Experiment: Vanillyl Alcohol 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2789 and Pf6N2E2_2790 are separated by 221 nucleotides Pf6N2E2_2790 and Pf6N2E2_2791 are separated by 269 nucleotides Pf6N2E2_2791 and Pf6N2E2_2792 overlap by 41 nucleotides Pf6N2E2_2792 and Pf6N2E2_2793 are separated by 120 nucleotides Pf6N2E2_2793 and Pf6N2E2_2794 are separated by 176 nucleotides
Pf6N2E2_2789 - L-lysine permease, at 3,279,104 to 3,279,733
_2789
Pf6N2E2_2790 - Helix-turn-helix motif, at 3,279,955 to 3,280,317
_2790
Pf6N2E2_2791 - FIG00954883: hypothetical protein, at 3,280,587 to 3,280,838
_2791
Pf6N2E2_2792 - Antitoxin 1, at 3,280,798 to 3,281,214
_2792
Pf6N2E2_2793 - hypothetical protein, at 3,281,335 to 3,281,481
_2793
Pf6N2E2_2794 - putative membrane protein, at 3,281,658 to 3,282,062
_2794
Position (kb)
3280
3281 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3279.602 kb on + strand, within Pf6N2E2_2789 at 3279.603 kb on - strand, within Pf6N2E2_2789 at 3279.613 kb on - strand, within Pf6N2E2_2789 at 3279.613 kb on - strand, within Pf6N2E2_2789 at 3279.732 kb on - strand at 3279.732 kb on - strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.799 kb on + strand at 3279.800 kb on - strand at 3279.800 kb on - strand at 3279.803 kb on + strand at 3279.840 kb on + strand at 3279.881 kb on + strand at 3279.930 kb on - strand at 3279.955 kb on - strand at 3279.955 kb on - strand at 3280.105 kb on + strand, within Pf6N2E2_2790 at 3280.257 kb on + strand, within Pf6N2E2_2790 at 3280.258 kb on - strand, within Pf6N2E2_2790 at 3280.288 kb on + strand at 3280.288 kb on + strand at 3280.356 kb on + strand at 3280.356 kb on + strand at 3280.357 kb on - strand at 3280.357 kb on - strand at 3280.397 kb on + strand at 3280.429 kb on - strand at 3280.472 kb on + strand at 3280.472 kb on + strand at 3280.526 kb on - strand at 3280.526 kb on - strand at 3280.552 kb on + strand at 3280.554 kb on + strand at 3280.607 kb on - strand at 3280.607 kb on - strand at 3280.607 kb on - strand at 3280.632 kb on + strand, within Pf6N2E2_2791 at 3280.633 kb on - strand, within Pf6N2E2_2791 at 3280.633 kb on - strand, within Pf6N2E2_2791 at 3280.742 kb on + strand, within Pf6N2E2_2791 at 3281.065 kb on + strand, within Pf6N2E2_2792 at 3281.107 kb on + strand, within Pf6N2E2_2792 at 3281.107 kb on + strand, within Pf6N2E2_2792 at 3281.107 kb on + strand, within Pf6N2E2_2792 at 3281.131 kb on + strand, within Pf6N2E2_2792 at 3281.131 kb on + strand, within Pf6N2E2_2792 at 3281.131 kb on + strand, within Pf6N2E2_2792 at 3281.486 kb on + strand at 3281.486 kb on + strand at 3281.591 kb on + strand at 3281.591 kb on + strand at 3281.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M remove 3,279,602 + Pf6N2E2_2789 0.79 +0.2 3,279,603 - Pf6N2E2_2789 0.79 +0.2 3,279,613 - Pf6N2E2_2789 0.81 -0.1 3,279,613 - Pf6N2E2_2789 0.81 +0.6 3,279,732 - -0.8 3,279,732 - +0.4 3,279,799 + +0.5 3,279,799 + +0.6 3,279,799 + -0.8 3,279,799 + +0.8 3,279,799 + -2.8 3,279,799 + +1.1 3,279,800 - +0.4 3,279,800 - -0.0 3,279,803 + -0.3 3,279,840 + -0.1 3,279,881 + -0.6 3,279,930 - +2.1 3,279,955 - -0.3 3,279,955 - +0.1 3,280,105 + Pf6N2E2_2790 0.41 +0.8 3,280,257 + Pf6N2E2_2790 0.83 -0.0 3,280,258 - Pf6N2E2_2790 0.83 -0.4 3,280,288 + +0.2 3,280,288 + -0.4 3,280,356 + +0.4 3,280,356 + -0.8 3,280,357 - +0.5 3,280,357 - -0.6 3,280,397 + +1.0 3,280,429 - +0.6 3,280,472 + +0.5 3,280,472 + -0.7 3,280,526 - -0.1 3,280,526 - -0.8 3,280,552 + +0.2 3,280,554 + -0.4 3,280,607 - +0.2 3,280,607 - -1.4 3,280,607 - +0.5 3,280,632 + Pf6N2E2_2791 0.18 -1.4 3,280,633 - Pf6N2E2_2791 0.18 -1.2 3,280,633 - Pf6N2E2_2791 0.18 -0.5 3,280,742 + Pf6N2E2_2791 0.62 -1.7 3,281,065 + Pf6N2E2_2792 0.64 +0.1 3,281,107 + Pf6N2E2_2792 0.74 +0.7 3,281,107 + Pf6N2E2_2792 0.74 -1.8 3,281,107 + Pf6N2E2_2792 0.74 +0.8 3,281,131 + Pf6N2E2_2792 0.80 +0.3 3,281,131 + Pf6N2E2_2792 0.80 -0.4 3,281,131 + Pf6N2E2_2792 0.80 +2.1 3,281,486 + +0.5 3,281,486 + -0.0 3,281,591 + +0.5 3,281,591 + +0.7 3,281,591 + +0.5
Or see this region's nucleotide sequence