Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18420

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18410 and CSW01_18415 are separated by 8 nucleotidesCSW01_18415 and CSW01_18420 are separated by 161 nucleotidesCSW01_18420 and CSW01_18425 are separated by 7 nucleotides CSW01_18410: CSW01_18410 - ABC transporter ATP-binding protein, at 804,564 to 805,247 _18410 CSW01_18415: CSW01_18415 - hypothetical protein, at 805,256 to 805,927 _18415 CSW01_18420: CSW01_18420 - hypothetical protein, at 806,089 to 806,232 _18420 CSW01_18425: CSW01_18425 - oxidoreductase, at 806,240 to 807,163 _18425 Position (kb) 806 807Strain fitness (log2 ratio) -1 0 1 2at 805.124 kb on + strand, within CSW01_18410at 805.132 kb on + strand, within CSW01_18410at 805.140 kb on - strand, within CSW01_18410at 805.149 kb on + strand, within CSW01_18410at 805.157 kb on - strand, within CSW01_18410at 805.157 kb on - strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.163 kb on + strand, within CSW01_18410at 805.181 kb on - strandat 805.182 kb on + strandat 805.182 kb on + strandat 805.187 kb on + strandat 805.190 kb on - strandat 805.253 kb on + strandat 805.253 kb on + strandat 805.253 kb on + strandat 805.274 kb on + strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.337 kb on - strand, within CSW01_18415at 805.383 kb on - strand, within CSW01_18415at 805.464 kb on - strand, within CSW01_18415at 805.561 kb on + strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415at 805.577 kb on + strand, within CSW01_18415at 805.707 kb on - strand, within CSW01_18415at 805.709 kb on + strand, within CSW01_18415at 805.724 kb on + strand, within CSW01_18415at 805.778 kb on + strand, within CSW01_18415at 805.813 kb on + strand, within CSW01_18415at 805.813 kb on + strand, within CSW01_18415at 805.822 kb on - strand, within CSW01_18415at 805.826 kb on + strand, within CSW01_18415at 805.856 kb on + strand, within CSW01_18415at 805.983 kb on - strandat 806.079 kb on - strandat 806.135 kb on + strand, within CSW01_18420at 806.196 kb on + strand, within CSW01_18420at 806.196 kb on + strand, within CSW01_18420at 806.204 kb on - strand, within CSW01_18420at 806.209 kb on + strand, within CSW01_18420at 806.237 kb on - strandat 806.249 kb on + strandat 806.249 kb on + strandat 806.249 kb on + strandat 806.257 kb on - strandat 806.306 kb on + strandat 806.424 kb on - strand, within CSW01_18425at 806.428 kb on + strand, within CSW01_18425at 806.446 kb on - strand, within CSW01_18425at 806.451 kb on - strand, within CSW01_18425at 806.509 kb on + strand, within CSW01_18425at 806.602 kb on - strand, within CSW01_18425at 806.608 kb on - strand, within CSW01_18425at 806.618 kb on - strand, within CSW01_18425at 806.626 kb on - strand, within CSW01_18425at 806.653 kb on + strand, within CSW01_18425at 806.658 kb on + strand, within CSW01_18425at 806.658 kb on + strand, within CSW01_18425at 806.697 kb on + strand, within CSW01_18425at 806.705 kb