Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16475 and CSW01_16480 are separated by 146 nucleotides CSW01_16480 and CSW01_16485 are separated by 146 nucleotides CSW01_16485 and CSW01_16490 are separated by 142 nucleotides
CSW01_16475: CSW01_16475 - hypothetical protein, at 405,959 to 406,573
_16475
CSW01_16480: CSW01_16480 - DUF2806 domain-containing protein, at 406,720 to 407,577
_16480
CSW01_16485: CSW01_16485 - hypothetical protein, at 407,724 to 408,284
_16485
CSW01_16490: CSW01_16490 - hypothetical protein, at 408,427 to 408,774
_16490
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on - strand at 405.883 kb on - strand at 405.883 kb on - strand at 405.883 kb on - strand at 405.890 kb on - strand at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.135 kb on - strand, within CSW01_16475 at 406.135 kb on - strand, within CSW01_16475 at 406.173 kb on + strand, within CSW01_16475 at 406.181 kb on - strand, within CSW01_16475 at 406.181 kb on - strand, within CSW01_16475 at 406.209 kb on + strand, within CSW01_16475 at 406.209 kb on + strand, within CSW01_16475 at 406.217 kb on - strand, within CSW01_16475 at 406.221 kb on + strand, within CSW01_16475 at 406.229 kb on + strand, within CSW01_16475 at 406.229 kb on - strand, within CSW01_16475 at 406.264 kb on + strand, within CSW01_16475 at 406.274 kb on + strand, within CSW01_16475 at 406.275 kb on + strand, within CSW01_16475 at 406.282 kb on - strand, within CSW01_16475 at 406.307 kb on + strand, within CSW01_16475 at 406.308 kb on + strand, within CSW01_16475 at 406.318 kb on + strand, within CSW01_16475 at 406.365 kb on + strand, within CSW01_16475 at 406.582 kb on - strand at 406.582 kb on - strand at 406.594 kb on - strand at 406.594 kb on - strand at 406.626 kb on + strand at 406.634 kb on - strand at 406.634 kb on - strand at 406.634 kb on - strand at 406.639 kb on - strand at 406.641 kb on - strand at 406.661 kb on + strand at 406.661 kb on + strand at 406.667 kb on - strand at 406.669 kb on - strand at 406.669 kb on - strand at 406.669 kb on - strand at 406.676 kb on + strand at 406.677 kb on - strand at 406.684 kb on + strand at 406.684 kb on + strand at 406.694 kb on + strand at 406.788 kb on + strand at 406.818 kb on + strand, within CSW01_16480 at 406.818 kb on + strand, within CSW01_16480 at 406.859 kb on - strand, within CSW01_16480 at 406.859 kb on - strand, within CSW01_16480 at 406.891 kb on - strand, within CSW01_16480 at 406.908 kb on - strand, within CSW01_16480 at 407.024 kb on - strand, within CSW01_16480 at 407.025 kb on + strand, within CSW01_16480 at 407.025 kb on + strand, within CSW01_16480 at 407.025 kb on + strand, within CSW01_16480 at 407.033 kb on - strand, within CSW01_16480 at 407.033 kb on - strand, within CSW01_16480 at 407.035 kb on + strand, within CSW01_16480 at 407.084 kb on + strand, within CSW01_16480 at 407.159 kb on + strand, within CSW01_16480 at 407.161 kb on + strand, within CSW01_16480 at 407.177 kb on + strand, within CSW01_16480 at 407.217 kb on + strand, within CSW01_16480 at 407.217 kb on + strand, within CSW01_16480 at 407.217 kb on + strand, within CSW01_16480 at 407.233 kb on - strand, within CSW01_16480 at 407.314 kb on + strand, within CSW01_16480 at 407.314 kb on + strand, within CSW01_16480 at 407.374 kb on + strand, within CSW01_16480 at 407.492 kb on + strand at 407.549 kb on + strand at 407.556 kb on - strand at 407.557 kb on - strand at 407.557 kb on - strand at 407.592 kb on - strand at 407.606 kb on - strand at 407.636 