Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_407

Experiment: Vanillyl Alcohol 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_406 and Pf6N2E2_407 are separated by 91 nucleotidesPf6N2E2_407 and Pf6N2E2_408 are separated by 468 nucleotides Pf6N2E2_406 - hypothetical protein, at 476,143 to 477,102 _406 Pf6N2E2_407 - Phosphohydrolase (MutT/nudix family protein), at 477,194 to 477,529 _407 Pf6N2E2_408 - Transcriptional regulators, LysR family, at 477,998 to 478,864 _408 Position (kb) 477 478Strain fitness (log2 ratio) -2 -1 0 1 2at 476.235 kb on - strandat 476.250 kb on + strand, within Pf6N2E2_406at 476.251 kb on - strand, within Pf6N2E2_406at 476.251 kb on - strand, within Pf6N2E2_406at 476.330 kb on + strand, within Pf6N2E2_406at 476.331 kb on - strand, within Pf6N2E2_406at 476.331 kb on - strand, within Pf6N2E2_406at 476.386 kb on + strand, within Pf6N2E2_406at 476.386 kb on + strand, within Pf6N2E2_406at 476.386 kb on + strand, within Pf6N2E2_406at 476.386 kb on + strand, within Pf6N2E2_406at 476.386 kb on + strand, within Pf6N2E2_406at 476.386 kb on + strand, within Pf6N2E2_406at 476.568 kb on - strand, within Pf6N2E2_406at 476.728 kb on + strand, within Pf6N2E2_406at 476.728 kb on + strand, within Pf6N2E2_406at 476.730 kb on + strand, within Pf6N2E2_406at 476.730 kb on + strand, within Pf6N2E2_406at 476.731 kb on - strand, within Pf6N2E2_406at 476.748 kb on + strand, within Pf6N2E2_406at 476.748 kb on + strand, within Pf6N2E2_406at 476.806 kb on - strand, within Pf6N2E2_406at 476.971 kb on + strand, within Pf6N2E2_406at 476.971 kb on + strand, within Pf6N2E2_406at 476.971 kb on + strand, within Pf6N2E2_406at 476.972 kb on - strand, within Pf6N2E2_406at 476.972 kb on - strand, within Pf6N2E2_406at 477.009 kb on - strandat 477.009 kb on - strandat 477.045 kb on + strandat 477.178 kb on + strandat 477.178 kb on + strandat 477.221 kb on + strandat 477.257 kb on + strand, within Pf6N2E2_407at 477.301 kb on + strand, within Pf6N2E2_407at 477.302 kb on - strand, within Pf6N2E2_407at 477.437 kb on + strand, within Pf6N2E2_407at 477.437 kb on + strand, within Pf6N2E2_407at 477.437 kb on + strand, within Pf6N2E2_407at 477.438 kb on - strand, within Pf6N2E2_407at 477.438 kb on - strand, within Pf6N2E2_407at 477.487 kb on - strand, within Pf6N2E2_407at 477.532 kb on + strandat 477.606 kb on + strandat 477.606 kb on + strandat 477.606 kb on + strandat 477.606 kb on + strandat 477.606 kb on + strandat 477.606 kb on + strandat 477.606 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.658 kb on + strandat 477.659 kb on - strandat 477.659 kb on - strandat 477.659 kb on - strandat 477.659 kb on - strandat 477.659 kb on - strandat 477.659 kb on - strandat 477.659 kb on - strandat 477.659 kb on - strandat 477.662 kb on + strandat 477.662 kb on + strandat 477.662 kb on + strandat 477.663 kb on - strandat 477.750 kb on - strandat 477.750 kb on - strandat 477.903 kb on - strandat 477.927 kb on + strandat 477.927 kb on + strandat 477.927 kb on + strandat 477.927 kb on + strandat 477.927 kb on + strandat 477.927 kb on + strandat 477.927 kb on + strandat 477.928 kb on - strandat 477.928 kb on - strandat 477.928 kb on - strandat 477.928 kb on - strandat 477.928 kb on - strandat 477.928 kb on - strandat 477.928 kb on - strandat 477.928 kb on - strandat 477.928 kb on - strandat 477.995 kb on + strandat 477.995 kb on + strandat 477.995 kb on + strandat 477.996 kb on - strandat 477.996 kb on - strandat 477.996 kb on - strandat 477.996 kb on - strandat 477.996 kb on - strandat 477.999 kb on + strandat 477.999 kb on + strandat 478.000 kb on - strandat 478.029 kb on - strandat 478.074 kb on + strandat 478.074 kb on + strandat 478.074 kb on + strandat 478.113 kb on + strand, within Pf6N2E2_408at 478.114 kb on - strand, within Pf6N2E2_408at 478.149 kb on + strand, within Pf6N2E2_408at 478.149 kb on + strand, within Pf6N2E2_408at 478.150 kb on - strand, within Pf6N2E2_408at 478.150 kb on - strand, within Pf6N2E2_408at 478.213 kb on - strand, within Pf6N2E2_408at 478.315 kb on + strand, within Pf6N2E2_408at 478.316 kb on - strand, within Pf6N2E2_408at 478.391 kb on + strand, within Pf6N2E2_408at 478.392 kb on - strand, within Pf6N2E2_408at 478.519 kb on - strand, within Pf6N2E2_408

