Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15035

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15020 and CSW01_15025 are separated by 102 nucleotidesCSW01_15025 and CSW01_15030 overlap by 50 nucleotidesCSW01_15030 and CSW01_15035 are separated by 106 nucleotidesCSW01_15035 and CSW01_15040 are separated by 57 nucleotides CSW01_15020: CSW01_15020 - NAD(+) synthetase, at 223,886 to 224,716 _15020 CSW01_15025: CSW01_15025 - nicotinate-nicotinamide nucleotide adenylyltransferase, at 224,819 to 225,346 _15025 CSW01_15030: CSW01_15030 - hypothetical protein, at 225,297 to 225,479 _15030 CSW01_15035: CSW01_15035 - transcriptional regulator, at 225,586 to 227,154 _15035 CSW01_15040: CSW01_15040 - ATP-binding protein, at 227,212 to 229,158 _15040 Position (kb) 225 226 227 228Strain fitness (log2 ratio) -2 -1 0 1 2 3at 224.759 kb on - strandat 224.812 kb on + strandat 225.322 kb on + strandat 225.322 kb on + strandat 225.330 kb on - strandat 225.330 kb on - strandat 225.332 kb on + strandat 225.370 kb on - strand, within CSW01_15030at 225.420 kb on - strand, within CSW01_15030at 225.438 kb on + strand, within CSW01_15030at 225.448 kb on - strand, within CSW01_15030at 225.611 kb on + strandat 225.667 kb on + strandat 225.684 kb on + strandat 225.692 kb on - strandat 225.696 kb on + strandat 225.759 kb on - strand, within CSW01_15035at 225.860 kb on - strand, within CSW01_15035at 225.891 kb on - strand, within CSW01_15035at 225.891 kb on - strand, within CSW01_15035at 225.891 kb on - strand, within CSW01_15035at 225.891 kb on - strand, within CSW01_15035at 225.891 kb on - strand, within CSW01_15035at 225.935 kb on + strand, within CSW01_15035at 225.935 kb on + strand, within CSW01_15035at 225.940 kb on + strand, within CSW01_15035at 225.943 kb on - strand, within CSW01_15035at 225.961 kb on + strand, within CSW01_15035at 225.961 kb on + strand, within CSW01_15035at 225.970 kb on + strand, within CSW01_15035at 225.970 kb on + strand, within CSW01_15035at 225.970 kb on + strand, within CSW01_15035at 225.978 kb on - strand, within CSW01_15035at 225.978 kb on - strand, within CSW01_15035at 225.993 kb on + strand, within CSW01_15035at 226.049 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.058 kb on + strand, within CSW01_15035at 226.061 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.066 kb on - strand, within CSW01_15035at 226.126 kb on + strand, within CSW01_15035at 226.167 kb on + strand, within CSW01_15035at 226.175 kb on - strand, within CSW01_15035at 226.287 kb on + strand, within CSW01_15035at 226.294 kb on + strand, within CSW01_15035at 226.300 kb on - strand, within CSW01_15035at 226.314 kb on - strand, within CSW01_15035at 226.318 kb on + strand, within CSW01_15035at 226.385 kb on + strand, within CSW01_15035at 226.387 kb on + strand, within CSW01_15035at 226.460 kb on + strand, within CSW01_15035at 226.530 kb on - strand, within CSW01_15035at 226.530 kb on - strand, within CSW01_15035at 226.582 kb on + strand, within CSW01_15035at 226.641 kb on - strand, within CSW01_15035at 226.648 kb on + strand, within CSW01_15035at 226.723 kb on + strand, within CSW01_15035at 226.723 kb on + strand, within CSW01_15035at 226.972 kb on - strand, within CSW01_15035at 227.149 kb on + strandat 227.149 kb on + strandat 227.175 kb on - strandat 227.327 kb on - strandat 227.361 kb on - strandat 227.536 kb on + strand, within CSW01_15040at 227.536 kb on + strand, within CSW01_15040at 227.536 kb on + strand, within CSW01_15040at 227.536 kb on + strand, within CSW01_15040at 227.536 kb on + strand, within CSW01_15040at 227.544 kb on - strand, within CSW01_15040at 227.544 kb on - strand, within CSW01_15040at 227.552 kb on + strand, within CSW01_15040at 227.552 kb on + strand, within CSW01_15040at 227.560 kb on - strand, within CSW01_15040at 227.621 kb on - strand, within CSW01_15040at 227.788 kb on + strand, within CSW01_15040at 227.829 kb on - strand, within CSW01_15040at 227.852 kb on - strand, within CSW01_15040at 227.852 kb on - strand, within CSW01_15040at 227.908 kb on + strand, within CSW01_15040at 227.997 kb on - strand, within CSW01_15040at 228.019 kb on - strand, within CSW01_15040at 228.105 kb on + strand, within CSW01_15040at 228.113 kb on - strand, within CSW01_15040at 228.113 kb on - strand, within CSW01_15040

