Experiment: Vanillyl Alcohol 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_138 and Pf6N2E2_139 are separated by 435 nucleotides Pf6N2E2_139 and Pf6N2E2_140 are separated by 85 nucleotides
Pf6N2E2_138 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 187,665 to 188,594
_138
Pf6N2E2_139 - Two-component response regulator, at 189,030 to 189,977
_139
Pf6N2E2_140 - Glutamate carboxypeptidase (EC 3.4.17.11), at 190,063 to 191,301
_140
Position (kb) 189
190 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 188.171 kb on - strand, within Pf6N2E2_138 at 188.263 kb on + strand, within Pf6N2E2_138 at 188.326 kb on + strand, within Pf6N2E2_138 at 188.381 kb on - strand, within Pf6N2E2_138 at 188.515 kb on + strand at 188.540 kb on - strand at 188.540 kb on - strand at 188.655 kb on + strand at 188.656 kb on - strand at 188.656 kb on - strand at 188.656 kb on - strand at 188.656 kb on - strand at 188.662 kb on + strand at 188.662 kb on + strand at 188.699 kb on - strand at 188.699 kb on - strand at 188.715 kb on + strand at 188.715 kb on + strand at 188.715 kb on + strand at 188.715 kb on + strand at 188.716 kb on - strand at 188.716 kb on - strand at 188.716 kb on - strand at 188.723 kb on - strand at 188.723 kb on - strand at 188.723 kb on - strand at 188.747 kb on + strand at 188.747 kb on + strand at 188.747 kb on + strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.748 kb on - strand at 188.789 kb on + strand at 188.789 kb on + strand at 188.789 kb on + strand at 188.790 kb on - strand at 188.833 kb on + strand at 188.833 kb on + strand at 188.937 kb on + strand at 188.937 kb on + strand at 188.937 kb on + strand at 188.937 kb on + strand at 188.937 kb on + strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.938 kb on - strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.939 kb on + strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.940 kb on - strand at 188.941 kb on + strand at 188.942 kb on - strand at 189.066 kb on + strand at 189.118 kb on + strand at 189.119 kb on - strand at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.336 kb on + strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.337 kb on - strand, within Pf6N2E2_139 at 189.402 kb on + strand, within Pf6N2E2_139 at 189.402 kb on + strand, within Pf6N2E2_139 at 189.402 kb on + strand, within Pf6N2E2_139 at 189.403 kb on - strand, within Pf6N2E2_139 at 189.403 kb on - strand, within Pf6N2E2_139 at 189.403 kb on - strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.600 kb on + strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.601 kb on - strand, within Pf6N2E2_139 at 189.786 kb on + strand, within Pf6N2E2_139 at 189.786 kb on + strand, within Pf6N2E2_139 at 189.787 kb on - strand, within Pf6N2E2_139 at 189.821 kb on + strand, within Pf6N2E2_139 at 189.821 kb on + strand, within Pf6N2E2_139 at 189.822 kb on - strand, within Pf6N2E2_139 at 189.850 kb on - strand, within Pf6N2E2_139 at 189.894 kb on + strand at 189.894 kb on + strand at 189.995 kb on + strand at 189.996 kb on - strand at 190.187 kb on - strand, within Pf6N2E2_140 at 190.187 kb on - strand, within Pf6N2E2_140 at 190.246 kb on + strand, within Pf6N2E2_140 at 190.246 kb on + strand, within Pf6N2E2_140 at 190.246 kb on + strand, within Pf6N2E2_140 at 190.247 kb on - strand, within Pf6N2E2_140 at 190.247 kb on - strand, within Pf6N2E2_140 at 190.247 kb on - strand, within Pf6N2E2_140 at 190.247 kb on - strand, within Pf6N2E2_140 at 190.275 kb on + strand, within Pf6N2E2_140 at 190.327 kb on - strand, within Pf6N2E2_140 at 190.516 kb on + strand, within Pf6N2E2_140 at 190.517 kb on - strand, within Pf6N2E2_140 at 190.517 kb on - strand, within Pf6N2E2_140 at 190.556 kb on - strand, within Pf6N2E2_140 at 190.566 kb on + strand, within Pf6N2E2_140 at 190.566 kb on + strand, within Pf6N2E2_140 at 190.567 kb on - strand, within Pf6N2E2_140
