Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18245

Experiment: LB_Anaerobic_18HR_ZN20B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18235 and CSW01_18240 are separated by 368 nucleotidesCSW01_18240 and CSW01_18245 are separated by 2 nucleotidesCSW01_18245 and CSW01_18250 are separated by 184 nucleotidesCSW01_18250 and CSW01_18255 are separated by 28 nucleotides CSW01_18235: CSW01_18235 - arginine decarboxylase, at 759,537 to 761,501 _18235 CSW01_18240: CSW01_18240 - mechanosensitive ion channel protein, at 761,870 to 762,454 _18240 CSW01_18245: CSW01_18245 - magnesium transporter MgtE, at 762,457 to 763,820 _18245 CSW01_18250: CSW01_18250 - co-chaperone GroES, at 764,005 to 764,295 _18250 CSW01_18255: CSW01_18255 - molecular chaperone GroEL, at 764,324 to 765,916 _18255 Position (kb) 762 763 764Strain fitness (log2 ratio) -1 0 1 2at 761.457 kb on + strandat 761.499 kb on - strandat 761.510 kb on + strandat 761.539 kb on + strandat 761.686 kb on - strandat 761.760 kb on + strandat 761.763 kb on + strandat 761.763 kb on + strandat 761.763 kb on + strandat 761.763 kb on + strandat 761.768 kb on + strandat 761.771 kb on - strandat 761.781 kb on - strandat 761.781 kb on - strandat 761.781 kb on - strandat 761.956 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.982 kb on + strand, within CSW01_18240at 761.989 kb on - strand, within CSW01_18240at 761.989 kb on - strand, within CSW01_18240at 761.989 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 761.990 kb on - strand, within CSW01_18240at 762.053 kb on + strand, within CSW01_18240at 762.118 kb on + strand, within CSW01_18240at 762.120 kb on + strand, within CSW01_18240at 762.128 kb on - strand, within CSW01_18240at 762.128 kb on - strand, within CSW01_18240at 762.135 kb on + strand, within CSW01_18240at 762.185 kb on + strand, within CSW01_18240at 762.188 kb on - strand, within CSW01_18240at 762.198 kb on - strand, within CSW01_18240at 762.291 kb on - strand, within CSW01_18240at 762.327 kb on + strand, within CSW01_18240at 762.327 kb on + strand, within CSW01_18240at 762.327 kb on + strand, within CSW01_18240at 762.335 kb on - strand, within CSW01_18240at 762.439 kb on + strandat 762.447 kb on - strandat 762.447 kb on - strandat 762.562 kb on - strandat 762.642 kb on - strand, within CSW01_18245at 762.658 kb on + strand, within CSW01_18245at 762.751 kb on - strand, within CSW01_18245at 762.752 kb on - strand, within CSW01_18245at 762.781 kb on + strand, within CSW01_18245at 762.796 kb on + strand, within CSW01_18245at 762.897 kb on - strand, within CSW01_18245at 762.949 kb on + strand, within CSW01_18245at 762.968 kb on + strand, within CSW01_18245at 763.088 kb on + strand, within CSW01_18245at 763.093 kb on + strand, within CSW01_18245at 763.096 kb on - strand, within CSW01_18245at 763.234 kb on + strand, within CSW01_18245at 763.275 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.322 kb on + strand, within CSW01_18245at 763.330 kb on - strand, within CSW01_18245at 763.398 kb on - strand, within CSW01_18245at 763.454 kb on + strand, within CSW01_18245at 763.456 kb on - strand, within CSW01_18245at 763.506 kb on + strand, within CSW01_18245at 763.560 kb on - strand, within CSW01_18245at 763.732 kb on + strandat 763.753 kb on - strandat 763.839 kb on + strandat 763.913 kb on + strandat 763.951 kb on + strandat 763.959 kb on - strandat 764.134 kb on + strand, within CSW01_18250at 764.134 kb on + strand, within CSW01_18250at 764.134 kb on + strand, within CSW01_18250at 764.141 kb on - strand, within CSW01_18250at 764.142 kb on - strand, within CSW01_18250at 764.142 kb on - strand, within CSW01_18250at 764.142 kb on - strand, within CSW01_18250at 764.219 kb on - strand, within CSW01_18250at 