Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17615

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17610 and CSW01_17615 are separated by 67 nucleotidesCSW01_17615 and CSW01_17620 are separated by 112 nucleotides CSW01_17610: CSW01_17610 - signal transduction histidine-protein kinase/phosphatase UhpB, at 616,608 to 618,191 _17610 CSW01_17615: CSW01_17615 - MFS transporter family glucose-6-phosphate receptor UhpC, at 618,259 to 619,569 _17615 CSW01_17620: CSW01_17620 - iron(III) ABC transporter substrate-binding protein, at 619,682 to 620,716 _17620 Position (kb) 618 619 620Strain fitness (log2 ratio) -2 -1 0 1 2at 617.314 kb on + strand, within CSW01_17610at 617.314 kb on + strand, within CSW01_17610at 617.337 kb on - strand, within CSW01_17610at 617.393 kb on - strand, within CSW01_17610at 617.459 kb on + strand, within CSW01_17610at 617.511 kb on - strand, within CSW01_17610at 617.624 kb on + strand, within CSW01_17610at 617.770 kb on + strand, within CSW01_17610at 617.770 kb on + strand, within CSW01_17610at 617.778 kb on - strand, within CSW01_17610at 617.822 kb on + strand, within CSW01_17610at 617.822 kb on + strand, within CSW01_17610at 617.822 kb on + strand, within CSW01_17610at 617.822 kb on + strand, within CSW01_17610at 617.830 kb on - strand, within CSW01_17610at 617.830 kb on - strand, within CSW01_17610at 617.832 kb on - strand, within CSW01_17610at 617.875 kb on - strand, within CSW01_17610at 617.891 kb on + strand, within CSW01_17610at 617.891 kb on + strand, within CSW01_17610at 617.891 kb on + strand, within CSW01_17610at 617.899 kb on - strand, within CSW01_17610at 617.901 kb on + strand, within CSW01_17610at 618.022 kb on + strand, within CSW01_17610at 618.071 kb on - strandat 618.277 kb on + strandat 618.309 kb on + strandat 618.366 kb on + strandat 618.426 kb on - strand, within CSW01_17615at 618.462 kb on + strand, within CSW01_17615at 618.470 kb on - strand, within CSW01_17615at 618.473 kb on + strand, within CSW01_17615at 618.473 kb on + strand, within CSW01_17615at 618.479 kb on - strand, within CSW01_17615at 618.491 kb on - strand, within CSW01_17615at 618.554 kb on + strand, within CSW01_17615at 618.602 kb on - strand, within CSW01_17615at 618.790 kb on - strand, within CSW01_17615at 618.903 kb on - strand, within CSW01_17615at 618.940 kb on + strand, within CSW01_17615at 618.946 kb on + strand, within CSW01_17615at 618.948 kb on - strand, within CSW01_17615at 618.954 kb on - strand, within CSW01_17615at 618.979 kb on + strand, within CSW01_17615at 618.987 kb on - strand, within CSW01_17615at 618.987 kb on - strand, within CSW01_17615at 619.024 kb on + strand, within CSW01_17615at 619.087 kb on + strand, within CSW01_17615at 619.124 kb on + strand, within CSW01_17615at 619.132 kb on - strand, within CSW01_17615at 619.211 kb on - strand, within CSW01_17615at 619.377 kb on - strand, within CSW01_17615at 619.431 kb on - strand, within CSW01_17615at 619.431 kb on - strand, within CSW01_17615at 619.431 kb on - strand, within CSW01_17615at 619.431 kb on - strand, within CSW01_17615at 619.514 kb on + strandat 619.514 kb on + strandat 619.556 kb on + strandat 619.607 kb on + strandat 619.607 kb on + strandat 619.612 kb on + strandat 619.615 kb on - strandat 619.627 kb on + strandat 619.632 kb on + strandat 619.975 kb on + strand, within CSW01_17620at 620.002 kb on + strand, within CSW01_17620at 620.058 kb on - strand, within CSW01_17620at 620.087 kb on + strand, within CSW01_17620at 620.095 kb on - strand, within CSW01_17620at 620.103 kb on - strand, within CSW01_17620at 620.206 kb on + strand, within CSW01_17620at 620.241 kb on + strand, within CSW01_17620at 620.336 kb on - strand, within CSW01_17620at 620.336 kb on - strand, within CSW01_17620at 620.346 kb on - strand, within CSW01_17620at 620.379 kb on + strand, within CSW01_17620at 620.379 kb on + strand, within CSW01_17620at 620.397 kb on - strand, within CSW01_17620at 620.397 kb on - strand, within CSW01_17620at 620.410 kb on - strand, within CSW01_17620at 620.435 kb on + strand, within CSW01_17620at 620.546 kb on - strand, within CSW01_17620

