Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17690 and CSW01_17695 are separated by 78 nucleotides CSW01_17695 and CSW01_17700 overlap by 4 nucleotides CSW01_17700 and CSW01_17705 overlap by 83 nucleotides
CSW01_17690: CSW01_17690 - NADH-dependent alcohol dehydrogenase, at 640,838 to 641,986
_17690
CSW01_17695: CSW01_17695 - lysoplasmalogenase, at 642,065 to 642,754
_17695
CSW01_17700: CSW01_17700 - sigma-54-dependent Fis family transcriptional regulator, at 642,751 to 644,070
_17700
CSW01_17705: CSW01_17705 - two-component sensor histidine kinase, at 643,988 to 646,357
_17705
Position (kb) 642
643
644
645 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 641.893 kb on - strand at 641.990 kb on - strand at 642.261 kb on + strand, within CSW01_17695 at 642.269 kb on - strand, within CSW01_17695 at 642.305 kb on + strand, within CSW01_17695 at 642.408 kb on + strand, within CSW01_17695 at 642.427 kb on - strand, within CSW01_17695 at 642.429 kb on + strand, within CSW01_17695 at 642.500 kb on - strand, within CSW01_17695 at 642.500 kb on - strand, within CSW01_17695 at 642.564 kb on + strand, within CSW01_17695 at 642.571 kb on + strand, within CSW01_17695 at 642.571 kb on + strand, within CSW01_17695 at 642.579 kb on - strand, within CSW01_17695 at 642.584 kb on - strand, within CSW01_17695 at 642.597 kb on - strand, within CSW01_17695 at 642.613 kb on + strand, within CSW01_17695 at 642.635 kb on - strand, within CSW01_17695 at 642.719 kb on + strand at 642.728 kb on + strand at 642.833 kb on - strand at 642.833 kb on - strand at 642.919 kb on - strand, within CSW01_17700 at 643.001 kb on + strand, within CSW01_17700 at 643.009 kb on - strand, within CSW01_17700 at 643.009 kb on - strand, within CSW01_17700 at 643.070 kb on + strand, within CSW01_17700 at 643.075 kb on + strand, within CSW01_17700 at 643.092 kb on + strand, within CSW01_17700 at 643.100 kb on - strand, within CSW01_17700 at 643.100 kb on - strand, within CSW01_17700 at 643.298 kb on + strand, within CSW01_17700 at 643.306 kb on + strand, within CSW01_17700 at 643.326 kb on - strand, within CSW01_17700 at 643.349 kb on - strand, within CSW01_17700 at 643.378 kb on + strand, within CSW01_17700 at 643.386 kb on - strand, within CSW01_17700 at 643.431 kb on + strand, within CSW01_17700 at 643.431 kb on + strand, within CSW01_17700 at 643.441 kb on + strand, within CSW01_17700 at 643.449 kb on - strand, within CSW01_17700 at 643.656 kb on + strand, within CSW01_17700 at 643.729 kb on + strand, within CSW01_17700 at 643.762 kb on + strand, within CSW01_17700 at 643.770 kb on - strand, within CSW01_17700 at 643.805 kb on + strand, within CSW01_17700 at 643.805 kb on + strand, within CSW01_17700 at 643.805 kb on + strand, within CSW01_17700 at 643.805 kb on + strand, within CSW01_17700 at 643.839 kb on + strand, within CSW01_17700 at 644.006 kb on - strand at 644.126 kb on + strand at 644.186 kb on + strand at 644.187 kb on - strand at 644.196 kb on + strand at 644.204 kb on - strand