Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5716

Experiment: Vanillyl Alcohol 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5714 and Pf6N2E2_5715 overlap by 4 nucleotidesPf6N2E2_5715 and Pf6N2E2_5716 are separated by 114 nucleotidesPf6N2E2_5716 and Pf6N2E2_5717 are separated by 162 nucleotidesPf6N2E2_5717 and Pf6N2E2_5718 overlap by 1 nucleotides Pf6N2E2_5714 - Flavoprotein WrbA, at 6,529,891 to 6,530,496 _5714 Pf6N2E2_5715 - Arsenate reductase (EC 1.20.4.1), at 6,530,493 to 6,530,846 _5715 Pf6N2E2_5716 - Cytochrome c-type biogenesis protein ResA, at 6,530,961 to 6,531,428 _5716 Pf6N2E2_5717 - Heat shock protein, at 6,531,591 to 6,531,995 _5717 Pf6N2E2_5718 - FIG00953240: hypothetical protein, at 6,531,995 to 6,532,429 _5718 Position (kb) 6530 6531 6532Strain fitness (log2 ratio) -2 -1 0 1 2at 6530.228 kb on + strand, within Pf6N2E2_5714at 6530.229 kb on - strand, within Pf6N2E2_5714at 6530.229 kb on - strand, within Pf6N2E2_5714at 6530.229 kb on - strand, within Pf6N2E2_5714at 6530.466 kb on - strandat 6530.466 kb on - strandat 6530.468 kb on + strandat 6530.468 kb on + strandat 6530.468 kb on + strandat 6530.468 kb on + strandat 6530.468 kb on + strandat 6530.469 kb on - strandat 6530.483 kb on + strandat 6530.483 kb on + strandat 6530.484 kb on - strandat 6530.484 kb on - strandat 6530.650 kb on + strand, within Pf6N2E2_5715at 6530.827 kb on + strandat 6530.828 kb on - strandat 6530.828 kb on - strandat 6530.867 kb on - strandat 6530.879 kb on - strandat 6530.883 kb on + strandat 6530.883 kb on + strandat 6530.883 kb on + strandat 6530.883 kb on + strandat 6530.883 kb on + strandat 6530.883 kb on + strandat 6530.884 kb on - strandat 6530.884 kb on - strandat 6530.884 kb on - strandat 6530.884 kb on - strandat 6530.994 kb on - strandat 6531.031 kb on - strand, within Pf6N2E2_5716at 6531.099 kb on + strand, within Pf6N2E2_5716at 6531.099 kb on + strand, within Pf6N2E2_5716at 6531.099 kb on + strand, within Pf6N2E2_5716at 6531.327 kb on + strand, within Pf6N2E2_5716at 6531.327 kb on + strand, within Pf6N2E2_5716at 6531.327 kb on + strand, within Pf6N2E2_5716at 6531.327 kb on + strand, within Pf6N2E2_5716at 6531.327 kb on + strand, within Pf6N2E2_5716at 6531.327 kb on + strand, within Pf6N2E2_5716at 6531.327 kb on + strand, within Pf6N2E2_5716at 6531.328 kb on - strand, within Pf6N2E2_5716at 6531.328 kb on - strand, within Pf6N2E2_5716at 6531.328 kb on - strand, within Pf6N2E2_5716at 6531.328 kb on - strand, within Pf6N2E2_5716at 6531.328 kb on - strand, within Pf6N2E2_5716at 6531.328 kb on - strand, within Pf6N2E2_5716at 6531.328 kb on - strand, within Pf6N2E2_5716at 6531.328 kb on - strand, within Pf6N2E2_5716at 6531.328 kb on - strand, within Pf6N2E2_5716at 6531.501 kb on + strandat 6531.502 kb on - strandat 6531.502 kb on - strandat 6531.502 kb on - strandat 6531.502 kb on - strandat 6531.502 kb on - strandat 6531.645 kb on + strand, within Pf6N2E2_5717at 6531.645 kb on + strand, within Pf6N2E2_5717at 6531.645 kb on + strand, within Pf6N2E2_5717at 6531.646 kb on - strand, within Pf6N2E2_5717at 6531.646 kb on - strand, within Pf6N2E2_5717at 6531.789 kb on - strand, within Pf6N2E2_5717at 6531.868 kb on + strand, within Pf6N2E2_5717at 6531.868 kb on + strand, within Pf6N2E2_5717at 6531.869 kb on - strand, within Pf6N2E2_5717at 6531.907 kb on + strand, within Pf6N2E2_5717at 6531.907 kb on + strand, within Pf6N2E2_5717at 6531.908 kb on - strand, within Pf6N2E2_5717at 6531.908 kb on - strand, within Pf6N2E2_5717at 6531.908 kb on - strand, within Pf6N2E2_5717at 6531.908 kb on - strand, within Pf6N2E2_5717at 6531.917 kb on + strand, within Pf6N2E2_5717at 6531.918 kb on - strand, within Pf6N2E2_5717at 6531.918 kb on - strand, within Pf6N2E2_5717at 6531.931 kb on - strand, within Pf6N2E2_5717at 6531.931 kb on - strand, within Pf6N2E2_5717at 6531.931 kb on - strand, within Pf6N2E2_5717at 6531.931 kb on - strand, within Pf6N2E2_5717

