Experiment: Vanillyl Alcohol 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2815 and Pf6N2E2_2816 overlap by 1 nucleotides Pf6N2E2_2816 and Pf6N2E2_2817 are separated by 52 nucleotides Pf6N2E2_2817 and Pf6N2E2_2818 are separated by 155 nucleotides Pf6N2E2_2818 and Pf6N2E2_2819 are separated by 17 nucleotides
Pf6N2E2_2815 - Putative hemolysin, at 3,302,710 to 3,303,465
_2815
Pf6N2E2_2816 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 3,303,465 to 3,304,259
_2816
Pf6N2E2_2817 - Acyl carrier protein phosphodiesterase (EC 3.1.4.14), at 3,304,312 to 3,304,896
_2817
Pf6N2E2_2818 - Transcriptional regulator, ArsR family, at 3,305,052 to 3,305,354
_2818
Pf6N2E2_2819 - Putative sugar transport protein, at 3,305,372 to 3,306,538
_2819
Position (kb)
3304
3305 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3303.331 kb on + strand, within Pf6N2E2_2815 at 3303.332 kb on - strand, within Pf6N2E2_2815 at 3303.332 kb on - strand, within Pf6N2E2_2815 at 3303.437 kb on - strand at 3303.483 kb on + strand at 3303.484 kb on - strand at 3303.484 kb on - strand at 3303.502 kb on + strand at 3303.502 kb on + strand at 3303.503 kb on - strand at 3303.511 kb on + strand at 3303.512 kb on - strand at 3304.313 kb on + strand at 3304.313 kb on + strand at 3304.313 kb on + strand at 3304.313 kb on + strand at 3304.313 kb on + strand at 3304.313 kb on + strand at 3304.394 kb on + strand, within Pf6N2E2_2817 at 3304.394 kb on + strand, within Pf6N2E2_2817 at 3304.394 kb on + strand, within Pf6N2E2_2817 at 3304.395 kb on - strand, within Pf6N2E2_2817 at 3304.395 kb on - strand, within Pf6N2E2_2817 at 3304.526 kb on + strand, within Pf6N2E2_2817 at 3304.527 kb on - strand, within Pf6N2E2_2817 at 3304.527 kb on - strand, within Pf6N2E2_2817 at 3304.527 kb on - strand, within Pf6N2E2_2817 at 3304.527 kb on - strand, within Pf6N2E2_2817 at 3304.577 kb on - strand, within Pf6N2E2_2817 at 3304.623 kb on - strand, within Pf6N2E2_2817 at 3304.745 kb on + strand, within Pf6N2E2_2817 at 3304.745 kb on + strand, within Pf6N2E2_2817 at 3304.745 kb on + strand, within Pf6N2E2_2817 at 3304.746 kb on - strand, within Pf6N2E2_2817 at 3304.746 kb on - strand, within Pf6N2E2_2817 at 3304.746 kb on - strand, within Pf6N2E2_2817 at 3304.746 kb on - strand, within Pf6N2E2_2817 at 3304.746 kb on - strand, within Pf6N2E2_2817 at 3304.746 kb on - strand, within Pf6N2E2_2817 at 3304.746 kb on - strand, within Pf6N2E2_2817 at 3304.746 kb on - strand, within Pf6N2E2_2817 at 3304.746 kb on - strand, within Pf6N2E2_2817 at 3304.797 kb on - strand, within Pf6N2E2_2817 at 3304.889 kb on + strand at 3304.890 kb on - strand at 3304.890 kb on - strand at 3304.890 kb on - strand at 3304.909 kb on - strand at 3304.909 kb on - strand at 3304.909 kb on - strand at 3305.031 kb on + strand at 3305.032 kb on - strand at 3305.075 kb on - strand at 3305.077 kb on + strand at 3305.642 kb on + strand, within Pf6N2E2_2819 at 3305.643 kb on - strand, within Pf6N2E2_2819 at 3305.874 kb on + strand, within Pf6N2E2_2819 at 3305.874 kb on + strand, within Pf6N2E2_2819 at 3305.874 kb on + strand, within Pf6N2E2_2819 at 3305.875 kb on - strand, within Pf6N2E2_2819 at 3305.875 kb on - strand, within Pf6N2E2_2819
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M remove 3,303,331 + Pf6N2E2_2815 0.82 +0.5 3,303,332 - Pf6N2E2_2815 0.82 +0.1 3,303,332 - Pf6N2E2_2815 0.82 +0.1 3,303,437 - +0.3 3,303,483 + -0.1 3,303,484 - +0.9 3,303,484 - +0.7 3,303,502 + -0.7 3,303,502 + -0.8 3,303,503 - +0.1 3,303,511 + +0.5 3,303,512 - +0.5 3,304,313 + +0.6 3,304,313 + -0.7 3,304,313 + +0.2 3,304,313 + -0.6 3,304,313 + +0.2 3,304,313 + -0.9 3,304,394 + Pf6N2E2_2817 0.14 -0.3 3,304,394 + Pf6N2E2_2817 0.14 -2.3 3,304,394 + Pf6N2E2_2817 0.14 +0.9 3,304,395 - Pf6N2E2_2817 0.14 +0.8 3,304,395 - Pf6N2E2_2817 0.14 -0.6 3,304,526 + Pf6N2E2_2817 0.37 +1.2 3,304,527 - Pf6N2E2_2817 0.37 +1.2 3,304,527 - Pf6N2E2_2817 0.37 +0.2 3,304,527 - Pf6N2E2_2817 0.37 -0.9 3,304,527 - Pf6N2E2_2817 0.37 -1.1 3,304,577 - Pf6N2E2_2817 0.45 +1.0 3,304,623 - Pf6N2E2_2817 0.53 +0.3 3,304,745 + Pf6N2E2_2817 0.74 +0.4 3,304,745 + Pf6N2E2_2817 0.74 +0.7 3,304,745 + Pf6N2E2_2817 0.74 -0.6 3,304,746 - Pf6N2E2_2817 0.74 -0.9 3,304,746 - Pf6N2E2_2817 0.74 +1.5 3,304,746 - Pf6N2E2_2817 0.74 +0.5 3,304,746 - Pf6N2E2_2817 0.74 +0.1 3,304,746 - Pf6N2E2_2817 0.74 -0.9 3,304,746 - Pf6N2E2_2817 0.74 -0.2 3,304,746 - Pf6N2E2_2817 0.74 +0.0 3,304,746 - Pf6N2E2_2817 0.74 +0.2 3,304,746 - Pf6N2E2_2817 0.74 -0.6 3,304,797 - Pf6N2E2_2817 0.83 -1.2 3,304,889 + -0.5 3,304,890 - -1.0 3,304,890 - -0.1 3,304,890 - -0.7 3,304,909 - +2.9 3,304,909 - +0.4 3,304,909 - -0.0 3,305,031 + +0.8 3,305,032 - -0.5 3,305,075 - -0.7 3,305,077 + -0.3 3,305,642 + Pf6N2E2_2819 0.23 -0.3 3,305,643 - Pf6N2E2_2819 0.23 +0.1 3,305,874 + Pf6N2E2_2819 0.43 -0.8 3,305,874 + Pf6N2E2_2819 0.43 -0.4 3,305,874 + Pf6N2E2_2819 0.43 +0.9 3,305,875 - Pf6N2E2_2819 0.43 -0.2 3,305,875 - Pf6N2E2_2819 0.43 -1.0
Or see this region's nucleotide sequence