Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18660

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18655 and CSW01_18660 are separated by 135 nucleotidesCSW01_18660 and CSW01_18665 are separated by 18 nucleotides CSW01_18655: CSW01_18655 - hypothetical protein, at 854,218 to 855,054 _18655 CSW01_18660: CSW01_18660 - glycerate kinase, at 855,190 to 856,323 _18660 CSW01_18665: CSW01_18665 - permease, at 856,342 to 857,694 _18665 Position (kb) 855 856 857Strain fitness (log2 ratio) -2 -1 0 1 2 3at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.318 kb on + strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.326 kb on - strand, within CSW01_18655at 854.350 kb on + strand, within CSW01_18655at 854.382 kb on + strand, within CSW01_18655at 854.382 kb on + strand, within CSW01_18655at 854.387 kb on + strand, within CSW01_18655at 854.395 kb on - strand, within CSW01_18655at 854.413 kb on + strand, within CSW01_18655at 854.423 kb on + strand, within CSW01_18655at 854.453 kb on + strand, within CSW01_18655at 854.506 kb on + strand, within CSW01_18655at 854.514 kb on - strand, within CSW01_18655at 854.514 kb on - strand, within CSW01_18655at 854.521 kb on + strand, within CSW01_18655at 854.522 kb on + strand, within CSW01_18655at 854.530 kb on - strand, within CSW01_18655at 854.678 kb on + strand, within CSW01_18655at 854.926 kb on - strand, within CSW01_18655at 854.938 kb on - strand, within CSW01_18655at 855.028 kb on - strandat 855.028 kb on - strandat 855.119 kb on - strandat 855.241 kb on + strandat 855.321 kb on + strand, within CSW01_18660at 855.350 kb on - strand, within CSW01_18660at 855.375 kb on + strand, within CSW01_18660at 855.375 kb on + strand, within CSW01_18660at 855.383 kb on - strand, within CSW01_18660at 855.453 kb on - strand, within CSW01_18660at 855.508 kb on - strand, within CSW01_18660at 855.508 kb on - strand, within CSW01_18660at 855.510 kb on - strand, within CSW01_18660at 855.593 kb on - strand, within CSW01_18660at 855.603 kb on - strand, within CSW01_18660at 855.603 kb on - strand, within CSW01_18660at 855.705 kb on + strand, within CSW01_18660at 855.747 kb on - strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.917 kb on + strand, within CSW01_18660at 855.965 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.030 kb on - strand, within CSW01_18660at 856.040 kb on + strand, within CSW01_18660at 856.185 kb on + strand, within CSW01_18660at 856.229 kb on + strandat 856.357 kb on + strandat 856.357 kb on + strandat 856.365 kb on + strandat 856.365 kb on + strandat 856.395 kb on + strandat 856.431 kb on + strandat 856.534 kb on - strand, within CSW01_18665at 856.584 kb on + strand, within CSW01_18665at 856.600 kb on - strand, within CSW01_18665at 856.705 kb on + strand, within CSW01_18665at 856.705 kb on + strand, within CSW01_18665at 856.726 kb on - strand, within CSW01_18665at 856.867 kb on - strand, within CSW01_18665at 856.902 kb on + strand, within CSW01_18665at 856.961 kb on - strand, within CSW01_18665at 857.013 kb on - strand, within CSW01_18665at 857.039 kb on - strand, within CSW01_18665at 857.040 kb on - strand, within CSW01_18665at 857.121 kb on - strand, within CSW01_18665at 857.121 kb on - strand, within CSW01_18665at 857.159 kb on - strand, within CSW01_18665at 857.214 kb on + strand, within CSW01_18665at 857.244 kb on - strand, within CSW01_18665at 857.256 kb on - strand, within CSW01_18665at 857.273 kb on + strand, within CSW01_18665at 857.283 kb on + strand, within CSW01_18665