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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224,759 - +0.4
224,812 + -0.7
225,322 + -0.2
225,322 + +0.3
225,330 - -0.3
225,330 - -1.0
225,332 + +0.6
225,370 - CSW01_15030 0.40 -0.6
225,420 - CSW01_15030 0.67 +0.5
225,438 + CSW01_15030 0.77 +0.0
225,448 - CSW01_15030 0.83 -0.3
225,611 + +0.4
225,667 + -0.4
225,684 + -0.6
225,692 - +0.0
225,696 + +0.8
225,759 - CSW01_15035 0.11 -0.0
225,860 - CSW01_15035 0.17 -1.0
225,891 - CSW01_15035 0.19 -0.3
225,891 - CSW01_15035 0.19 -0.2
225,891 - CSW01_15035 0.19 -0.3
225,891 - CSW01_15035 0.19 +0.2
225,891 - CSW01_15035 0.19 +0.0
225,935 + CSW01_15035 0.22 +0.0
225,935 + CSW01_15035 0.22 +1.2
225,940 + CSW01_15035 0.23 +0.1
225,943 - CSW01_15035 0.23 -0.2
225,961 + CSW01_15035 0.24 +2.6
225,961 + CSW01_15035 0.24 +1.2
225,970 + CSW01_15035 0.24 -0.1
225,970 + CSW01_15035 0.24 -0.1
225,970 + CSW01_15035 0.24 +0.3
225,978 - CSW01_15035 0.25 +0.5
225,978 - CSW01_15035 0.25 +0.3
225,993 + CSW01_15035 0.26 +0.5
226,049 + CSW01_15035 0.30 -0.5
226,058 + CSW01_15035 0.30 -0.4
226,058 + CSW01_15035 0.30 +0.5
226,058 + CSW01_15035 0.30 +0.2
226,058 + CSW01_15035 0.30 +0.0
226,058 + CSW01_15035 0.30 +0.4
226,058 + CSW01_15035 0.30 -2.7
226,058 + CSW01_15035 0.30 +0.6
226,058 + CSW01_15035 0.30 +0.0
226,058 + CSW01_15035 0.30 +0.5
226,058 + CSW01_15035 0.30 -0.0
226,058 + CSW01_15035 0.30 +1.5
226,058 + CSW01_15035 0.30 +0.7
226,061 - CSW01_15035 0.30 -0.0
226,066 - CSW01_15035 0.31 +0.3
226,066 - CSW01_15035 0.31 +0.2
226,066 - CSW01_15035 0.31 -0.5
226,066 - CSW01_15035 0.31 +0.6
226,066 - CSW01_15035 0.31 -1.3
226,066 - CSW01_15035 0.31 -1.2
226,066 - CSW01_15035 0.31 -0.5
226,066 - CSW01_15035 0.31 +0.2
226,066 - CSW01_15035 0.31 -0.9
226,066 - CSW01_15035 0.31 -0.3
226,066 - CSW01_15035 0.31 -2.3
226,126 + CSW01_15035 0.34 -0.3
226,167 + CSW01_15035 0.37 +1.1
226,175 - CSW01_15035 0.38 -0.3
226,287 + CSW01_15035 0.45 -0.4
226,294 + CSW01_15035 0.45 +0.2
226,300 - CSW01_15035 0.46 -0.2
226,314 - CSW01_15035 0.46 +0.1
226,318 + CSW01_15035 0.47 +0.0
226,385 + CSW01_15035 0.51 -0.1
226,387 + CSW01_15035 0.51 -0.3
226,460 + CSW01_15035 0.56 -0.3
226,530 - CSW01_15035 0.60 -0.6
226,530 - CSW01_15035 0.60 +0.3
226,582 + CSW01_15035 0.63 -0.8
226,641 - CSW01_15035 0.67 +0.2
226,648 + CSW01_15035 0.68 +1.5
226,723 + CSW01_15035 0.72 -0.4
226,723 + CSW01_15035 0.72 -0.4
226,972 - CSW01_15035 0.88 -0.8
227,149 + -0.0
227,149 + +0.8
227,175 - +0.1
227,327 - +0.6
227,361 - -0.3
227,536 + CSW01_15040 0.17 +0.4
227,536 + CSW01_15040 0.17 -0.0
227,536 + CSW01_15040 0.17 -0.1
227,536 + CSW01_15040 0.17 +3.4
227,536 + CSW01_15040 0.17 -1.2
227,544 - CSW01_15040 0.17 -0.0
227,544 - CSW01_15040 0.17 +0.0
227,552 + CSW01_15040 0.17 -1.3
227,552 + CSW01_15040 0.17 +0.6
227,560 - CSW01_15040 0.18 +0.0
227,621 - CSW01_15040 0.21 +0.2
227,788 + CSW01_15040 0.30 -1.6
227,829 - CSW01_15040 0.32 -0.8
227,852 - CSW01_15040 0.33 +0.4
227,852 - CSW01_15040 0.33 +1.5
227,908 + CSW01_15040 0.36 +0.5
227,997 - CSW01_15040 0.40 -0.1
228,019 - CSW01_15040 0.41 -0.2
228,105 + CSW01_15040 0.46 -1.3
228,113 - CSW01_15040 0.46 -1.8
228,113 - CSW01_15040 0.46 +0.3

Or see this region's nucleotide sequence