Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15300

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15295 and CSW01_15300 are separated by 164 nucleotidesCSW01_15300 and CSW01_15305 are separated by 177 nucleotidesCSW01_15305 and CSW01_15310 are separated by 94 nucleotides CSW01_15295: CSW01_15295 - aspartate aminotransferase family protein, at 286,538 to 288,211 _15295 CSW01_15300: CSW01_15300 - D-alanyl-D-alanine carboxypeptidase, at 288,376 to 289,545 _15300 CSW01_15305: CSW01_15305 - XRE family transcriptional regulator, at 289,723 to 290,070 _15305 CSW01_15310: CSW01_15310 - exoribonuclease R, at 290,165 to 290,599 _15310 Position (kb) 288 289 290Strain fitness (log2 ratio) -2 -1 0 1 2 3at 287.425 kb on - strand, within CSW01_15295at 287.661 kb on - strand, within CSW01_15295at 287.661 kb on - strand, within CSW01_15295at 287.742 kb on + strand, within CSW01_15295at 287.764 kb on + strand, within CSW01_15295at 288.027 kb on - strand, within CSW01_15295at 288.064 kb on - strandat 288.064 kb on - strandat 288.087 kb on + strandat 288.095 kb on - strandat 288.095 kb on - strandat 288.107 kb on + strandat 288.110 kb on - strandat 288.115 kb on - strandat 288.154 kb on + strandat 288.217 kb on + strandat 288.217 kb on + strandat 288.235 kb on - strandat 288.240 kb on - strandat 288.244 kb on + strandat 288.263 kb on + strandat 288.263 kb on + strandat 288.271 kb on - strandat 288.294 kb on - strandat 288.294 kb on - strandat 288.309 kb on + strandat 288.343 kb on - strandat 288.517 kb on + strand, within CSW01_15300at 288.523 kb on + strand, within CSW01_15300at 288.648 kb on - strand, within CSW01_15300at 288.867 kb on + strand, within CSW01_15300at 288.868 kb on + strand, within CSW01_15300at 288.898 kb on + strand, within CSW01_15300at 288.898 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.906 kb on - strand, within CSW01_15300at 288.906 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.925 kb on + strand, within CSW01_15300at 288.989 kb on - strand, within CSW01_15300at 289.024 kb on - strand, within CSW01_15300at 289.032 kb on - strand, within CSW01_15300at 289.069 kb on + strand, within CSW01_15300at 289.074 kb on + strand, within CSW01_15300at 289.077 kb on - strand, within CSW01_15300at 289.082 kb on - strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.088 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.133 kb on + strand, within CSW01_15300at 289.166 kb on + strand, within CSW01_15300at 289.194 kb on + strand, within CSW01_15300at 289.196 kb on + strand, within CSW01_15300at 289.291 kb on + strand, within CSW01_15300at 289.299 kb on - strand, within CSW01_15300at 289.299 kb on - strand, within CSW01_15300at 289.299 kb on - strand, within CSW01_15300at 289.301 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.324 kb on - strand, within CSW01_15300at 289.324 kb on - strand, within CSW01_15300at 289.324 kb on - strand, within CSW01_15300at 289.401 kb on - strand, within CSW01_15300at 289.493 kb on + strandat 289.509 kb on - strandat 289.514 kb on + strandat 289.514 kb on + strandat 289.514 kb on + strandat 289.515 kb on + strandat 289.522 kb on - strandat 289.532 kb on - strandat 289.627 kb on + strandat 289.633 kb on - strandat 289.633 kb on - strandat 289.656 kb on - strandat 289.684 kb on + strandat 289.743 kb on + strandat 289.743 kb on + strandat 289.745 kb on + strandat 289.751 kb on - strandat 289.872 kb on + strand, within CSW01_15305at 289.892 kb on + strand, within CSW01_15305at 289.913 kb on - strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.968 kb on - strand, within CSW01_15305at 289.968 kb on - strand, within CSW01_15305at 290.086 kb on - strandat 290.342 kb on - strand, within CSW01_15310at 290.342 kb on - strand, within CSW01_15310