on - strand, within CSW01_18425at 806.803 kb on + strand, within CSW01_18425at 806.887 kb on + strand, within CSW01_18425at 806.895 kb on - strand, within CSW01_18425at 806.929 kb on + strand, within CSW01_18425at 806.950 kb on - strand, within CSW01_18425at 806.970 kb on - strand, within CSW01_18425at 807.006 kb on + strand, within CSW01_18425at 807.027 kb on - strand, within CSW01_18425at 807.049 kb on - strand, within CSW01_18425at 807.052 kb on + strand, within CSW01_18425at 807.090 kb on + strandat 807.099 kb on + strandat 807.109 kb on + strandat 807.117 kb on - strandat 807.117 kb on - strandat 807.117 kb on - strandat 807.117 kb on - strandat 807.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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805,124 + CSW01_18410 0.82 +0.9
805,132 + CSW01_18410 0.83 +0.0
805,140 - CSW01_18410 0.84 +0.3
805,149 + CSW01_18410 0.86 +0.3
805,157 - CSW01_18410 0.87 -0.5
805,157 - CSW01_18410 0.87 +0.6
805,163 + CSW01_18410 0.88 -0.3
805,163 + CSW01_18410 0.88 +0.5
805,163 + CSW01_18410 0.88 -0.2
805,181 - -0.1
805,182 + +0.2
805,182 + -0.1
805,187 + -1.0
805,190 - +0.1
805,253 + +0.3
805,253 + +0.1
805,253 + +0.3
805,274 + -0.1
805,282 - -1.1
805,282 - +0.6
805,282 - +0.1
805,337 - CSW01_18415 0.12 +0.3
805,383 - CSW01_18415 0.19 +0.1
805,464 - CSW01_18415 0.31 -0.0
805,561 + CSW01_18415 0.45 +0.7
805,569 - CSW01_18415 0.47 -0.9
805,569 - CSW01_18415 0.47 +0.2
805,577 + CSW01_18415 0.48 +0.1
805,707 - CSW01_18415 0.67 -0.4
805,709 + CSW01_18415 0.67 -0.4
805,724 + CSW01_18415 0.70 +0.4
805,778 + CSW01_18415 0.78 -0.4
805,813 + CSW01_18415 0.83 -0.6
805,813 + CSW01_18415 0.83 +0.2
805,822 - CSW01_18415 0.84 +0.1
805,826 + CSW01_18415 0.85 -0.7
805,856 + CSW01_18415 0.89 +0.1
805,983 - +0.3
806,079 - +2.3
806,135 + CSW01_18420 0.32 +0.1
806,196 + CSW01_18420 0.74 -0.8
806,196 + CSW01_18420 0.74 +0.6
806,204 - CSW01_18420 0.80 -1.5
806,209 + CSW01_18420 0.83 -1.3
806,237 - -0.9
806,249 + +0.2
806,249 + -0.5
806,249 + -0.2
806,257 - +0.2
806,306 + -0.1
806,424 - CSW01_18425 0.20 +0.9
806,428 + CSW01_18425 0.20 +0.4
806,446 - CSW01_18425 0.22 -1.0
806,451 - CSW01_18425 0.23 -0.5
806,509 + CSW01_18425 0.29 +1.9
806,602 - CSW01_18425 0.39 +0.1
806,608 - CSW01_18425 0.40 +1.7
806,618 - CSW01_18425 0.41 +0.9
806,626 - CSW01_18425 0.42 +0.0
806,653 + CSW01_18425 0.45 -0.3
806,658 + CSW01_18425 0.45 -1.3
806,658 + CSW01_18425 0.45 +0.1
806,697 + CSW01_18425 0.49 +0.0
806,705 - CSW01_18425 0.50 +0.5
806,803 + CSW01_18425 0.61 +0.9
806,887 + CSW01_18425 0.70 +0.7
806,895 - CSW01_18425 0.71 -0.2
806,929 + CSW01_18425 0.75 -0.1
806,950 - CSW01_18425 0.77 +0.2
806,970 - CSW01_18425 0.79 -0.1
807,006 + CSW01_18425 0.83 -0.1
807,027 - CSW01_18425 0.85 +0.2
807,049 - CSW01_18425 0.88 +0.5
807,052 + CSW01_18425 0.88 -1.5
807,090 + +0.8
807,099 + -0.2
807,109 + +0.4
807,117 - -0.3
807,117 - -0.6
807,117 - +1.3
807,117 - +0.3
807,205 + -0.0

Or see this region's nucleotide sequence