Experiment: Vanillyl Alcohol 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4919 and Pf6N2E2_4920 are separated by 46 nucleotides Pf6N2E2_4920 and Pf6N2E2_4921 are separated by 16 nucleotides Pf6N2E2_4921 and Pf6N2E2_4922 are separated by 301 nucleotides Pf6N2E2_4922 and Pf6N2E2_4923 overlap by 4 nucleotides
Pf6N2E2_4919 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 5,673,324 to 5,674,457
_4919
Pf6N2E2_4920 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 5,674,504 to 5,675,169
_4920
Pf6N2E2_4921 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 5,675,186 to 5,676,277
_4921
Pf6N2E2_4922 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 5,676,579 to 5,677,055
_4922
Pf6N2E2_4923 - Transcription termination protein NusB, at 5,677,052 to 5,677,552
_4923
Position (kb)
5675
5676
5677 Strain fitness (log2 ratio)
-2
-1
0
1 at 5674.453 kb on + strand at 5674.453 kb on + strand at 5674.453 kb on + strand at 5674.453 kb on + strand at 5674.454 kb on - strand at 5674.454 kb on - strand at 5674.454 kb on - strand at 5674.454 kb on - strand at 5674.455 kb on + strand at 5674.455 kb on + strand at 5675.155 kb on + strand at 5675.197 kb on + strand at 5675.197 kb on + strand at 5675.197 kb on + strand at 5675.198 kb on - strand at 5675.198 kb on - strand at 5675.479 kb on + strand, within Pf6N2E2_4921 at 5675.798 kb on - strand, within Pf6N2E2_4921 at 5676.140 kb on + strand, within Pf6N2E2_4921 at 5676.140 kb on + strand, within Pf6N2E2_4921 at 5676.140 kb on + strand, within Pf6N2E2_4921 at 5676.140 kb on + strand, within Pf6N2E2_4921 at 5676.140 kb on + strand, within Pf6N2E2_4921 at 5676.140 kb on + strand, within Pf6N2E2_4921 at 5676.190 kb on + strand at 5676.223 kb on + strand at 5676.223 kb on + strand at 5676.255 kb on + strand at 5676.260 kb on + strand at 5676.260 kb on + strand at 5676.260 kb on + strand at 5676.260 kb on + strand at 5676.260 kb on + strand at 5676.260 kb on + strand at 5676.298 kb on + strand at 5676.298 kb on + strand at 5676.298 kb on + strand at 5676.298 kb on + strand at 5676.319 kb on + strand at 5676.319 kb on + strand at 5676.319 kb on + strand at 5676.319 kb on + strand at 5676.319 kb on + strand at 5676.319 kb on + strand at 5676.319 kb on + strand at 5676.398 kb on + strand at 5676.510 kb on + strand at 5676.510 kb on + strand at 5676.522 kb on + strand at 5676.522 kb on + strand at 5676.522 kb on + strand at 5676.522 kb on + strand at 5676.522 kb on + strand at 5676.525 kb on + strand at 5676.525 kb on + strand at 5676.544 kb on + strand at 5676.564 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M remove 5,674,453 + +0.3 5,674,453 + +0.0 5,674,453 + +0.0 5,674,453 + +1.1 5,674,454 - +1.2 5,674,454 - +0.6 5,674,454 - -0.0 5,674,454 - -0.3 5,674,455 + +1.0 5,674,455 + +0.3 5,675,155 + -0.9 5,675,197 + +0.5 5,675,197 + +0.1 5,675,197 + +0.4 5,675,198 - +1.1 5,675,198 - -0.3 5,675,479 + Pf6N2E2_4921 0.27 -1.7 5,675,798 - Pf6N2E2_4921 0.56 +0.0 5,676,140 + Pf6N2E2_4921 0.87 +1.1 5,676,140 + Pf6N2E2_4921 0.87 -0.8 5,676,140 + Pf6N2E2_4921 0.87 -0.6 5,676,140 + Pf6N2E2_4921 0.87 -2.3 5,676,140 + Pf6N2E2_4921 0.87 -0.7 5,676,140 + Pf6N2E2_4921 0.87 -0.5 5,676,190 + -0.4 5,676,223 + -0.7 5,676,223 + +0.7 5,676,255 + +0.1 5,676,260 + +0.1 5,676,260 + -0.0 5,676,260 + -0.7 5,676,260 + +0.5 5,676,260 + -0.9 5,676,260 + -0.3 5,676,298 + -0.3 5,676,298 + +1.0 5,676,298 + -0.6 5,676,298 + +0.5 5,676,319 + +0.1 5,676,319 + +0.1 5,676,319 + -0.6 5,676,319 + -0.3 5,676,319 + +1.3 5,676,319 + -2.3 5,676,319 + -1.2 5,676,398 + -2.3 5,676,510 + -0.1 5,676,510 + -1.0 5,676,522 + +0.5 5,676,522 + +0.8 5,676,522 + -0.7 5,676,522 + +0.1 5,676,522 + -0.7 5,676,525 + -0.6 5,676,525 + +0.8 5,676,544 + -0.0 5,676,564 + -0.8
Or see this region's nucleotide sequence