Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3975

Experiment: LB, pH8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB, pH8
4,088,496	+		Ga0059261_3973	0.86	-0.3
4,088,497	-		Ga0059261_3973	0.86	-1.9
4,088,497	-		Ga0059261_3973	0.86	-0.8
4,088,497	-		Ga0059261_3973	0.86	+1.4
4,088,634	+				+0.1
4,088,634	+				+0.0
4,088,634	+				+1.7
4,088,634	+				-1.5
4,088,634	+				-0.4
4,088,634	+				-0.2
4,088,634	+				-0.9
4,088,634	+				-0.4
4,088,635	-				-0.4
4,088,635	-				-0.4
4,088,635	-				-0.9
4,088,635	-				+1.4
4,088,635	-				-0.7
4,088,637	+				-0.4
4,088,637	+				-0.1
4,088,637	+				+0.5
4,088,637	+				+1.0
4,088,638	-				-1.3
4,088,638	-				-1.0
4,088,638	-				-0.4
4,088,638	-				+0.0
4,088,669	-				-0.3
4,088,709	-				-1.5
4,088,709	-				+1.0
4,088,709	-				-1.5
4,088,756	+				+0.5
4,088,756	+				+0.1
4,088,756	+				-0.1
4,088,757	-				+0.3
4,088,757	-				+0.4
4,088,757	-				-0.3
4,088,809	+				+0.4
4,088,818	+				+0.4
4,088,925	+		Ga0059261_3974	0.12	+0.6
4,088,949	+		Ga0059261_3974	0.16	+0.4
4,088,949	+		Ga0059261_3974	0.16	-0.4
4,088,950	-		Ga0059261_3974	0.16	+0.3
4,088,950	-		Ga0059261_3974	0.16	+0.4
4,088,959	+		Ga0059261_3974	0.18	+0.5
4,088,959	+		Ga0059261_3974	0.18	+1.3
4,088,959	+		Ga0059261_3974	0.18	+0.8
4,088,959	+		Ga0059261_3974	0.18	+0.9
4,088,960	-		Ga0059261_3974	0.18	-0.9
4,088,960	-		Ga0059261_3974	0.18	+0.1
4,088,989	+		Ga0059261_3974	0.23	-1.2
4,088,989	+		Ga0059261_3974	0.23	-0.5
4,088,996	+				+0.1
4,088,996	+		Ga0059261_3974	0.24	-0.6
4,088,996	+		Ga0059261_3974	0.24	-0.6
4,088,996	+		Ga0059261_3974	0.24	-0.9
4,088,997	-		Ga0059261_3974	0.24	-0.2
4,088,997	-		Ga0059261_3974	0.24	-0.9
4,088,997	-		Ga0059261_3974	0.24	-1.5
4,088,997	-		Ga0059261_3974	0.24	+0.6
4,088,997	-		Ga0059261_3974	0.24	-0.5
4,089,019	+		Ga0059261_3974	0.28	+0.9
4,089,020	-		Ga0059261_3974	0.28	-0.5
4,089,020	-		Ga0059261_3974	0.28	+0.6
4,089,020	-		Ga0059261_3974	0.28	-0.3
4,089,020	-		Ga0059261_3974	0.28	+0.1
4,089,046	+		Ga0059261_3974	0.32	+0.2
4,089,046	+		Ga0059261_3974	0.32	-0.6
4,089,046	+		Ga0059261_3974	0.32	+1.1
4,089,046	+		Ga0059261_3974	0.32	-0.6
4,089,046	+		Ga0059261_3974	0.32	+0.1
4,089,047	-		Ga0059261_3974	0.33	+0.1
4,089,047	-		Ga0059261_3974	0.33	-0.5
4,089,047	-		Ga0059261_3974	0.33	+0.1
4,089,064	+		Ga0059261_3974	0.35	+0.3
4,089,064	+		Ga0059261_3974	0.35	+0.9
4,089,064	+		Ga0059261_3974	0.35	+0.4
4,089,065	-		Ga0059261_3974	0.35	+0.1
4,089,065	-		Ga0059261_3974	0.35	-0.2
4,089,065	-		Ga0059261_3974	0.35	+0.7
4,089,283	+		Ga0059261_3974	0.72	+0.5
