Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18365

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18355 and CSW01_18360 are separated by 300 nucleotidesCSW01_18360 and CSW01_18365 are separated by 48 nucleotidesCSW01_18365 and CSW01_18370 are separated by 185 nucleotides CSW01_18355: CSW01_18355 - aldehyde dehydrogenase, at 783,914 to 785,443 _18355 CSW01_18360: CSW01_18360 - hypothetical protein, at 785,744 to 785,968 _18360 CSW01_18365: CSW01_18365 - LysE family translocator, at 786,017 to 786,631 _18365 CSW01_18370: CSW01_18370 - L-methionine/branched-chain amino acid transporter, at 786,817 to 788,061 _18370 Position (kb) 786 787Strain fitness (log2 ratio) -2 -1 0 1at 785.025 kb on + strand, within CSW01_18355at 785.033 kb on - strand, within CSW01_18355at 785.121 kb on + strand, within CSW01_18355at 785.164 kb on + strand, within CSW01_18355at 785.164 kb on + strand, within CSW01_18355at 785.175 kb on + strand, within CSW01_18355at 785.317 kb on - strandat 785.384 kb on + strandat 785.384 kb on + strandat 785.404 kb on + strandat 785.404 kb on + strandat 785.404 kb on + strandat 785.404 kb on + strandat 785.407 kb on - strandat 785.412 kb on - strandat 785.424 kb on - strandat 785.452 kb on + strandat 785.460 kb on - strandat 785.462 kb on + strandat 785.490 kb on - strandat 785.492 kb on - strandat 785.537 kb on + strandat 785.578 kb on + strandat 785.578 kb on + strandat 785.586 kb on - strandat 785.718 kb on - strandat 785.763 kb on + strandat 785.770 kb on - strand, within CSW01_18360at 785.786 kb on - strand, within CSW01_18360at 785.793 kb on + strand, within CSW01_18360at 785.984 kb on + strandat 785.991 kb on - strandat 785.991 kb on - strandat 785.995 kb on + strandat 786.003 kb on - strandat 786.003 kb on - strandat 786.014 kb on + strandat 786.014 kb on + strandat 786.022 kb on - strandat 786.060 kb on + strandat 786.131 kb on - strand, within CSW01_18365at 786.240 kb on + strand, within CSW01_18365at 786.301 kb on + strand, within CSW01_18365at 786.411 kb on + strand, within CSW01_18365at 786.419 kb on + strand, within CSW01_18365at 786.464 kb on + strand, within CSW01_18365at 786.566 kb on - strand, within CSW01_18365at 786.884 kb on + strandat 786.944 kb on + strand, within CSW01_18370at 786.982 kb on + strand, within CSW01_18370at 786.982 kb on + strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 787.052 kb on + strand, within CSW01_18370at 787.088 kb on - strand, within CSW01_18370at 787.126 kb on + strand, within CSW01_18370at 787.153 kb on + strand, within CSW01_18370at 787.153 kb on + strand, within CSW01_18370at 787.153 kb on + strand, within CSW01_18370at 787.155 kb on - strand, within CSW01_18370at 787.168 kb on + strand, within CSW01_18370at 787.346 kb on + strand, within CSW01_18370at 787.420 kb on - strand, within CSW01_18370at 787.542 kb on - strand, within CSW01_18370at 787.556 kb on - strand, within CSW01_18370at 787.592 kb on + strand, within CSW01_18370at 787.594 kb on + strand, within CSW01_18370at 787.594 kb on + strand, within CSW01_18370at 787.621 kb on + strand, within CSW01_18370at 787.621 kb on + strand, within CSW01_18370

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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785,025 + CSW01_18355 0.73 -0.5
785,033 - CSW01_18355 0.73 +0.7
785,121 + CSW01_18355 0.79 +0.1
785,164 + CSW01_18355 0.82 -0.1
785,164 + CSW01_18355 0.82 -0.2
785,175 + CSW01_18355 0.82 -0.4
785,317 - -0.8
785,384 + +0.3
785,384 + -2.2
785,404 + +0.3
785,404 + +0.1
785,404 + +0.7
785,404 + +0.1
785,407 - +0.1
785,412 - -0.1
785,424 - -0.1
785,452 + -0.5
785,460 - +0.0
785,462 + -0.2
785,490 - -0.3
785,492 - +1.1
785,537 + -0.4
785,578 + -0.1
785,578 + +0.3
785,586 - +0.8
785,718 - +0.1
785,763 + -0.3
785,770 - CSW01_18360 0.12 +0.2
785,786 - CSW01_18360 0.19 +0.3
785,793 + CSW01_18360 0.22 +0.2
785,984 + +0.0
785,991 - -1.3
785,991 - +1.1
785,995 + +0.1
786,003 - +0.1
786,003 - +0.1
786,014 + +1.4
786,014 + -0.9
786,022 - -0.5
786,060 + -0.2
786,131 - CSW01_18365 0.19 -0.0
786,240 + CSW01_18365 0.36 -0.4
786,301 + CSW01_18365 0.46 -1.0
786,411 + CSW01_18365 0.64 +0.0
786,419 + CSW01_18365 0.65 -0.9
786,464 + CSW01_18365 0.73 -0.9
786,566 - CSW01_18365 0.89 -0.1
786,884 + +0.7
786,944 + CSW01_18370 0.10 -0.9
786,982 + CSW01_18370 0.13 +0.1
786,982 + CSW01_18370 0.13 +0.5
786,990 - CSW01_18370 0.14 +1.7
786,990 - CSW01_18370 0.14 -0.2
786,990 - CSW01_18370 0.14 -1.2
786,990 - CSW01_18370 0.14 +0.1
786,990 - CSW01_18370 0.14 -2.1
787,052 + CSW01_18370 0.19 +0.9
787,088 - CSW01_18370 0.22 -0.9
787,126 + CSW01_18370 0.25 +1.0
787,153 + CSW01_18370 0.27 -0.1
787,153 + CSW01_18370 0.27 -0.5
787,153 + CSW01_18370 0.27 -2.0
787,155 - CSW01_18370 0.27 +0.1
787,168 + CSW01_18370 0.28 -0.6
787,346 + CSW01_18370 0.42 +0.2
787,420 - CSW01_18370 0.48 -0.6
787,542 - CSW01_18370 0.58 +1.1
787,556 - CSW01_18370 0.59 +0.2
787,592 + CSW01_18370 0.62 -0.1
787,594 + CSW01_18370 0.62 -0.1
787,594 + CSW01_18370 0.62 -1.1
787,621 + CSW01_18370 0.65 +0.3
787,621 + CSW01_18370 0.65 -1.8

Or see this region's nucleotide sequence