at 644.227 kb on + strand, within CSW01_17705 at 644.230 kb on - strand, within CSW01_17705 at 644.240 kb on - strand, within CSW01_17705 at 644.253 kb on + strand, within CSW01_17705 at 644.261 kb on - strand, within CSW01_17705 at 644.270 kb on + strand, within CSW01_17705 at 644.307 kb on + strand, within CSW01_17705 at 644.307 kb on + strand, within CSW01_17705 at 644.307 kb on + strand, within CSW01_17705 at 644.315 kb on - strand, within CSW01_17705 at 644.317 kb on + strand, within CSW01_17705 at 644.325 kb on - strand, within CSW01_17705 at 644.498 kb on - strand, within CSW01_17705 at 644.561 kb on + strand, within CSW01_17705 at 644.561 kb on + strand, within CSW01_17705 at 644.730 kb on - strand, within CSW01_17705 at 644.842 kb on + strand, within CSW01_17705
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 641,893 - +0.4 641,990 - -0.7 642,261 + CSW01_17695 0.28 +0.0 642,269 - CSW01_17695 0.30 -0.3 642,305 + CSW01_17695 0.35 +0.3 642,408 + CSW01_17695 0.50 +0.1 642,427 - CSW01_17695 0.52 -0.5 642,429 + CSW01_17695 0.53 -0.2 642,500 - CSW01_17695 0.63 +0.2 642,500 - CSW01_17695 0.63 +0.7 642,564 + CSW01_17695 0.72 -0.5 642,571 + CSW01_17695 0.73 -0.2 642,571 + CSW01_17695 0.73 +0.4 642,579 - CSW01_17695 0.74 +2.9 642,584 - CSW01_17695 0.75 +0.7 642,597 - CSW01_17695 0.77 -0.3 642,613 + CSW01_17695 0.79 +0.8 642,635 - CSW01_17695 0.83 +0.1 642,719 + -1.1 642,728 + -0.3 642,833 - +0.5 642,833 - +0.7 642,919 - CSW01_17700 0.13 -0.4 643,001 + CSW01_17700 0.19 +0.3 643,009 - CSW01_17700 0.20 +0.8 643,009 - CSW01_17700 0.20 -0.3 643,070 + CSW01_17700 0.24 +0.9 643,075 + CSW01_17700 0.25 -0.4 643,092 + CSW01_17700 0.26 -0.1 643,100 - CSW01_17700 0.26 +0.3 643,100 - CSW01_17700 0.26 -0.3 643,298 + CSW01_17700 0.41 -0.2 643,306 + CSW01_17700 0.42 -0.6 643,326 - CSW01_17700 0.44 -0.2 643,349 - CSW01_17700 0.45 -0.2 643,378 + CSW01_17700 0.47 -0.2 643,386 - CSW01_17700 0.48 +0.6 643,431 + CSW01_17700 0.52 -0.1 643,431 + CSW01_17700 0.52 +0.4 643,441 + CSW01_17700 0.52 -0.4 643,449 - CSW01_17700 0.53 +0.8 643,656 + CSW01_17700 0.69 +1.2 643,729 + CSW01_17700 0.74 -0.4 643,762 + CSW01_17700 0.77 +1.2 643,770 - CSW01_17700 0.77 -0.3 643,805 + CSW01_17700 0.80 -0.5 643,805 + CSW01_17700 0.80 +0.1 643,805 + CSW01_17700 0.80 +1.5 643,805 + CSW01_17700 0.80 -2.2 643,839 + CSW01_17700 0.82 +0.3 644,006 - -0.3 644,126 + +0.2 644,186 + -0.0 644,187 - -0.8 644,196 + +0.3 644,204 - +0.2 644,227 + CSW01_17705 0.10 +0.5 644,230 - CSW01_17705 0.10 -0.1 644,240 - CSW01_17705 0.11 -0.6 644,253 + CSW01_17705 0.11 -0.5 644,261 - CSW01_17705 0.12 +0.7 644,270 + CSW01_17705 0.12 -0.7 644,307 + CSW01_17705 0.13 +0.2 644,307 + CSW01_17705 0.13 -0.5 644,307 + CSW01_17705 0.13 -1.2 644,315 - CSW01_17705 0.14 -0.7 644,317 + CSW01_17705 0.14 -0.8 644,325 - CSW01_17705 0.14 +0.2 644,498 - CSW01_17705 0.22 +0.1 644,561 + CSW01_17705 0.24 +0.9 644,561 + CSW01_17705 0.24 +1.9 644,730 - CSW01_17705 0.31 -0.6 644,842 + CSW01_17705 0.36 +0.3
Or see this region's nucleotide sequence