764.260 kb on - strand, within CSW01_18250at 764.352 kb on - strandat 764.418 kb on + strandat 764.449 kb on + strandat 764.449 kb on + strandat 764.457 kb on - strandat 764.603 kb on + strand, within CSW01_18255at 764.615 kb on + strand, within CSW01_18255at 764.631 kb on + strand, within CSW01_18255at 764.632 kb on + strand, within CSW01_18255at 764.651 kb on + strand, within CSW01_18255at 764.651 kb on + strand, within CSW01_18255at 764.659 kb on - strand, within CSW01_18255at 764.659 kb on - strand, within CSW01_18255at 764.683 kb on + strand, within CSW01_18255at 764.739 kb on - strand, within CSW01_18255at 764.756 kb on + strand, within CSW01_18255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
remove
761,457 + -0.4
761,499 - -0.6
761,510 + +0.2
761,539 + +0.8
761,686 - +0.6
761,760 + +0.5
761,763 + +0.3
761,763 + -0.2
761,763 + +0.2
761,763 + -0.2
761,768 + +0.6
761,771 - +1.5
761,781 - -0.0
761,781 - +0.3
761,781 - +0.9
761,956 + CSW01_18240 0.15 +0.2
761,982 + CSW01_18240 0.19 -0.2
761,982 + CSW01_18240 0.19 +1.1
761,982 + CSW01_18240 0.19 -0.1
761,982 + CSW01_18240 0.19 +0.1
761,982 + CSW01_18240 0.19 +1.8
761,982 + CSW01_18240 0.19 -0.3
761,989 - CSW01_18240 0.20 +1.0
761,989 - CSW01_18240 0.20 +0.6
761,989 - CSW01_18240 0.20 +0.6
761,990 - CSW01_18240 0.21 +0.4
761,990 - CSW01_18240 0.21 +0.4
761,990 - CSW01_18240 0.21 +0.1
761,990 - CSW01_18240 0.21 -0.4
761,990 - CSW01_18240 0.21 +0.3
761,990 - CSW01_18240 0.21 +0.4
761,990 - CSW01_18240 0.21 +0.6
761,990 - CSW01_18240 0.21 -0.6
761,990 - CSW01_18240 0.21 +0.8
762,053 + CSW01_18240 0.31 +0.9
762,118 + CSW01_18240 0.42 -0.6
762,120 + CSW01_18240 0.43 -0.1
762,128 - CSW01_18240 0.44 +0.4
762,128 - CSW01_18240 0.44 -0.4
762,135 + CSW01_18240 0.45 -1.1
762,185 + CSW01_18240 0.54 -0.5
762,188 - CSW01_18240 0.54 +0.3
762,198 - CSW01_18240 0.56 +0.2
762,291 - CSW01_18240 0.72 -0.1
762,327 + CSW01_18240 0.78 +0.4
762,327 + CSW01_18240 0.78 -0.0
762,327 + CSW01_18240 0.78 -0.8
762,335 - CSW01_18240 0.79 -1.5
762,439 + +0.9
762,447 - -0.2
762,447 - +0.5
762,562 - -0.2
762,642 - CSW01_18245 0.14 -0.6
762,658 + CSW01_18245 0.15 +0.7
762,751 - CSW01_18245 0.22 -0.1
762,752 - CSW01_18245 0.22 +1.1
762,781 + CSW01_18245 0.24 -0.6
762,796 + CSW01_18245 0.25 -0.1
762,897 - CSW01_18245 0.32 -0.1
762,949 + CSW01_18245 0.36 +0.5
762,968 + CSW01_18245 0.37 -0.1
763,088 + CSW01_18245 0.46 -0.6
763,093 + CSW01_18245 0.47 -0.2
763,096 - CSW01_18245 0.47 +0.3
763,234 + CSW01_18245 0.57 -0.7
763,275 + CSW01_18245 0.60 -0.6
763,322 + CSW01_18245 0.63 +0.1
763,322 + CSW01_18245 0.63 -0.9
763,322 + CSW01_18245 0.63 -0.1
763,322 + CSW01_18245 0.63 +0.3
763,322 + CSW01_18245 0.63 +1.0
763,322 + CSW01_18245 0.63 -0.6
763,330 - CSW01_18245 0.64 +1.1
763,398 - CSW01_18245 0.69 -0.7
763,454 + CSW01_18245 0.73 -0.0
763,456 - CSW01_18245 0.73 -0.5
763,506 + CSW01_18245 0.77 +0.3
763,560 - CSW01_18245 0.81 +0.2
763,732 + -1.5
763,753 - -0.3
763,839 + +0.6
763,913 + +0.9
763,951 + -0.5
763,959 - +0.9
764,134 + CSW01_18250 0.44 -1.3
764,134 + CSW01_18250 0.44 -0.9
764,134 + CSW01_18250 0.44 -1.0
764,141 - CSW01_18250 0.47 -0.7
764,142 - CSW01_18250 0.47 +0.1
764,142 - CSW01_18250 0.47 +1.5
764,142 - CSW01_18250 0.47 -0.3
764,219 - CSW01_18250 0.74 -0.2
764,260 - CSW01_18250 0.88 +0.1
764,352 - +1.7
764,418 + +0.2
764,449 + +0.8
764,449 + -0.6
764,457 - -1.1
764,603 + CSW01_18255 0.18 +1.1
764,615 + CSW01_18255 0.18 -0.2
764,631 + CSW01_18255 0.19 +0.6
764,632 + CSW01_18255 0.19 +0.6
764,651 + CSW01_18255 0.21 +1.4
764,651 + CSW01_18255 0.21 -1.5
764,659 - CSW01_18255 0.21 +0.5
764,659 - CSW01_18255 0.21 -0.2
764,683 + CSW01_18255 0.23 -0.5
764,739 - CSW01_18255 0.26 -0.3
764,756 + CSW01_18255 0.27 +0.7

Or see this region's nucleotide sequence