kb on + strand at 407.644 kb on - strand at 407.649 kb on + strand at 407.649 kb on + strand at 407.649 kb on + strand at 407.649 kb on + strand at 407.649 kb on + strand at 407.657 kb on - strand at 407.679 kb on + strand at 407.679 kb on + strand at 407.689 kb on + strand at 407.689 kb on + strand at 407.697 kb on - strand at 407.702 kb on - strand at 407.702 kb on - strand at 407.702 kb on - strand at 407.712 kb on + strand at 407.720 kb on - strand at 407.757 kb on - strand at 407.767 kb on - strand at 407.769 kb on + strand at 407.769 kb on + strand at 407.769 kb on + strand at 407.769 kb on + strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.777 kb on - strand at 407.812 kb on + strand, within CSW01_16485 at 407.817 kb on + strand, within CSW01_16485 at 407.822 kb on + strand, within CSW01_16485 at 407.822 kb on + strand, within CSW01_16485 at 407.825 kb on - strand, within CSW01_16485 at 407.825 kb on - strand, within CSW01_16485 at 407.827 kb on + strand, within CSW01_16485 at 407.827 kb on + strand, within CSW01_16485 at 407.830 kb on - strand, within CSW01_16485 at 407.830 kb on - strand, within CSW01_16485 at 407.830 kb on - strand, within CSW01_16485 at 407.830 kb on - strand, within CSW01_16485 at 407.834 kb on + strand, within CSW01_16485 at 407.836 kb on + strand, within CSW01_16485 at 407.836 kb on - strand, within CSW01_16485 at 407.837 kb on - strand, within CSW01_16485 at 407.841 kb on + strand, within CSW01_16485 at 407.841 kb on + strand, within CSW01_16485 at 407.844 kb on - strand, within CSW01_16485 at 407.848 kb on + strand, within CSW01_16485 at 407.849 kb on - strand, within CSW01_16485 at 407.856 kb on - strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.867 kb on + strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.875 kb on - strand, within CSW01_16485 at 407.885 kb on - strand, within CSW01_16485 at 407.982 kb on + strand, within CSW01_16485 at 407.982 kb on + strand, within CSW01_16485 at 407.990 kb on - strand, within CSW01_16485 at 407.995 kb on - strand, within CSW01_16485 at 408.015 kb on + strand, within CSW01_16485 at 408.036 kb on - strand, within CSW01_16485 at 408.044 kb on + strand, within CSW01_16485 at 408.096 kb on + strand, within CSW01_16485 at 408.133 kb on + strand, within CSW01_16485 at 408.133 kb on + strand, within CSW01_16485 at 408.255 kb on + strand at 408.255 kb on + strand at 408.263 kb on - strand at 408.263 kb on - strand at 408.274 kb on + strand at 408.396 kb on - strand at 408.396 kb on - strand at 408.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 405,875 + +0.3 405,875 + -1.6 405,875 + -0.6 405,875 + -0.1 405,875 + +0.1 405,875 + +0.3 405,875 - -0.5 405,883 - -0.4 405,883 - +0.2 405,883 - -0.0 405,890 - +0.6 406,127 + CSW01_16475 0.27 +0.3 406,127 + CSW01_16475 0.27 +0.3 406,127 + CSW01_16475 0.27 +1.2 406,127 + CSW01_16475 0.27 +0.2 406,127 + CSW01_16475 0.27 -0.1 406,127 + CSW01_16475 0.27 -0.0 406,127 + CSW01_16475 0.27 -0.1 406,127 + CSW01_16475 0.27 -0.3 406,127 + CSW01_16475 0.27 +0.1 406,127 + CSW01_16475 0.27 -2.5 406,135 - CSW01_16475 0.29 +1.6 406,135 - CSW01_16475 0.29 -0.6 406,173 + CSW01_16475 0.35 +0.5 406,181 - CSW01_16475 0.36 +0.1 406,181 - CSW01_16475 0.36 +0.0 406,209 + CSW01_16475 0.41 -1.0 406,209 + CSW01_16475 0.41 -0.1 406,217 - CSW01_16475 0.42 +0.1 406,221 + CSW01_16475 0.43 +0.1 406,229 + CSW01_16475 0.44 +0.3 406,229 - CSW01_16475 0.44 +1.5 406,264 + CSW01_16475 0.50 -0.2 406,274 + CSW01_16475 0.51 +0.6 406,275 + CSW01_16475 0.51 -0.0 406,282 - CSW01_16475 0.53 -0.4 406,307 + CSW01_16475 0.57 -0.5 406,308 + CSW01_16475 0.57 -0.1 406,318 + CSW01_16475 0.58 +0.2 406,365 + CSW01_16475 0.66 +0.7 406,582 - +0.5 406,582 - -0.1 406,594 - -0.4 406,594 - +0.3 406,626 + +0.9 406,634 - -0.1 406,634 - -0.3 406,634 - -0.4 406,639 - +0.3 406,641 - +0.2 406,661 + -0.3 406,661 + +1.1 406,667 - -1.2 406,669 - +2.5 406,669 - -0.9 406,669 - -0.4 406,676 + -0.7 406,677 - -0.1 406,684 + +0.7 406,684 + -0.0 406,694 + -0.9 406,788 + +0.1 406,818 + CSW01_16480 0.11 -0.8 406,818 + CSW01_16480 0.11 -0.2 406,859 - CSW01_16480 0.16 -0.4 406,859 - CSW01_16480 0.16 +2.5 406,891 - CSW01_16480 0.20 +0.8 406,908 - CSW01_16480 0.22 -0.3 407,024 - CSW01_16480 0.35 +0.3 407,025 + CSW01_16480 0.36 +0.3 407,025 + CSW01_16480 0.36 -0.3 407,025 + CSW01_16480 0.36 -0.3 407,033 - CSW01_16480 0.36 +0.7 407,033 - CSW01_16480 0.36 -1.1 407,035 + CSW01_16480 0.37 -0.4 407,084 + CSW01_16480 0.42 -0.4 407,159 + CSW01_16480 0.51 -0.0 407,161 + CSW01_16480 0.51 -0.1 407,177 + CSW01_16480 0.53 +0.1 407,217 + CSW01_16480 0.58 +0.3 407,217 + CSW01_16480 0.58 +0.2 407,217 + CSW01_16480 0.58 -0.5 407,233 - CSW01_16480 0.60 -1.2 407,314 + CSW01_16480 0.69 +0.2 407,314 + CSW01_16480 0.69 -0.4 407,374 + CSW01_16480 0.76 -0.1 407,492 + -0.2 407,549 + +0.1 407,556 - +0.5 407,557 - +0.7 407,557 - +0.6 407,592 - +0.4 407,606 - +1.5 407,636 + +1.0 407,644 - -0.7 407,649 + -0.0 407,649 + +0.7 407,649 + +0.1 407,649 + +0.1 407,649 + +0.1 407,657 - -0.4 407,679 + -1.2 407,679 + +1.3 407,689 + -0.2 407,689 + +0.4 407,697 - +0.2 407,702 - -0.2 407,702 - +0.4 407,702 - +0.5 407,712 + +0.1 407,720 - -0.2 407,757 - +0.7 407,767 - +0.7 407,769 + +0.4 407,769 + +0.1 407,769 + +0.6 407,769 + +0.7 407,777 - -0.2 407,777 - +0.1 407,777 - -0.8 407,777 - -0.9 407,777 - -0.1 407,777 - +0.7 407,777 - +0.7 407,777 - -1.1 407,812 + CSW01_16485 0.16 -1.0 407,817 + CSW01_16485 0.17 -0.6 407,822 + CSW01_16485 0.17 +2.0 407,822 + CSW01_16485 0.17 +0.4 407,825 - CSW01_16485 0.18 +0.0 407,825 - CSW01_16485 0.18 -0.1 407,827 + CSW01_16485 0.18 +0.3 407,827 + CSW01_16485 0.18 +0.2 407,830 - CSW01_16485 0.19 +0.5 407,830 - CSW01_16485 0.19 +1.5 407,830 - CSW01_16485 0.19 -1.2 407,830 - CSW01_16485 0.19 -0.2 407,834 + CSW01_16485 0.20 -1.3 407,836 + CSW01_16485 0.20 -0.1 407,836 - CSW01_16485 0.20 -0.4 407,837 - CSW01_16485 0.20 -0.3 407,841 + CSW01_16485 0.21 -0.4 407,841 + CSW01_16485 0.21 -0.2 407,844 - CSW01_16485 0.21 -0.5 407,848 + CSW01_16485 0.22 -0.2 407,849 - CSW01_16485 0.22 +0.0 407,856 - CSW01_16485 0.24 -1.1 407,867 + CSW01_16485 0.25 -0.4 407,867 + CSW01_16485 0.25 +0.3 407,867 + CSW01_16485 0.25 +0.4 407,867 + CSW01_16485 0.25 +0.5 407,867 + CSW01_16485 0.25 -0.0 407,867 + CSW01_16485 0.25 +0.0 407,875 - CSW01_16485 0.27 +1.1 407,875 - CSW01_16485 0.27 +0.1 407,875 - CSW01_16485 0.27 -0.2 407,875 - CSW01_16485 0.27 -0.2 407,875 - CSW01_16485 0.27 +0.1 407,875 - CSW01_16485 0.27 +0.2 407,875 - CSW01_16485 0.27 +0.2 407,875 - CSW01_16485 0.27 -0.6 407,885 - CSW01_16485 0.29 -0.8 407,982 + CSW01_16485 0.46 +1.0 407,982 + CSW01_16485 0.46 -0.2 407,990 - CSW01_16485 0.47 +0.1 407,995 - CSW01_16485 0.48 -0.2 408,015 + CSW01_16485 0.52 -0.4 408,036 - CSW01_16485 0.56 +0.7 408,044 + CSW01_16485 0.57 -0.3 408,096 + CSW01_16485 0.66 -0.1 408,133 + CSW01_16485 0.73 -0.1 408,133 + CSW01_16485 0.73 +0.1 408,255 + +0.2 408,255 + +0.1 408,263 - +0.3 408,263 - +0.3 408,274 + +0.1 408,396 - +0.1 408,396 - -0.3 408,396 - +0.6
Or see this region's nucleotide sequence