Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19405

Experiment: LB_Anaerobic_18HR_ZN20B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_18HR_ZN20B
1,010,399	+		CSW01_19400	0.32	-1.8
1,010,399	+		CSW01_19400	0.32	-0.2
1,010,399	+		CSW01_19400	0.32	+0.2
1,010,455	-		CSW01_19400	0.36	+0.1
1,010,475	-		CSW01_19400	0.37	-0.3
1,010,475	-		CSW01_19400	0.37	-0.8
1,010,528	+		CSW01_19400	0.41	-0.2
1,010,528	+		CSW01_19400	0.41	+0.3
1,010,604	+		CSW01_19400	0.47	+0.2
1,010,612	+		CSW01_19400	0.48	+0.1
1,010,733	-		CSW01_19400	0.57	+0.6
1,010,844	-		CSW01_19400	0.65	+0.6
1,010,852	+		CSW01_19400	0.66	+0.2
1,011,038	-		CSW01_19400	0.80	-0.9
1,011,038	-		CSW01_19400	0.80	-0.7
1,011,041	+		CSW01_19400	0.80	+0.2
1,011,151	+		CSW01_19400	0.89	-0.2
1,011,159	-		CSW01_19400	0.89	-1.2
1,011,209	+				+0.7
1,011,258	-				-0.6
1,011,258	-				+0.6
1,011,262	+				-0.4
1,011,270	-				-0.1
1,011,339	+				+0.2
1,011,341	+				+1.4
1,011,356	-				+0.1
1,011,379	+				+0.6
1,011,386	+				-0.3
1,011,386	+				+0.5
1,011,483	-				+0.3
1,011,494	+				-1.4
1,011,499	+				+0.1
1,011,507	-				-0.3
1,011,507	-				+0.0
1,011,507	-				-0.8
1,011,507	-				+0.1
1,011,507	-				-0.1
1,011,507	-				-0.3
1,011,509	+				-1.0
1,011,544	-				-0.1
1,011,549	+				+0.2
1,011,549	+				+0.3
1,011,549	+				+0.3
1,011,549	+				+0.1
1,011,549	+				+0.1
1,011,549	+				-0.1
1,011,549	+				+0.1
1,011,549	+				-0.5
1,011,549	+				+0.8
1,011,549	+				-0.1
1,011,549	+				-0.2
1,011,549	+				+0.8
1,011,557	-				-0.7
1,011,557	-				-0.7
1,011,557	-				-0.3
1,011,557	-				-0.7
1,011,557	-				-0.2
1,011,557	-				+1.0
1,011,557	-				-0.5
1,011,557	-				+0.6
1,011,557	-				-1.3
1,011,557	-				+0.1
1,011,557	-				-0.0
1,011,557	-				-0.3
1,011,557	-				+0.2
1,011,581	+				-0.2
1,011,637	-		CSW01_19405	0.12	-0.0
1,011,703	+		CSW01_19405	0.15	+1.1
1,011,721	+		CSW01_19405	0.16	-0.2
1,011,758	+		CSW01_19405	0.18	-0.5
1,011,758	+		CSW01_19405	0.18	+0.5
1,011,773	-		CSW01_19405	0.19	-0.2
1,011,800	+		CSW01_19405	0.20	+0.9
1,011,825	-		CSW01_19405	0.21	+1.0
1,011,825	-		CSW01_19405	0.21	+0.4
1,011,869	+		CSW01_19405	0.23	+0.1
1,011,934	+		CSW01_19405	0.26	-1.0
1,011,945	+		CSW01_19405	0.27	+1.8
1,011,971	-		CSW01_19405	0.28	+1.2
1,012,054	+		CSW01_19405	0.32	+0.4
1,012,059	+		CSW01_19405	0.32	-0.8
1,012,067	-		CSW01_19405	0.32	+0.6
1,012,083	+		CSW01_19405	0.33	+0.5
1,012,171	-		CSW01_19405	0.37	+1.4
1,012,201	+		CSW01_19405	0.39	+0.3
1,012,346	+		CSW01_19405	0.45	-0.0
1,012,368	-		CSW01_19405	0.46	-0.0
1,012,368	-		CSW01_19405	0.46	+0.2
1,012,368	-		CSW01_19405	0.46	+0.3
1,012,400	+		CSW01_19405	0.48	-0.1
1,012,548	+		CSW01_19405	0.55	+0.2
1,012,558	+		CSW01_19405	0.55	+0.4
1,012,558	+		CSW01_19405	0.55	-0.5
1,012,558	+		CSW01_19405	0.55	+1.6
1,012,558	+		CSW01_19405	0.55	-0.6
1,012,558	+		CSW01_19405	0.55	+1.5
1,012,558	+		CSW01_19405	0.55	+1.8
1,012,716	+		CSW01_19405	0.62	+0.9
1,012,724	-		CSW01_19405	0.63	-0.4
1,012,746	-		CSW01_19405	0.64	-0.1
1,012,746	-		CSW01_19405	0.64	+0.2
1,012,747	+		CSW01_19405	0.64	-0.1
1,012,747	+		CSW01_19405	0.64	+2.5
