410 + +1.4 928,410 + -1.7 928,410 + -0.9 928,410 + +0.2 928,410 + -0.2 928,410 + +1.6 928,411 - +0.0 928,411 - -1.0 928,411 - +0.6 928,411 - +0.6 928,411 - -0.3 928,411 - +0.6 928,411 - +0.2 928,411 - -0.7 928,543 - Pf6N2E2_797 0.13 +0.0 928,630 + Pf6N2E2_797 0.17 -1.0 928,630 + Pf6N2E2_797 0.17 -0.6 928,631 - Pf6N2E2_797 0.17 +1.6 929,103 + Pf6N2E2_797 0.41 -1.0 929,104 - Pf6N2E2_797 0.41 -0.8 929,104 - Pf6N2E2_797 0.41 +1.0 929,104 - Pf6N2E2_797 0.41 +0.0 929,104 - Pf6N2E2_797 0.41 -1.0 929,104 - Pf6N2E2_797 0.41 -2.6 929,106 + Pf6N2E2_797 0.41 +0.1
Or see this region's nucleotide sequence