4,089,374	-		Ga0059261_3974	0.87	+0.1
4,089,374	-		Ga0059261_3974	0.87	+0.1
4,089,374	-		Ga0059261_3974	0.87	-1.5
4,089,430	-				-0.1
4,089,438	+				+0.2
4,089,438	+				+0.5
4,089,461	+				-0.9
4,089,461	+				+0.3
4,089,461	+				+0.5
4,089,461	+				-0.7
4,089,461	+				-0.5
4,089,462	-				+0.2
4,089,462	-				+0.3
4,089,462	-				+0.1
4,089,552	+		Ga0059261_3975	0.20	-0.1
4,089,552	+		Ga0059261_3975	0.20	+1.3
4,089,564	+		Ga0059261_3975	0.22	-1.4
4,089,714	-		Ga0059261_3975	0.51	-0.3
4,089,714	-		Ga0059261_3975	0.51	-1.3
4,089,758	+		Ga0059261_3975	0.60	-0.7
4,089,771	+		Ga0059261_3975	0.62	-0.6
4,089,771	+				+0.1
4,089,771	+		Ga0059261_3975	0.62	+0.3
4,089,772	-		Ga0059261_3975	0.62	+0.5
4,089,772	-		Ga0059261_3975	0.62	+1.1
4,089,772	-		Ga0059261_3975	0.62	-0.1
4,089,772	-		Ga0059261_3975	0.62	+0.5
4,089,968	+				+0.4
4,089,968	+				+0.2
4,089,969	-				-1.5
4,089,969	-				+0.7
4,090,085	+		Ga0059261_3976	0.12	+0.5
4,090,085	+		Ga0059261_3976	0.12	-0.2
4,090,086	-				-1.5
4,090,170	+		Ga0059261_3976	0.21	+0.9
4,090,170	+		Ga0059261_3976	0.21	-1.9
4,090,170	+		Ga0059261_3976	0.21	+0.1
4,090,170	+		Ga0059261_3976	0.21	+0.3
4,090,171	-		Ga0059261_3976	0.21	-0.1
4,090,299	-		Ga0059261_3976	0.35	+0.1
4,090,299	-		Ga0059261_3976	0.35	+1.3
4,090,299	-		Ga0059261_3976	0.35	-0.1
4,090,416	+		Ga0059261_3976	0.47	+0.4
4,090,416	+		Ga0059261_3976	0.47	-1.2
4,090,416	+		Ga0059261_3976	0.47	+0.8
4,090,417	-		Ga0059261_3976	0.47	-0.5
4,090,500	+		Ga0059261_3976	0.56	+1.0
4,090,500	+		Ga0059261_3976	0.56	-1.2
4,090,501	-		Ga0059261_3976	0.56	-0.0
4,090,501	-		Ga0059261_3976	0.56	-0.5
4,090,501	-		Ga0059261_3976	0.56	-0.1
4,090,501	-		Ga0059261_3976	0.56	-0.4
4,090,501	-		Ga0059261_3976	0.56	+0.1
4,090,709	+		Ga0059261_3976	0.78	+0.4
4,090,709	+		Ga0059261_3976	0.78	-0.9
4,090,709	+		Ga0059261_3976	0.78	+0.9
4,090,709	+		Ga0059261_3976	0.78	+0.2
4,090,709	+		Ga0059261_3976	0.78	+0.6
4,090,709	+		Ga0059261_3976	0.78	+0.4
4,090,709	+		Ga0059261_3976	0.78	-0.6
4,090,709	+		Ga0059261_3976	0.78	-0.2
4,090,710	-		Ga0059261_3976	0.78	-0.7
4,090,710	-		Ga0059261_3976	0.78	-0.8
4,090,710	-		Ga0059261_3976	0.78	-0.1
4,090,811	+		Ga0059261_3976	0.88	+0.4
4,090,811	+		Ga0059261_3976	0.88	+0.3
4,090,811	+		Ga0059261_3976	0.88	+0.2
4,090,811	+		Ga0059261_3976	0.88	+0.0
4,090,811	+		Ga0059261_3976	0.88	+0.1
4,090,812	-		Ga0059261_3976	0.89	+0.0
4,090,812	-		Ga0059261_3976	0.89	-0.2
4,090,812	-		Ga0059261_3976	0.89	-0.9
4,090,812	-		Ga0059261_3976	0.89	+0.9
4,090,812	-		Ga0059261_3976	0.89	-0.2