Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16800

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16795 and CSW01_16800 are separated by 462 nucleotidesCSW01_16800 and CSW01_16805 are separated by 4 nucleotidesCSW01_16805 and CSW01_16810 are separated by 121 nucleotides CSW01_16795: CSW01_16795 - nucleotide pyrophosphatase, at 435,103 to 438,009 _16795 CSW01_16800: CSW01_16800 - anaerobic ribonucleoside-triphosphate reductase, at 438,472 to 440,592 _16800 CSW01_16805: CSW01_16805 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 440,597 to 441,064 _16805 CSW01_16810: CSW01_16810 - aspartate/tyrosine/aromatic aminotransferase, at 441,186 to 442,367 _16810 Position (kb) 438 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 437.512 kb on + strand, within CSW01_16795at 437.526 kb on - strand, within CSW01_16795at 437.574 kb on + strand, within CSW01_16795at 437.574 kb on + strand, within CSW01_16795at 437.577 kb on - strand, within CSW01_16795at 437.770 kb on - strandat 437.792 kb on - strandat 437.970 kb on + strandat 437.978 kb on - strandat 438.050 kb on + strandat 438.055 kb on + strandat 438.057 kb on + strandat 438.063 kb on - strandat 438.063 kb on - strandat 438.063 kb on - strandat 438.063 kb on - strandat 438.094 kb on + strandat 438.231 kb on - strandat 438.290 kb on - strandat 438.366 kb on - strandat 438.546 kb on - strandat 438.634 kb on + strandat 438.659 kb on + strandat 438.659 kb on + strandat 438.659 kb on + strandat 438.660 kb on - strandat 438.686 kb on - strand, within CSW01_16800at 438.697 kb on + strand, within CSW01_16800at 438.697 kb on + strand, within CSW01_16800at 438.705 kb on - strand, within CSW01_16800at 438.705 kb on - strand, within CSW01_16800at 438.845 kb on + strand, within CSW01_16800at 438.853 kb on - strand, within CSW01_16800at 438.985 kb on + strand, within CSW01_16800at 438.993 kb on - strand, within CSW01_16800at 438.995 kb on - strand, within CSW01_16800at 439.234 kb on + strand, within CSW01_16800at 439.234 kb on + strand, within CSW01_16800at 439.267 kb on - strand, within CSW01_16800at 439.304 kb on - strand, within CSW01_16800at 439.394 kb on + strand, within CSW01_16800at 439.522 kb on - strand, within CSW01_16800at 439.559 kb on - strand, within CSW01_16800at 439.697 kb on + strand, within CSW01_16800at 439.914 kb on + strand, within CSW01_16800at 440.051 kb on + strand, within CSW01_16800at 440.116 kb on - strand, within CSW01_16800at 440.175 kb on + strand, within CSW01_16800at 440.182 kb on + strand, within CSW01_16800at 440.220 kb on - strand, within CSW01_16800at 440.222 kb on + strand, within CSW01_16800at 440.354 kb on - strand, within CSW01_16800at 440.515 kb on + strandat 440.525 kb on + strandat 440.525 kb on + strandat 440.533 kb on - strandat 440.533 kb on - strandat 440.637 kb on - strandat 440.721 kb on + strand, within CSW01_16805at 440.857 kb on - strand, within CSW01_16805at 440.869 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.912 kb on + strand, within CSW01_16805at 440.920 kb on - strand, within CSW01_16805at 440.920 kb on - strand, within CSW01_16805at 441.011 kb on + strand, within CSW01_16805at 441.074 kb on - strandat 441.088 kb on - strandat 441.336 kb on - strand, within CSW01_16810at 441.394 kb on + strand, within CSW01_16810at 441.421 kb on - strand, within CSW01_16810at 441.444 kb on - strand, within CSW01_16810at 441.445 kb on + strand, within CSW01_16810at 441.580 kb on - strand, within CSW01_16810at 441.580 kb on - strand, within CSW01_16810

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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437,512 + CSW01_16795 0.83 -0.8
437,526 - CSW01_16795 0.83 +0.1
437,574 + CSW01_16795 0.85 +0.1
437,574 + CSW01_16795 0.85 -0.8
437,577 - CSW01_16795 0.85 +0.4
437,770 - -0.3
437,792 - +0.1
437,970 + -0.0
437,978 - +0.2
438,050 + +1.1
438,055 + +0.7
438,057 + -0.1
438,063 - -0.3
438,063 - -0.8
438,063 - +1.7
438,063 - -0.3
438,094 + -0.1
438,231 - +0.7
438,290 - +1.0
438,366 - +0.3
438,546 - -0.1
438,634 + +0.3
438,659 + -1.0
438,659 + -0.3
438,659 + -0.5
438,660 - +0.1
438,686 - CSW01_16800 0.10 -0.7
438,697 + CSW01_16800 0.11 -0.7
438,697 + CSW01_16800 0.11 +0.3
438,705 - CSW01_16800 0.11 -0.6
438,705 - CSW01_16800 0.11 -0.0
438,845 + CSW01_16800 0.18 -0.2
438,853 - CSW01_16800 0.18 -2.1
438,985 + CSW01_16800 0.24 -0.3
438,993 - CSW01_16800 0.25 -0.5
438,995 - CSW01_16800 0.25 +0.2
439,234 + CSW01_16800 0.36 -0.1
439,234 + CSW01_16800 0.36 -0.7
439,267 - CSW01_16800 0.37 -1.0
439,304 - CSW01_16800 0.39 -1.5
439,394 + CSW01_16800 0.43 +1.6
439,522 - CSW01_16800 0.50 -0.6
439,559 - CSW01_16800 0.51 +0.1
439,697 + CSW01_16800 0.58 -1.4
439,914 + CSW01_16800 0.68 -0.3
440,051 + CSW01_16800 0.74 -0.6
440,116 - CSW01_16800 0.78 -3.0
440,175 + CSW01_16800 0.80 +0.3
440,182 + CSW01_16800 0.81 -2.3
440,220 - CSW01_16800 0.82 +0.5
440,222 + CSW01_16800 0.83 -2.6
440,354 - CSW01_16800 0.89 +0.7
440,515 + +0.6
440,525 + -1.0
440,525 + -0.9
440,533 - -0.4
440,533 - -0.1
440,637 - -0.9
440,721 + CSW01_16805 0.26 +0.5
440,857 - CSW01_16805 0.56 +0.6
440,869 + CSW01_16805 0.58 -0.0
440,912 + CSW01_16805 0.67 -1.8
440,912 + CSW01_16805 0.67 -0.4
440,912 + CSW01_16805 0.67 -0.7
440,912 + CSW01_16805 0.67 -0.2
440,912 + CSW01_16805 0.67 +0.5
440,920 - CSW01_16805 0.69 +0.2
440,920 - CSW01_16805 0.69 -0.7
441,011 + CSW01_16805 0.88 -0.3
441,074 - +0.2
441,088 - -0.6
441,336 - CSW01_16810 0.13 -1.0
441,394 + CSW01_16810 0.18 -0.2
441,421 - CSW01_16810 0.20 +0.6
441,444 - CSW01_16810 0.22 +0.4
441,445 + CSW01_16810 0.22 +1.9
441,580 - CSW01_16810 0.33 +0.1
441,580 - CSW01_16810 0.33 +0.0

Or see this region's nucleotide sequence