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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617,314 + CSW01_17610 0.45 +0.7
617,314 + CSW01_17610 0.45 +0.9
617,337 - CSW01_17610 0.46 -0.6
617,393 - CSW01_17610 0.50 -0.0
617,459 + CSW01_17610 0.54 +0.1
617,511 - CSW01_17610 0.57 +0.4
617,624 + CSW01_17610 0.64 +0.5
617,770 + CSW01_17610 0.73 +0.1
617,770 + CSW01_17610 0.73 -0.7
617,778 - CSW01_17610 0.74 +0.1
617,822 + CSW01_17610 0.77 -0.3
617,822 + CSW01_17610 0.77 +0.6
617,822 + CSW01_17610 0.77 -1.0
617,822 + CSW01_17610 0.77 -1.0
617,830 - CSW01_17610 0.77 +0.6
617,830 - CSW01_17610 0.77 +0.0
617,832 - CSW01_17610 0.77 +0.3
617,875 - CSW01_17610 0.80 +0.7
617,891 + CSW01_17610 0.81 +0.7
617,891 + CSW01_17610 0.81 +0.3
617,891 + CSW01_17610 0.81 +0.4
617,899 - CSW01_17610 0.82 -0.1
617,901 + CSW01_17610 0.82 +0.5
618,022 + CSW01_17610 0.89 -0.7
618,071 - +0.2
618,277 + +0.2
618,309 + +0.1
618,366 + +0.3
618,426 - CSW01_17615 0.13 -0.2
618,462 + CSW01_17615 0.15 +0.3
618,470 - CSW01_17615 0.16 +1.1
618,473 + CSW01_17615 0.16 -0.3
618,473 + CSW01_17615 0.16 +0.9
618,479 - CSW01_17615 0.17 -0.5
618,491 - CSW01_17615 0.18 +0.3
618,554 + CSW01_17615 0.23 +0.7
618,602 - CSW01_17615 0.26 +0.3
618,790 - CSW01_17615 0.41 +1.8
618,903 - CSW01_17615 0.49 +0.7
618,940 + CSW01_17615 0.52 +0.5
618,946 + CSW01_17615 0.52 +0.4
618,948 - CSW01_17615 0.53 -1.9
618,954 - CSW01_17615 0.53 -0.6
618,979 + CSW01_17615 0.55 +0.9
618,987 - CSW01_17615 0.56 +0.9
618,987 - CSW01_17615 0.56 +0.6
619,024 + CSW01_17615 0.58 -0.6
619,087 + CSW01_17615 0.63 +0.3
619,124 + CSW01_17615 0.66 +0.3
619,132 - CSW01_17615 0.67 +0.4
619,211 - CSW01_17615 0.73 -0.2
619,377 - CSW01_17615 0.85 -0.2
619,431 - CSW01_17615 0.89 -0.5
619,431 - CSW01_17615 0.89 +0.1
619,431 - CSW01_17615 0.89 +1.3
619,431 - CSW01_17615 0.89 +0.4
619,514 + +0.1
619,514 + +0.4
619,556 + -0.0
619,607 + +0.1
619,607 + +1.5
619,612 + +0.4
619,615 - -0.2
619,627 + +0.7
619,632 + +0.6
619,975 + CSW01_17620 0.28 -0.4
620,002 + CSW01_17620 0.31 +0.2
620,058 - CSW01_17620 0.36 -0.6
620,087 + CSW01_17620 0.39 +0.3
620,095 - CSW01_17620 0.40 +0.6
620,103 - CSW01_17620 0.41 +0.1
620,206 + CSW01_17620 0.51 -0.9
620,241 + CSW01_17620 0.54 +1.5
620,336 - CSW01_17620 0.63 -0.1
620,336 - CSW01_17620 0.63 -0.7
620,346 - CSW01_17620 0.64 +0.1
620,379 + CSW01_17620 0.67 -0.2
620,379 + CSW01_17620 0.67 -0.3
620,397 - CSW01_17620 0.69 +0.5
620,397 - CSW01_17620 0.69 +0.2
620,410 - CSW01_17620 0.70 +0.5
620,435 + CSW01_17620 0.73 +0.3
620,546 - CSW01_17620 0.83 -1.6

Or see this region's nucleotide sequence