Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13430

Experiment: LB_Anaerobic_18HR_ZN20B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_18HR_ZN20B
2,859,005	-		CSW01_13425	0.46	-1.7
2,859,099	+		CSW01_13425	0.51	-0.0
2,859,107	-		CSW01_13425	0.52	+1.0
2,859,113	+		CSW01_13425	0.52	-1.0
2,859,113	+		CSW01_13425	0.52	+0.2
2,859,113	+		CSW01_13425	0.52	-0.3
2,859,113	+		CSW01_13425	0.52	-1.1
2,859,113	+		CSW01_13425	0.52	-0.7
2,859,113	+		CSW01_13425	0.52	-0.5
2,859,113	+		CSW01_13425	0.52	-0.2
2,859,113	+		CSW01_13425	0.52	+0.3
2,859,113	+		CSW01_13425	0.52	-0.5
2,859,113	+		CSW01_13425	0.52	+0.9
2,859,113	+		CSW01_13425	0.52	-1.1
2,859,113	+		CSW01_13425	0.52	-1.0
2,859,113	+		CSW01_13425	0.52	+0.0
2,859,113	+		CSW01_13425	0.52	-0.5
2,859,113	+		CSW01_13425	0.52	+0.5
2,859,113	+		CSW01_13425	0.52	-0.3
2,859,113	+		CSW01_13425	0.52	+0.4
2,859,113	+		CSW01_13425	0.52	-1.5
2,859,113	+		CSW01_13425	0.52	-0.5
2,859,113	+		CSW01_13425	0.52	-0.7
2,859,113	+		CSW01_13425	0.52	-0.5
2,859,113	+		CSW01_13425	0.52	-0.0
2,859,113	+		CSW01_13425	0.52	-1.0
2,859,113	+		CSW01_13425	0.52	-0.8
2,859,113	+		CSW01_13425	0.52	-0.2
2,859,113	+		CSW01_13425	0.52	+0.9
2,859,113	+		CSW01_13425	0.52	+0.6
2,859,113	+		CSW01_13425	0.52	-0.3
2,859,113	+		CSW01_13425	0.52	-0.4
2,859,113	+		CSW01_13425	0.52	+0.3
2,859,113	+		CSW01_13425	0.52	-0.1
2,859,114	+		CSW01_13425	0.52	-0.1
2,859,114	+		CSW01_13425	0.52	-0.4
2,859,114	+		CSW01_13425	0.52	-0.0
2,859,121	-		CSW01_13425	0.52	-0.7
2,859,121	-		CSW01_13425	0.52	-0.7
2,859,121	-		CSW01_13425	0.52	-1.5
2,859,121	-		CSW01_13425	0.52	-0.0
2,859,121	-		CSW01_13425	0.52	-0.2
2,859,121	-		CSW01_13425	0.52	-0.0
2,859,121	-		CSW01_13425	0.52	+0.6
2,859,121	-		CSW01_13425	0.52	-0.2
2,859,121	-		CSW01_13425	0.52	-0.4
2,859,121	-		CSW01_13425	0.52	-0.4
2,859,121	-		CSW01_13425	0.52	-0.7
2,859,121	-		CSW01_13425	0.52	-0.7
2,859,121	-		CSW01_13425	0.52	-0.2
2,859,121	-		CSW01_13425	0.52	-0.5
2,859,121	-		CSW01_13425	0.52	-0.1
2,859,121	-		CSW01_13425	0.52	-2.5
2,859,121	-		CSW01_13425	0.52	-0.8
2,859,121	-		CSW01_13425	0.52	-0.4
2,859,121	-		CSW01_13425	0.52	+0.4
2,859,121	-		CSW01_13425	0.52	-2.7
2,859,141	-		CSW01_13425	0.54	+0.1
2,859,160	+		CSW01_13425	0.55	-0.4
2,859,177	+		CSW01_13425	0.56	+1.0
2,859,190	-		CSW01_13425	0.56	-0.1
2,859,227	+		CSW01_13425	0.58	+0.3
2,859,232	+		CSW01_13425	0.59	-0.9
2,859,251	-		CSW01_13425	0.60	+0.3
2,859,325	+		CSW01_13425	0.64	-1.0
2,859,330	+		CSW01_13425	0.64	-1.4
2,859,330	+		CSW01_13425	0.64	-0.6
2,859,338	-		CSW01_13425	0.64	-0.2
2,859,350	-		CSW01_13425	0.65	-0.4
2,859,414	-		CSW01_13425	0.69	-0.4
2,859,421	+		CSW01_13425	0.69	-1.1