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M
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476,235 - -0.1
476,250 + Pf6N2E2_406 0.11 +1.0
476,251 - Pf6N2E2_406 0.11 -0.0
476,251 - Pf6N2E2_406 0.11 -0.4
476,330 + Pf6N2E2_406 0.19 +0.9
476,331 - Pf6N2E2_406 0.20 +0.6
476,331 - Pf6N2E2_406 0.20 -0.1
476,386 + Pf6N2E2_406 0.25 -1.2
476,386 + Pf6N2E2_406 0.25 -0.2
476,386 + Pf6N2E2_406 0.25 +0.6
476,386 + Pf6N2E2_406 0.25 -0.0
476,386 + Pf6N2E2_406 0.25 -0.8
476,386 + Pf6N2E2_406 0.25 +0.5
476,568 - Pf6N2E2_406 0.44 -1.1
476,728 + Pf6N2E2_406 0.61 -1.4
476,728 + Pf6N2E2_406 0.61 -0.6
476,730 + Pf6N2E2_406 0.61 +0.7
476,730 + Pf6N2E2_406 0.61 +0.0
476,731 - Pf6N2E2_406 0.61 -0.6
476,748 + Pf6N2E2_406 0.63 -0.9
476,748 + Pf6N2E2_406 0.63 -0.9
476,806 - Pf6N2E2_406 0.69 -0.4
476,971 + Pf6N2E2_406 0.86 -0.2
476,971 + Pf6N2E2_406 0.86 +0.1
476,971 + Pf6N2E2_406 0.86 -0.4
476,972 - Pf6N2E2_406 0.86 +1.1
476,972 - Pf6N2E2_406 0.86 -0.9
477,009 - +0.7
477,009 - +0.3
477,045 + +0.7
477,178 + -1.4
477,178 + -1.7
477,221 + +0.1
477,257 + Pf6N2E2_407 0.19 -1.1
477,301 + Pf6N2E2_407 0.32 -0.8
477,302 - Pf6N2E2_407 0.32 +0.0
477,437 + Pf6N2E2_407 0.72 -2.3
477,437 + Pf6N2E2_407 0.72 -2.0
477,437 + Pf6N2E2_407 0.72 +0.1
477,438 - Pf6N2E2_407 0.73 -1.4
477,438 - Pf6N2E2_407 0.73 +0.9
477,487 - Pf6N2E2_407 0.87 -0.1
477,532 + +0.3
477,606 + +0.3
477,606 + -1.3
477,606 + +0.5
477,606 + -0.7
477,606 + +0.4
477,606 + +0.2
477,606 + -0.9
477,658 + +0.0
477,658 + +0.1
477,658 + -0.3
477,658 + +0.0
477,658 + +0.2
477,658 + +1.2
477,658 + -2.7
477,658 + -0.7
477,658 + -0.1
477,658 + -0.9
477,658 + +1.2
477,658 + -0.2
477,658 + +0.7
477,659 - -1.5
477,659 - +0.6
477,659 - -0.3
477,659 - +2.3
477,659 - -0.3
477,659 - +1.0
477,659 - -1.7
477,659 - -0.5
477,662 + +0.0
477,662 + +0.2
477,662 + -1.5
477,663 - -0.0
477,750 - -2.2
477,750 - +1.6
477,903 - +0.6
477,927 + -0.4
477,927 + +0.3
477,927 + -0.3
477,927 + -0.6
477,927 + +0.5
477,927 + -0.5
477,927 + -1.3
477,928 - -0.3
477,928 - -1.4
477,928 - +0.8
477,928 - -0.1
477,928 - +0.3
477,928 - -0.4
477,928 - -0.7
477,928 - +1.1
477,928 - +0.6
477,995 + +1.2
477,995 + -0.9
477,995 + +0.3
477,996 - +0.3
477,996 - +0.3
477,996 - +0.4
477,996 - -1.1
477,996 - +0.5
477,999 + +0.2
477,999 + +0.1
478,000 - +0.6
478,029 - +0.3
478,074 + +0.9
478,074 + +0.7
478,074 + +0.0
478,113 + Pf6N2E2_408 0.13 -1.7
478,114 - Pf6N2E2_408 0.13 -0.5
478,149 + Pf6N2E2_408 0.17 -2.1
478,149 + Pf6N2E2_408 0.17 +0.6
478,150 - Pf6N2E2_408 0.18 +1.0
478,150 - Pf6N2E2_408 0.18 -0.2
478,213 - Pf6N2E2_408 0.25 -1.6
478,315 + Pf6N2E2_408 0.37 +1.2
478,316 - Pf6N2E2_408 0.37 +0.9
478,391 + Pf6N2E2_408 0.45 +0.7
478,392 - Pf6N2E2_408 0.45 -0.5
478,519 - Pf6N2E2_408 0.60 +0.4

Or see this region's nucleotide sequence