1,012,755	-		CSW01_19405	0.64	+0.4
1,012,832	+		CSW01_19405	0.68	-1.0
1,012,854	+		CSW01_19405	0.69	-0.1
1,012,905	+		CSW01_19405	0.71	-0.1
1,012,913	-		CSW01_19405	0.71	+0.0
1,012,913	-		CSW01_19405	0.71	+1.0
1,012,913	-		CSW01_19405	0.71	+0.4
1,012,916	-		CSW01_19405	0.72	+0.3
1,012,967	+		CSW01_19405	0.74	+0.5
1,012,975	+		CSW01_19405	0.74	+1.2
1,012,983	+		CSW01_19405	0.75	+0.4
1,012,983	+		CSW01_19405	0.75	-0.0
1,012,983	+		CSW01_19405	0.75	+0.5
1,012,983	+		CSW01_19405	0.75	+0.8
1,012,983	+		CSW01_19405	0.75	-0.2
1,012,991	-		CSW01_19405	0.75	+0.5
1,012,991	-		CSW01_19405	0.75	+0.1
1,012,991	-		CSW01_19405	0.75	-0.1
1,012,991	-		CSW01_19405	0.75	+0.0
1,012,991	-		CSW01_19405	0.75	+0.2
1,012,991	-		CSW01_19405	0.75	-0.2
1,012,991	-		CSW01_19405	0.75	+0.2
1,012,991	-		CSW01_19405	0.75	-0.1
1,012,991	-		CSW01_19405	0.75	-0.2
1,012,991	-		CSW01_19405	0.75	-0.8
1,012,991	-		CSW01_19405	0.75	+2.1
1,012,991	-		CSW01_19405	0.75	-0.5
1,013,010	+		CSW01_19405	0.76	+0.5
1,013,056	+		CSW01_19405	0.78	+0.2
1,013,066	+		CSW01_19405	0.79	+0.4
1,013,066	+		CSW01_19405	0.79	-0.0
1,013,118	+		CSW01_19405	0.81	+1.1
1,013,246	-		CSW01_19405	0.87	+0.2
1,013,279	-		CSW01_19405	0.88	+1.0
1,013,281	+		CSW01_19405	0.88	+0.0
1,013,281	+		CSW01_19405	0.88	+1.3
1,013,331	+				-0.5
1,013,331	+				+1.3
1,013,331	+				+0.8
1,013,341	+				+0.7
1,013,359	+				+0.4
1,013,367	-				+0.8
1,013,430	-				-0.1
1,013,433	+				+0.6
1,013,439	-				+0.1
1,013,474	-				+0.3
1,013,475	-				-0.1
1,013,476	+				-0.3
1,013,484	-				+1.4
1,013,486	-				-0.5
1,013,487	-				+0.4
1,013,497	-				-3.1
1,013,497	-				+0.2
1,013,660	+				+0.9
1,013,667	-				+0.3
1,013,667	-				+0.8
1,013,667	-				+0.7
1,013,667	-				-0.4
1,013,719	-				+0.5
1,013,726	-				-0.3
1,013,728	+				-0.1
1,013,728	+				-0.1
1,013,728	+				-0.2
1,013,728	+				-0.6
1,013,736	-				+0.3
1,013,736	-				-0.7
1,013,816	+				-0.2
1,013,826	+				+0.8
1,013,826	+				-0.4
1,013,827	+				-0.4
1,013,834	-				+0.4
1,013,835	-				-0.1
1,013,835	-				+0.0
1,013,838	+				+0.4
1,013,846	+				-0.2
1,013,856	+				+0.4
1,013,856	+				-0.7
1,013,856	+				-0.0
1,013,856	+				-0.4
1,013,856	-				+0.1
1,013,864	-				+0.6
1,013,864	-				+1.0
1,013,864	-				-0.4
1,013,864	-				-0.2
1,013,864	-				-1.0
1,013,864	-				+0.8
1,013,864	-				-1.3
1,013,914	+		CSW01_19410	0.36	-0.6
1,013,927	-		CSW01_19410	0.46	-0.5
1,013,927	-		CSW01_19410	0.46	+0.8
1,013,937	-		CSW01_19410	0.54	-1.3
1,013,941	+		CSW01_19410	0.58	-0.3
1,013,941	+		CSW01_19410	0.58	+0.5
1,013,947	-		CSW01_19410	0.63	+1.1
1,013,949	-		CSW01_19410	0.64	+0.1
1,013,949	-		CSW01_19410	0.64	+0.1
1,014,041	-				+0.5
1,014,053	-				+0.0
1,014,214	+				-1.2
1,014,224	+				+0.1
1,014,226	+				+0.3
1,014,234	+				+1.4
1,014,234	+				-1.2
1,014,234	+				+0.1
1,014,234	+				-1.3
1,014,234	+				+0.4
1,014,242	-				-0.3
1,014,295	+				-1.8
1,014,393	-		CSW01_19415	0.45	-0.9
1,014,407	-		CSW01_19415	0.51	+0.5
1,014,428	-		CSW01_19415	0.60	-1.7
1,014,449	-		CSW01_19415	0.69	+2.0
1,014,457	+		CSW01_19415	0.72	+0.8
1,014,463	+		CSW01_19415	0.75	-0.1
1,014,511	+				+0.2