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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287,425 - CSW01_15295 0.53 +0.1
287,661 - CSW01_15295 0.67 +0.8
287,661 - CSW01_15295 0.67 -0.5
287,742 + CSW01_15295 0.72 +0.8
287,764 + CSW01_15295 0.73 -0.1
288,027 - CSW01_15295 0.89 -0.4
288,064 - -0.8
288,064 - -0.1
288,087 + +0.4
288,095 - +1.3
288,095 - +1.2
288,107 + +0.2
288,110 - -0.2
288,115 - +0.9
288,154 + +0.2
288,217 + +0.2
288,217 + +0.2
288,235 - -0.3
288,240 - +0.5
288,244 + -0.5
288,263 + +1.3
288,263 + -0.9
288,271 - -0.2
288,294 - +0.3
288,294 - -0.6
288,309 + +0.2
288,343 - +0.3
288,517 + CSW01_15300 0.12 -1.4
288,523 + CSW01_15300 0.13 +0.9
288,648 - CSW01_15300 0.23 +1.4
288,867 + CSW01_15300 0.42 -0.3
288,868 + CSW01_15300 0.42 -0.1
288,898 + CSW01_15300 0.45 -0.6
288,898 + CSW01_15300 0.45 +0.4
288,900 + CSW01_15300 0.45 -1.9
288,900 + CSW01_15300 0.45 +0.5
288,900 + CSW01_15300 0.45 +2.4
288,900 + CSW01_15300 0.45 -0.1
288,900 + CSW01_15300 0.45 -0.9
288,900 + CSW01_15300 0.45 -0.7
288,900 + CSW01_15300 0.45 +0.4
288,900 + CSW01_15300 0.45 -0.3
288,906 - CSW01_15300 0.45 -0.0
288,906 - CSW01_15300 0.45 +1.8
288,908 - CSW01_15300 0.45 +0.3
288,908 - CSW01_15300 0.45 -0.1
288,908 - CSW01_15300 0.45 -0.8
288,908 - CSW01_15300 0.45 +0.6
288,908 - CSW01_15300 0.45 +0.6
288,908 - CSW01_15300 0.45 +0.0
288,908 - CSW01_15300 0.45 +0.4
288,908 - CSW01_15300 0.45 +0.3
288,908 - CSW01_15300 0.45 +1.2
288,910 + CSW01_15300 0.46 +0.5
288,910 + CSW01_15300 0.46 +1.6
288,910 + CSW01_15300 0.46 +0.2
288,910 + CSW01_15300 0.46 +1.6
288,910 + CSW01_15300 0.46 +1.0
288,910 + CSW01_15300 0.46 -0.6
288,910 + CSW01_15300 0.46 +0.4
288,910 + CSW01_15300 0.46 +0.8
288,910 + CSW01_15300 0.46 +1.2
288,910 + CSW01_15300 0.46 -0.5
288,910 + CSW01_15300 0.46 +0.3
288,910 + CSW01_15300 0.46 +0.5
288,910 + CSW01_15300 0.46 +0.7
288,910 + CSW01_15300 0.46 +0.2
288,910 + CSW01_15300 0.46 +0.2
288,910 + CSW01_15300 0.46 +0.3
288,910 + CSW01_15300 0.46 +1.0
288,910 + CSW01_15300 0.46 +0.6
288,918 - CSW01_15300 0.46 +2.2
288,918 - CSW01_15300 0.46 +0.7
288,918 - CSW01_15300 0.46 +0.6
288,918 - CSW01_15300 0.46 -0.2
288,918 - CSW01_15300 0.46 -0.3
288,918 - CSW01_15300 0.46 +0.3
288,918 - CSW01_15300 0.46 +0.6
288,918 - CSW01_15300 0.46 +0.3
288,918 - CSW01_15300 0.46 -0.3
288,918 - CSW01_15300 0.46 +0.6
288,918 - CSW01_15300 0.46 -0.0
288,918 - CSW01_15300 0.46 -0.3
288,918 - CSW01_15300 0.46 +0.4
288,918 - CSW01_15300 0.46 +1.8
288,925 + CSW01_15300 0.47 +0.4
288,989 - CSW01_15300 0.52 +0.3
289,024 - CSW01_15300 0.55 -0.1
289,032 - CSW01_15300 0.56 -0.4
289,069 + CSW01_15300 0.59 +1.2
289,074 + CSW01_15300 0.60 +0.4
289,077 - CSW01_15300 0.60 -1.4
289,082 - CSW01_15300 0.60 +0.1
289,087 + CSW01_15300 0.61 +2.2
289,087 + CSW01_15300 0.61 +1.8
289,087 + CSW01_15300 0.61 +1.0
289,088 + CSW01_15300 0.61 -0.9
289,093 + CSW01_15300 0.61 +0.3
289,093 + CSW01_15300 0.61 -1.4
289,093 + CSW01_15300 0.61 +0.0
289,133 + CSW01_15300 0.65 -0.9
289,166 + CSW01_15300 0.68 +0.6
289,194 + CSW01_15300 0.70 -0.6
289,196 + CSW01_15300 0.70 -0.1
289,291 + CSW01_15300 0.78 +2.8
289,299 - CSW01_15300 0.79 -0.1
289,299 - CSW01_15300 0.79 +1.4
289,299 - CSW01_15300 0.79 +0.9
289,301 + CSW01_15300 0.79 +0.5
289,316 + CSW01_15300 0.80 +0.4
289,316 + CSW01_15300 0.80 +1.0
289,316 + CSW01_15300 0.80 +1.0
289,316 + CSW01_15300 0.80 +0.1
289,324 - CSW01_15300 0.81 +0.6
289,324 - CSW01_15300 0.81 -0.1
289,324 - CSW01_15300 0.81 +1.3
289,401 - CSW01_15300 0.88 -0.4
289,493 + +0.9
289,509 - +0.2
289,514 + +0.6
289,514 + +0.2
289,514 + -0.1
289,515 + +1.5
289,522 - +0.2
289,532 - -0.2
289,627 + +0.7
289,633 - +0.0
289,633 - +1.0
289,656 - +0.4
289,684 + +0.1
289,743 + -0.2
289,743 + -0.3
289,745 + +1.0
289,751 - -0.0
289,872 + CSW01_15305 0.43 +0.2
289,892 + CSW01_15305 0.49 +0.1
289,913 - CSW01_15305 0.55 -0.4
289,960 + CSW01_15305 0.68 +0.2
289,960 + CSW01_15305 0.68 +0.0
289,960 + CSW01_15305 0.68 -0.5
289,960 + CSW01_15305 0.68 -0.6
289,968 - CSW01_15305 0.70 +0.5
289,968 - CSW01_15305 0.70 -0.2
290,086 - -0.6
290,342 - CSW01_15310 0.41 -0.0
290,342 - CSW01_15310 0.41 -0.1

Or see this region's nucleotide sequence