Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18250

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18245 and CSW01_18250 are separated by 184 nucleotidesCSW01_18250 and CSW01_18255 are separated by 28 nucleotides CSW01_18245: CSW01_18245 - magnesium transporter MgtE, at 762,457 to 763,820 _18245 CSW01_18250: CSW01_18250 - co-chaperone GroES, at 764,005 to 764,295 _18250 CSW01_18255: CSW01_18255 - molecular chaperone GroEL, at 764,324 to 765,916 _18255 Position (kb) 764 765Strain fitness (log2 ratio) -1 0 1at 763.088 kb on + strand, within CSW01_18245at 763.093 kb on + strand, within CSW01_18245at 763.096 kb on - strand, within CSW01_18245at 763.234 kb on + strand, within CSW01_18245at 763.275 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.330 kb on - strand, within CSW01_18245at 763.398 kb on - strand, within CSW01_18245at 763.454 kb on + strand, within CSW01_18245at 763.456 kb on - strand, within CSW01_18245at 763.506 kb on + strand, within CSW01_18245at 763.560 kb on - strand, within CSW01_18245at 763.732 kb on + strandat 763.753 kb on - strandat 763.839 kb on + strandat 763.913 kb on + strandat 763.951 kb on + strandat 763.959 kb on - strandat 764.134 kb on + strand, within CSW01_18250at 764.134 kb on + strand, within CSW01_18250at 764.134 kb on + strand, within CSW01_18250at 764.141 kb on - strand, within CSW01_18250at 764.142 kb on - strand, within CSW01_18250at 764.142 kb on - strand, within CSW01_18250at 764.142 kb on - strand, within CSW01_18250at 764.219 kb on - strand, within CSW01_18250at 764.260 kb on - strand, within CSW01_18250at 764.352 kb on - strandat 764.418 kb on + strandat 764.449 kb on + strandat 764.449 kb on + strandat 764.457 kb on - strandat 764.603 kb on + strand, within CSW01_18255at 764.615 kb on + strand, within CSW01_18255at 764.631 kb on + strand, within CSW01_18255at 764.632 kb on + strand, within CSW01_18255at 764.651 kb on + strand, within CSW01_18255at 764.651 kb on + strand, within CSW01_18255at 764.659 kb on - strand, within CSW01_18255at 764.659 kb on - strand, within CSW01_18255at 764.683 kb on + strand, within CSW01_18255at 764.739 kb on - strand, within CSW01_18255at 764.756 kb on + strand, within CSW01_18255at 764.821 kb on + strand, within CSW01_18255at 764.840 kb on + strand, within CSW01_18255at 764.852 kb on + strand, within CSW01_18255at 764.861 kb on + strand, within CSW01_18255at 764.898 kb on - strand, within CSW01_18255at 764.903 kb on - strand, within CSW01_18255at 764.966 kb on - strand, within CSW01_18255at 764.971 kb on - strand, within CSW01_18255at 764.973 kb on - strand, within CSW01_18255at 765.043 kb on + strand, within CSW01_18255at 765.070 kb on - strand, within CSW01_18255at 765.155 kb on + strand, within CSW01_18255at 765.175 kb on + strand, within CSW01_18255at 765.175 kb on + strand, within CSW01_18255at 765.175 kb on + strand, within CSW01_18255at 765.269 kb on + strand, within CSW01_18255

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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763,088 + CSW01_18245 0.46 -0.6
763,093 + CSW01_18245 0.47 -0.2
763,096 - CSW01_18245 0.47 +0.3
763,234 + CSW01_18245 0.57 -0.7
763,275 + CSW01_18245 0.60 -0.6
763,322 + CSW01_18245 0.63 +0.1
763,322 + CSW01_18245 0.63 -0.9
763,322 + CSW01_18245 0.63 -0.1
763,322 + CSW01_18245 0.63 +0.3
763,322 + CSW01_18245 0.63 +1.0
763,322 + CSW01_18245 0.63 -0.6
763,330 - CSW01_18245 0.64 +1.1
763,398 - CSW01_18245 0.69 -0.7
763,454 + CSW01_18245 0.73 -0.0
763,456 - CSW01_18245 0.73 -0.5
763,506 + CSW01_18245 0.77 +0.3
763,560 - CSW01_18245 0.81 +0.2
763,732 + -1.5
763,753 - -0.3
763,839 + +0.6
763,913 + +0.9
763,951 + -0.5
763,959 - +0.9
764,134 + CSW01_18250 0.44 -1.3
764,134 + CSW01_18250 0.44 -0.9
764,134 + CSW01_18250 0.44 -1.0
764,141 - CSW01_18250 0.47 -0.7
764,142 - CSW01_18250 0.47 +0.1
764,142 - CSW01_18250 0.47 +1.5
764,142 - CSW01_18250 0.47 -0.3
764,219 - CSW01_18250 0.74 -0.2
764,260 - CSW01_18250 0.88 +0.1
764,352 - +1.7
764,418 + +0.2
764,449 + +0.8
764,449 + -0.6
764,457 - -1.1
764,603 + CSW01_18255 0.18 +1.1
764,615 + CSW01_18255 0.18 -0.2
764,631 + CSW01_18255 0.19 +0.6
764,632 + CSW01_18255 0.19 +0.6
764,651 + CSW01_18255 0.21 +1.4
764,651 + CSW01_18255 0.21 -1.5
764,659 - CSW01_18255 0.21 +0.5
764,659 - CSW01_18255 0.21 -0.2
764,683 + CSW01_18255 0.23 -0.5
764,739 - CSW01_18255 0.26 -0.3
764,756 + CSW01_18255 0.27 +0.7
764,821 + CSW01_18255 0.31 +0.4
764,840 + CSW01_18255 0.32 +1.1
764,852 + CSW01_18255 0.33 +0.2
764,861 + CSW01_18255 0.34 +0.8
764,898 - CSW01_18255 0.36 +0.7
764,903 - CSW01_18255 0.36 +0.5
764,966 - CSW01_18255 0.40 -0.4
764,971 - CSW01_18255 0.41 +0.6
764,973 - CSW01_18255 0.41 -0.4
765,043 + CSW01_18255 0.45 -0.0
765,070 - CSW01_18255 0.47 +0.4
765,155 + CSW01_18255 0.52 -0.5
765,175 + CSW01_18255 0.53 -0.1
765,175 + CSW01_18255 0.53 -0.1
765,175 + CSW01_18255 0.53 +0.5
765,269 + CSW01_18255 0.59 -0.1

Or see this region's nucleotide sequence