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M remove 188,171 - Pf6N2E2_138 0.54 +1.5 188,263 + Pf6N2E2_138 0.64 +0.2 188,326 + Pf6N2E2_138 0.71 +0.8 188,381 - Pf6N2E2_138 0.77 +0.2 188,515 + -0.7 188,540 - +1.2 188,540 - +0.2 188,655 + -0.9 188,656 - -0.2 188,656 - +0.6 188,656 - -0.2 188,656 - -0.8 188,662 + -0.0 188,662 + +0.8 188,699 - -0.3 188,699 - -0.2 188,715 + -1.0 188,715 + +1.2 188,715 + -2.4 188,715 + -1.4 188,716 - -1.2 188,716 - -1.5 188,716 - -0.7 188,723 - +0.2 188,723 - -0.2 188,723 - +0.4 188,747 + -1.4 188,747 + -1.6 188,747 + +0.1 188,748 - -1.1 188,748 - -0.1 188,748 - +0.5 188,748 - -0.2 188,748 - -2.6 188,748 - -0.4 188,748 - -0.6 188,748 - +0.1 188,789 + +0.9 188,789 + -0.7 188,789 + +1.8 188,790 - +3.0 188,833 + +0.2 188,833 + +1.4 188,937 + -0.2 188,937 + -1.0 188,937 + -2.1 188,937 + +0.2 188,937 + -0.3 188,938 - -0.9 188,938 - +0.7 188,938 - +0.4 188,938 - +0.8 188,938 - +0.7 188,938 - -1.1 188,939 + +0.4 188,939 + +1.2 188,939 + +0.8 188,939 + +0.1 188,939 + -0.5 188,939 + -0.2 188,939 + -0.3 188,939 + -2.4 188,939 + -1.2 188,940 - -1.1 188,940 - +0.0 188,940 - +1.2 188,940 - +0.1 188,940 - +0.2 188,940 - -0.3 188,940 - +2.1 188,941 + +0.9 188,942 - -0.5 189,066 + +0.4 189,118 + -0.9 189,119 - +0.9 189,336 + Pf6N2E2_139 0.32 -0.4 189,336 + Pf6N2E2_139 0.32 -0.3 189,336 + Pf6N2E2_139 0.32 -1.7 189,336 + Pf6N2E2_139 0.32 -0.2 189,336 + Pf6N2E2_139 0.32 +0.4 189,336 + Pf6N2E2_139 0.32 -2.3 189,336 + Pf6N2E2_139 0.32 -0.6 189,336 + Pf6N2E2_139 0.32 -2.2 189,337 - Pf6N2E2_139 0.32 +0.1 189,337 - Pf6N2E2_139 0.32 +0.7 189,337 - Pf6N2E2_139 0.32 +0.2 189,337 - Pf6N2E2_139 0.32 +1.3 189,337 - Pf6N2E2_139 0.32 -0.5 189,337 - Pf6N2E2_139 0.32 +3.0 189,337 - Pf6N2E2_139 0.32 -0.8 189,337 - Pf6N2E2_139 0.32 +0.0 189,337 - Pf6N2E2_139 0.32 +0.1 189,337 - Pf6N2E2_139 0.32 -0.4 189,337 - Pf6N2E2_139 0.32 +0.3 189,337 - Pf6N2E2_139 0.32 -0.7 189,402 + Pf6N2E2_139 0.39 -0.4 189,402 + Pf6N2E2_139 0.39 +0.5 189,402 + Pf6N2E2_139 0.39 +0.7 189,403 - Pf6N2E2_139 0.39 +1.2 189,403 - Pf6N2E2_139 0.39 -1.4 189,403 - Pf6N2E2_139 0.39 -0.5 189,600 + Pf6N2E2_139 0.60 -1.1 189,600 + Pf6N2E2_139 0.60 -1.1 189,600 + Pf6N2E2_139 0.60 +0.7 189,600 + Pf6N2E2_139 0.60 +0.0 189,600 + Pf6N2E2_139 0.60 +1.3 189,600 + Pf6N2E2_139 0.60 -1.9 189,601 - Pf6N2E2_139 0.60 -1.0 189,601 - Pf6N2E2_139 0.60 +1.2 189,601 - Pf6N2E2_139 0.60 -1.0 189,601 - Pf6N2E2_139 0.60 -0.1 189,601 - Pf6N2E2_139 0.60 -0.1 189,601 - Pf6N2E2_139 0.60 -0.8 189,601 - Pf6N2E2_139 0.60 -1.2 189,601 - Pf6N2E2_139 0.60 -1.2 189,601 - Pf6N2E2_139 0.60 +0.9 189,601 - Pf6N2E2_139 0.60 +0.3 189,601 - Pf6N2E2_139 0.60 -1.2 189,601 - Pf6N2E2_139 0.60 +0.3 189,601 - Pf6N2E2_139 0.60 -0.5 189,601 - Pf6N2E2_139 0.60 +0.2 189,601 - Pf6N2E2_139 0.60 -1.5 189,601 - Pf6N2E2_139 0.60 +0.1 189,601 - Pf6N2E2_139 0.60 -1.1 189,601 - Pf6N2E2_139 0.60 -0.5 189,601 - Pf6N2E2_139 0.60 -1.0 189,786 + Pf6N2E2_139 0.80 -2.6 189,786 + Pf6N2E2_139 0.80 +0.8 189,787 - Pf6N2E2_139 0.80 -0.6 189,821 + Pf6N2E2_139 0.83 -0.4 189,821 + Pf6N2E2_139 0.83 -0.2 189,822 - Pf6N2E2_139 0.84 -0.8 189,850 - Pf6N2E2_139 0.86 +0.6 189,894 + -0.3 189,894 + +2.1 189,995 + +0.5 189,996 - +0.5 190,187 - Pf6N2E2_140 0.10 +0.6 190,187 - Pf6N2E2_140 0.10 +0.8 190,246 + Pf6N2E2_140 0.15 +1.1 190,246 + Pf6N2E2_140 0.15 +0.1 190,246 + Pf6N2E2_140 0.15 +0.2 190,247 - Pf6N2E2_140 0.15 +0.2 190,247 - Pf6N2E2_140 0.15 +0.8 190,247 - Pf6N2E2_140 0.15 -1.5 190,247 - Pf6N2E2_140 0.15 -0.0 190,275 + Pf6N2E2_140 0.17 -1.1 190,327 - Pf6N2E2_140 0.21 -0.8 190,516 + Pf6N2E2_140 0.37 +0.5 190,517 - Pf6N2E2_140 0.37 +0.8 190,517 - Pf6N2E2_140 0.37 -0.5 190,556 - Pf6N2E2_140 0.40 -0.8 190,566 + Pf6N2E2_140 0.41 -0.2 190,566 + Pf6N2E2_140 0.41 -1.9 190,567 - Pf6N2E2_140 0.41 -0.9
Or see this region's nucleotide sequence