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M
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6,530,228 + Pf6N2E2_5714 0.56 +0.5
6,530,229 - Pf6N2E2_5714 0.56 +1.1
6,530,229 - Pf6N2E2_5714 0.56 +0.6
6,530,229 - Pf6N2E2_5714 0.56 +0.8
6,530,466 - -1.2
6,530,466 - +0.4
6,530,468 + -1.0
6,530,468 + -1.3
6,530,468 + -0.9
6,530,468 + +0.6
6,530,468 + +0.0
6,530,469 - -1.2
6,530,483 + +0.7
6,530,483 + -0.7
6,530,484 - -1.0
6,530,484 - +0.8
6,530,650 + Pf6N2E2_5715 0.44 +0.9
6,530,827 + -1.3
6,530,828 - -0.4
6,530,828 - +1.9
6,530,867 - -0.3
6,530,879 - -0.9
6,530,883 + -1.3
6,530,883 + -0.4
6,530,883 + +1.1
6,530,883 + +0.8
6,530,883 + +1.2
6,530,883 + -0.9
6,530,884 - +0.3
6,530,884 - -1.6
6,530,884 - -0.0
6,530,884 - +1.6
6,530,994 - +0.9
6,531,031 - Pf6N2E2_5716 0.15 -0.3
6,531,099 + Pf6N2E2_5716 0.29 -1.1
6,531,099 + Pf6N2E2_5716 0.29 -0.3
6,531,099 + Pf6N2E2_5716 0.29 -0.4
6,531,327 + Pf6N2E2_5716 0.78 -1.4
6,531,327 + Pf6N2E2_5716 0.78 -1.4
6,531,327 + Pf6N2E2_5716 0.78 -0.1
6,531,327 + Pf6N2E2_5716 0.78 -0.3
6,531,327 + Pf6N2E2_5716 0.78 -0.1
6,531,327 + Pf6N2E2_5716 0.78 -0.1
6,531,327 + Pf6N2E2_5716 0.78 -0.9
6,531,328 - Pf6N2E2_5716 0.78 -0.9
6,531,328 - Pf6N2E2_5716 0.78 +0.4
6,531,328 - Pf6N2E2_5716 0.78 +0.1
6,531,328 - Pf6N2E2_5716 0.78 +0.0
6,531,328 - Pf6N2E2_5716 0.78 -1.8
6,531,328 - Pf6N2E2_5716 0.78 -0.6
6,531,328 - Pf6N2E2_5716 0.78 +0.5
6,531,328 - Pf6N2E2_5716 0.78 +0.3
6,531,328 - Pf6N2E2_5716 0.78 -0.3
6,531,501 + -0.1
6,531,502 - +1.1
6,531,502 - -0.3
6,531,502 - -0.5
6,531,502 - +0.9
6,531,502 - -1.2
6,531,645 + Pf6N2E2_5717 0.13 -0.7
6,531,645 + Pf6N2E2_5717 0.13 +0.4
6,531,645 + Pf6N2E2_5717 0.13 +1.5
6,531,646 - Pf6N2E2_5717 0.14 +0.9
6,531,646 - Pf6N2E2_5717 0.14 +1.4
6,531,789 - Pf6N2E2_5717 0.49 +1.1
6,531,868 + Pf6N2E2_5717 0.68 +0.6
6,531,868 + Pf6N2E2_5717 0.68 -1.1
6,531,869 - Pf6N2E2_5717 0.69 -0.2
6,531,907 + Pf6N2E2_5717 0.78 -0.0
6,531,907 + Pf6N2E2_5717 0.78 -2.3
6,531,908 - Pf6N2E2_5717 0.78 -1.1
6,531,908 - Pf6N2E2_5717 0.78 +0.2
6,531,908 - Pf6N2E2_5717 0.78 +0.9
6,531,908 - Pf6N2E2_5717 0.78 +0.1
6,531,917 + Pf6N2E2_5717 0.80 -1.0
6,531,918 - Pf6N2E2_5717 0.81 -1.2
6,531,918 - Pf6N2E2_5717 0.81 -1.4
6,531,931 - Pf6N2E2_5717 0.84 +0.3
6,531,931 - Pf6N2E2_5717 0.84 +0.2
6,531,931 - Pf6N2E2_5717 0.84 -0.1
6,531,931 - Pf6N2E2_5717 0.84 -0.6

Or see this region's nucleotide sequence