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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854,318 + CSW01_18655 0.12 +0.3
854,318 + CSW01_18655 0.12 +0.7
854,318 + CSW01_18655 0.12 -0.6
854,318 + CSW01_18655 0.12 -0.1
854,318 + CSW01_18655 0.12 +0.4
854,318 + CSW01_18655 0.12 +0.9
854,318 + CSW01_18655 0.12 +0.1
854,318 + CSW01_18655 0.12 -1.6
854,318 + CSW01_18655 0.12 +0.5
854,318 + CSW01_18655 0.12 -0.2
854,326 - CSW01_18655 0.13 +1.3
854,326 - CSW01_18655 0.13 -0.3
854,326 - CSW01_18655 0.13 -1.1
854,326 - CSW01_18655 0.13 +0.1
854,326 - CSW01_18655 0.13 -0.4
854,326 - CSW01_18655 0.13 -2.0
854,326 - CSW01_18655 0.13 +0.4
854,326 - CSW01_18655 0.13 +0.1
854,326 - CSW01_18655 0.13 +0.2
854,326 - CSW01_18655 0.13 +0.4
854,326 - CSW01_18655 0.13 +0.4
854,326 - CSW01_18655 0.13 +1.8
854,350 + CSW01_18655 0.16 -0.2
854,382 + CSW01_18655 0.20 +0.0
854,382 + CSW01_18655 0.20 +1.2
854,387 + CSW01_18655 0.20 +0.3
854,395 - CSW01_18655 0.21 -0.2
854,413 + CSW01_18655 0.23 -0.0
854,423 + CSW01_18655 0.24 +0.6
854,453 + CSW01_18655 0.28 +1.8
854,506 + CSW01_18655 0.34 -0.0
854,514 - CSW01_18655 0.35 -0.0
854,514 - CSW01_18655 0.35 +0.3
854,521 + CSW01_18655 0.36 +0.5
854,522 + CSW01_18655 0.36 -0.6
854,530 - CSW01_18655 0.37 -1.1
854,678 + CSW01_18655 0.55 +0.5
854,926 - CSW01_18655 0.85 -1.7
854,938 - CSW01_18655 0.86 +0.2
855,028 - +0.8
855,028 - -0.6
855,119 - -0.6
855,241 + -0.5
855,321 + CSW01_18660 0.12 +1.5
855,350 - CSW01_18660 0.14 -0.0
855,375 + CSW01_18660 0.16 -0.3
855,375 + CSW01_18660 0.16 -0.4
855,383 - CSW01_18660 0.17 -0.1
855,453 - CSW01_18660 0.23 -0.7
855,508 - CSW01_18660 0.28 +0.2
855,508 - CSW01_18660 0.28 +0.4
855,510 - CSW01_18660 0.28 +0.7
855,593 - CSW01_18660 0.36 +0.8
855,603 - CSW01_18660 0.36 -0.4
855,603 - CSW01_18660 0.36 +0.5
855,705 + CSW01_18660 0.45 +0.3
855,747 - CSW01_18660 0.49 +0.7
855,771 + CSW01_18660 0.51 -0.5
855,771 + CSW01_18660 0.51 -0.2
855,771 + CSW01_18660 0.51 -0.1
855,917 + CSW01_18660 0.64 +0.8
855,965 + CSW01_18660 0.68 -0.6
856,002 + CSW01_18660 0.72 +1.5
856,002 + CSW01_18660 0.72 -0.5
856,002 + CSW01_18660 0.72 +1.8
856,002 + CSW01_18660 0.72 +0.8
856,010 - CSW01_18660 0.72 +1.8
856,010 - CSW01_18660 0.72 +0.8
856,010 - CSW01_18660 0.72 -0.2
856,010 - CSW01_18660 0.72 +1.0
856,010 - CSW01_18660 0.72 +2.2
856,030 - CSW01_18660 0.74 +1.6
856,040 + CSW01_18660 0.75 -0.1
856,185 + CSW01_18660 0.88 -0.2
856,229 + -0.1
856,357 + -0.0
856,357 + +0.2
856,365 + +0.2
856,365 + -0.5
856,395 + +0.9
856,431 + -1.6
856,534 - CSW01_18665 0.14 +0.3
856,584 + CSW01_18665 0.18 -0.6
856,600 - CSW01_18665 0.19 +1.5
856,705 + CSW01_18665 0.27 -1.2
856,705 + CSW01_18665 0.27 -0.2
856,726 - CSW01_18665 0.28 -0.4
856,867 - CSW01_18665 0.39 +1.1
856,902 + CSW01_18665 0.41 +1.5
856,961 - CSW01_18665 0.46 +3.4
857,013 - CSW01_18665 0.50 +0.2
857,039 - CSW01_18665 0.52 +0.3
857,040 - CSW01_18665 0.52 -0.9
857,121 - CSW01_18665 0.58 +0.2
857,121 - CSW01_18665 0.58 -0.0
857,159 - CSW01_18665 0.60 +0.8
857,214 + CSW01_18665 0.64 -0.1
857,244 - CSW01_18665 0.67 +0.3
857,256 - CSW01_18665 0.68 +0.3
857,273 + CSW01_18665 0.69 +0.4
857,283 + CSW01_18665 0.70 -0.5

Or see this region's nucleotide sequence