Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15105 and CSW01_15110 are separated by 315 nucleotides CSW01_15110 and CSW01_15115 are separated by 52 nucleotides CSW01_15115 and CSW01_15120 overlap by 11 nucleotides
CSW01_15105: CSW01_15105 - class II glutamine amidotransferase, at 247,681 to 248,445
_15105
CSW01_15110: CSW01_15110 - iron(III) ABC transporter substrate-binding protein, at 248,761 to 249,762
_15110
CSW01_15115: CSW01_15115 - iron(III) ABC transporter permease, at 249,815 to 250,753
_15115
CSW01_15120: CSW01_15120 - iron(III) ABC transporter permease, at 250,743 to 251,693
_15120
Position (kb) 248
249
250 Strain fitness (log2 ratio) -2
-1
0
1 at 247.772 kb on + strand, within CSW01_15105 at 247.772 kb on + strand, within CSW01_15105 at 247.780 kb on - strand, within CSW01_15105 at 247.780 kb on - strand, within CSW01_15105 at 247.790 kb on - strand, within CSW01_15105 at 247.833 kb on - strand, within CSW01_15105 at 247.875 kb on - strand, within CSW01_15105 at 247.936 kb on - strand, within CSW01_15105 at 247.974 kb on - strand, within CSW01_15105 at 248.010 kb on - strand, within CSW01_15105 at 248.045 kb on - strand, within CSW01_15105 at 248.208 kb on - strand, within CSW01_15105 at 248.224 kb on + strand, within CSW01_15105 at 248.276 kb on - strand, within CSW01_15105 at 248.296 kb on - strand, within CSW01_15105 at 248.420 kb on - strand at 248.420 kb on - strand at 248.426 kb on - strand at 248.449 kb on + strand at 248.460 kb on + strand at 248.460 kb on + strand at 248.751 kb on - strand at 248.751 kb on - strand at 248.753 kb on - strand at 248.793 kb on - strand at 248.793 kb on - strand at 248.793 kb on - strand at 248.929 kb on - strand, within CSW01_15110 at 248.929 kb on - strand, within CSW01_15110 at 248.938 kb on + strand, within CSW01_15110 at 248.970 kb on - strand, within CSW01_15110 at 249.254 kb on + strand, within CSW01_15110 at 249.518 kb on + strand, within CSW01_15110 at 249.531 kb on - strand, within CSW01_15110 at 249.627 kb on + strand, within CSW01_15110 at 249.980 kb on + strand, within CSW01_15115 at 249.980 kb on + strand, within CSW01_15115 at 249.988 kb on - strand, within CSW01_15115 at 250.072 kb on + strand, within CSW01_15115 at 250.082 kb on - strand, within CSW01_15115 at 250.106 kb on + strand, within CSW01_15115 at 250.251 kb on + strand, within CSW01_15115 at 250.251 kb on + strand, within CSW01_15115 at 250.329 kb on - strand, within CSW01_15115 at 250.342 kb on + strand, within CSW01_15115 at 250.342 kb on + strand, within CSW01_15115 at 250.342 kb on + strand, within CSW01_15115 at 250.342 kb on + strand, within CSW01_15115 at 250.486 kb on - strand, within CSW01_15115 at 250.509 kb on - strand, within CSW01_15115 at 250.743 kb on + strand at 250.743 kb on + strand at 250.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 247,772 + CSW01_15105 0.12 -2.1 247,772 + CSW01_15105 0.12 -1.2 247,780 - CSW01_15105 0.13 +0.3 247,780 - CSW01_15105 0.13 +0.6 247,790 - CSW01_15105 0.14 +0.7 247,833 - CSW01_15105 0.20 +0.6 247,875 - CSW01_15105 0.25 -0.2 247,936 - CSW01_15105 0.33 +0.1 247,974 - CSW01_15105 0.38 -1.2 248,010 - CSW01_15105 0.43 -1.4 248,045 - CSW01_15105 0.48 -0.2 248,208 - CSW01_15105 0.69 -0.2 248,224 + CSW01_15105 0.71 +0.5 248,276 - CSW01_15105 0.78 -0.0 248,296 - CSW01_15105 0.80 +0.5 248,420 - -0.1 248,420 - -0.2 248,426 - -1.1 248,449 + +0.3 248,460 + +0.6 248,460 + -0.2 248,751 - -0.3 248,751 - +0.9 248,753 - +0.1 248,793 - -0.2 248,793 - +1.1 248,793 - +0.2 248,929 - CSW01_15110 0.17 -0.0 248,929 - CSW01_15110 0.17 -0.1 248,938 + CSW01_15110 0.18 +0.2 248,970 - CSW01_15110 0.21 -1.0 249,254 + CSW01_15110 0.49 -0.1 249,518 + CSW01_15110 0.76 -0.3 249,531 - CSW01_15110 0.77 +0.2 249,627 + CSW01_15110 0.86 +1.1 249,980 + CSW01_15115 0.18 -0.7 249,980 + CSW01_15115 0.18 +0.0 249,988 - CSW01_15115 0.18 +0.2 250,072 + CSW01_15115 0.27 +0.4 250,082 - CSW01_15115 0.28 -0.1 250,106 + CSW01_15115 0.31 -0.7 250,251 + CSW01_15115 0.46 -0.7 250,251 + CSW01_15115 0.46 -0.5 250,329 - CSW01_15115 0.55 +1.1 250,342 + CSW01_15115 0.56 +0.4 250,342 + CSW01_15115 0.56 -1.4 250,342 + CSW01_15115 0.56 -0.9 250,342 + CSW01_15115 0.56 +0.8 250,486 - CSW01_15115 0.71 +0.2 250,509 - CSW01_15115 0.74 -0.2 250,743 + +0.1 250,743 + +0.2 250,751 - +0.3
Or see this region's nucleotide sequence