Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19015

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19005 and CSW01_19010 are separated by 19 nucleotidesCSW01_19010 and CSW01_19015 are separated by 19 nucleotidesCSW01_19015 and CSW01_19020 are separated by 130 nucleotides CSW01_19005: CSW01_19005 - amino acid ABC transporter substrate-binding protein, at 924,858 to 925,589 _19005 CSW01_19010: CSW01_19010 - methyl-accepting chemotaxis protein, at 925,609 to 926,493 _19010 CSW01_19015: CSW01_19015 - chemotaxis protein, at 926,513 to 927,157 _19015 CSW01_19020: CSW01_19020 - ABC transporter, at 927,288 to 928,031 _19020 Position (kb) 926 927 928Strain fitness (log2 ratio) -2 -1 0 1at 925.532 kb on - strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.561 kb on - strandat 925.563 kb on + strandat 925.563 kb on + strandat 925.571 kb on - strandat 925.571 kb on - strandat 925.613 kb on + strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.630 kb on + strandat 925.630 kb on + strandat 925.696 kb on + strandat 925.696 kb on + strandat 925.704 kb on - strand, within CSW01_19010at 925.762 kb on + strand, within CSW01_19010at 925.891 kb on - strand, within CSW01_19010at 926.075 kb on + strand, within CSW01_19010at 926.213 kb on - strand, within CSW01_19010at 926.244 kb on - strand, within CSW01_19010at 926.308 kb on + strand, within CSW01_19010at 926.313 kb on + strand, within CSW01_19010at 926.316 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.395 kb on + strand, within CSW01_19010at 926.426 kb on - strandat 926.437 kb on - strandat 926.437 kb on - strandat 926.460 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.473 kb on - strandat 926.473 kb on - strandat 926.475 kb on + strandat 926.483 kb on - strandat 926.488 kb on + strandat 926.541 kb on - strandat 926.562 kb on - strandat 926.592 kb on + strand, within CSW01_19015at 926.634 kb on - strand, within CSW01_19015at 926.659 kb on - strand, within CSW01_19015at 926.768 kb on + strand, within CSW01_19015at 926.768 kb on + strand, within CSW01_19015at 926.864 kb on - strand, within CSW01_19015at 926.935 kb on + strand, within CSW01_19015at 926.977 kb on - strand, within CSW01_19015at 927.018 kb on - strand, within CSW01_19015at 927.026 kb on - strand, within CSW01_19015at 927.026 kb on - strand, within CSW01_19015at 927.036 kb on - strand, within CSW01_19015at 927.147 kb on - strandat 927.147 kb on - strandat 927.173 kb on - strandat 927.219 kb on - strandat 927.223 kb on + strandat 927.412 kb on + strand, within CSW01_19020at 927.530 kb on - strand, within CSW01_19020at 927.621 kb on - strand, within CSW01_19020at 927.635 kb on + strand, within CSW01_19020at 927.635 kb on + strand, within CSW01_19020at 927.643 kb on - strand, within CSW01_19020at 927.789 kb on + strand, within CSW01_19020at 927.814 kb on + strand, within CSW01_19020at 927.814 kb on + strand, within CSW01_19020at 927.822 kb on - strand, within CSW01_19020at 927.834 kb on - strand, within CSW01_19020at 927.846 kb on + strand, within CSW01_19020at 927.871 kb on + strand, within CSW01_19020at 927.909 kb on + strand, within CSW01_19020at 927.909 kb on + strand, within CSW01_19020at 927.914 kb on + strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.917 kb on - strand, within CSW01_19020at 927.922 kb on - strand, within CSW01_19020at 927.922 kb on - strand, within CSW01_19020at 927.955 kb on + strand, within CSW01_19020at 927.955 kb on - strand, within CSW01_19020at 927.963 kb on - strandat 927.963 kb on - strandat 927.963 kb on - strandat 928.017 kb on - strandat 928.077 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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925,532 - +0.2
925,553 + -1.4
925,553 + +0.2
925,553 + -0.1
925,553 + +0.5
925,553 + -0.0
925,553 + +0.9
925,553 + +0.4
925,561 - +0.4
925,563 + +0.0
925,563 + -2.1
925,571 - +0.6
925,571 - +0.3
925,613 + +0.4
925,621 - +1.0
925,621 - +0.7
925,621 - -0.4
925,621 - +0.4
925,630 + -1.0
925,630 + -0.4
925,696 + -0.6
925,696 + -1.1
925,704 - CSW01_19010 0.11 -0.5
925,762 + CSW01_19010 0.17 -0.4
925,891 - CSW01_19010 0.32 +0.5
926,075 + CSW01_19010 0.53 +0.1
926,213 - CSW01_19010 0.68 -0.0
926,244 - CSW01_19010 0.72 +0.0
926,308 + CSW01_19010 0.79 +0.2
926,313 + CSW01_19010 0.80 +1.3
926,316 - CSW01_19010 0.80 +0.4
926,321 - CSW01_19010 0.80 -0.2
926,321 - CSW01_19010 0.80 +0.8
926,395 + CSW01_19010 0.89 +0.0
926,426 - +0.2
926,437 - +1.3
926,437 - -0.3
926,460 + +1.1
926,465 + -0.2
926,465 + +1.5
926,465 + -0.1
926,465 + +0.2
926,473 - -0.0
926,473 - +0.3
926,475 + -0.5
926,483 - +0.5
926,488 + +1.0
926,541 - +0.1
926,562 - +0.0
926,592 + CSW01_19015 0.12 +0.0
926,634 - CSW01_19015 0.19 -0.6
926,659 - CSW01_19015 0.23 +0.6
926,768 + CSW01_19015 0.40 +0.4
926,768 + CSW01_19015 0.40 +0.7
926,864 - CSW01_19015 0.54 +0.5
926,935 + CSW01_19015 0.65 -0.0
926,977 - CSW01_19015 0.72 +1.1
927,018 - CSW01_19015 0.78 +0.2
927,026 - CSW01_19015 0.80 -1.9
927,026 - CSW01_19015 0.80 +0.2
927,036 - CSW01_19015 0.81 +0.0
927,147 - -0.3
927,147 - +0.2
927,173 - +0.2
927,219 - -0.0
927,223 + -0.1
927,412 + CSW01_19020 0.17 -0.2
927,530 - CSW01_19020 0.33 +0.8
927,621 - CSW01_19020 0.45 -0.5
927,635 + CSW01_19020 0.47 +0.2
927,635 + CSW01_19020 0.47 -1.1
927,643 - CSW01_19020 0.48 +1.2
927,789 + CSW01_19020 0.67 +0.6
927,814 + CSW01_19020 0.71 -1.2
927,814 + CSW01_19020 0.71 +0.2
927,822 - CSW01_19020 0.72 +0.2
927,834 - CSW01_19020 0.73 -0.6
927,846 + CSW01_19020 0.75 -0.6
927,871 + CSW01_19020 0.78 -0.8
927,909 + CSW01_19020 0.83 +0.2
927,909 + CSW01_19020 0.83 +1.4
927,914 + CSW01_19020 0.84 +0.2
927,917 - CSW01_19020 0.85 +0.7
927,917 - CSW01_19020 0.85 +0.1
927,917 - CSW01_19020 0.85 +0.6
927,917 - CSW01_19020 0.85 -0.0
927,917 - CSW01_19020 0.85 -0.3
927,917 - CSW01_19020 0.85 -0.0
927,922 - CSW01_19020 0.85 +0.3
927,922 - CSW01_19020 0.85 +0.4
927,955 + CSW01_19020 0.90 -0.3
927,955 - CSW01_19020 0.90 -2.3
927,963 - +0.9
927,963 - -0.4
927,963 - +0.8
928,017 - +1.0
928,077 - -0.8

Or see this region's nucleotide sequence