2,859,423	+		CSW01_13425	0.69	-1.7
2,859,431	-		CSW01_13425	0.70	-0.7
2,859,467	-		CSW01_13425	0.72	+0.5
2,859,467	-		CSW01_13425	0.72	+0.9
2,859,469	+		CSW01_13425	0.72	-2.5
2,859,516	-		CSW01_13425	0.74	-2.0
2,859,525	+		CSW01_13425	0.75	-1.0
2,859,525	+		CSW01_13425	0.75	-0.7
2,859,541	+		CSW01_13425	0.76	+0.0
2,859,554	-		CSW01_13425	0.76	-1.0
2,859,666	+		CSW01_13425	0.83	+1.5
2,859,666	+		CSW01_13425	0.83	+0.3
2,859,666	+		CSW01_13425	0.83	-0.5
2,859,671	+		CSW01_13425	0.83	-1.0
2,859,672	-		CSW01_13425	0.83	-0.4
2,859,674	-		CSW01_13425	0.83	-1.2
2,859,679	-		CSW01_13425	0.83	-0.3
2,859,681	+		CSW01_13425	0.83	+0.1
2,859,707	+		CSW01_13425	0.85	-1.1
2,859,707	+		CSW01_13425	0.85	-0.3
2,859,707	+		CSW01_13425	0.85	-0.8
2,859,707	+		CSW01_13425	0.85	-0.5
2,859,707	+		CSW01_13425	0.85	-0.4
2,859,714	-		CSW01_13425	0.85	-0.0
2,859,715	-		CSW01_13425	0.85	+0.5
2,859,715	-		CSW01_13425	0.85	+1.0
2,859,729	+		CSW01_13425	0.86	-2.5
2,859,737	+		CSW01_13425	0.86	-0.5
2,859,737	+		CSW01_13425	0.86	-0.4
2,859,737	+		CSW01_13425	0.86	-1.5
2,859,737	+		CSW01_13425	0.86	-0.2
2,859,737	+		CSW01_13425	0.86	-0.3
2,859,742	+		CSW01_13425	0.87	-0.2
2,859,745	-		CSW01_13425	0.87	-0.9
2,859,745	-		CSW01_13425	0.87	-0.7
2,859,745	-		CSW01_13425	0.87	-1.5
2,859,747	+		CSW01_13425	0.87	+0.5
2,859,764	+		CSW01_13425	0.88	-1.0
2,859,764	+		CSW01_13425	0.88	-0.7
2,859,764	+		CSW01_13425	0.88	-0.4
2,859,764	+		CSW01_13425	0.88	-2.2
2,859,769	+		CSW01_13425	0.88	+0.6
2,859,777	-		CSW01_13425	0.89	-0.6
2,859,786	+		CSW01_13425	0.89	-0.9
2,859,786	+		CSW01_13425	0.89	+0.3
2,859,786	+		CSW01_13425	0.89	+2.2
2,859,794	-		CSW01_13425	0.90	-0.7
2,859,794	-		CSW01_13425	0.90	-2.1
2,859,794	-		CSW01_13425	0.90	+0.1
2,859,794	-		CSW01_13425	0.90	+0.4
2,859,794	-		CSW01_13425	0.90	-0.5
2,859,796	-		CSW01_13425	0.90	+0.4
2,859,856	-				-0.7
2,859,907	+				-0.9
2,859,917	-				-0.9
2,859,943	+				-0.2
2,859,962	+				-0.2
2,859,962	+				-0.4
2,860,041	+				-1.1
2,860,187	+		CSW01_13430	0.27	-2.4
2,860,195	-		CSW01_13430	0.28	-0.6
2,860,195	-		CSW01_13430	0.28	+0.9
2,860,229	+		CSW01_13430	0.33	-0.5
2,860,250	+		CSW01_13430	0.35	-0.9
2,860,250	+		CSW01_13430	0.35	-0.1
2,860,293	-		CSW01_13430	0.41	-1.2
2,860,362	+		CSW01_13430	0.50	-0.8
2,860,370	-		CSW01_13430	0.51	-0.7
2,860,372	+		CSW01_13430	0.52	-1.0
2,860,372	+		CSW01_13430	0.52	-3.0
2,860,372	+		CSW01_13430	0.52	-0.6
2,860,377	+		CSW01_13430	0.52	+0.8
2,860,380	-		CSW01_13430	0.53	-0.8
2,860,385	-		CSW01_13430	0.53	-0.4
2,860,387	+		CSW01_13430	0.53	-0.5
2,860,395	-		CSW01_13430	0.55	+1.2
2,860,395	-		CSW01_13430	0.55	-0.5
2,860,413	-		CSW01_13430	0.57	-0.4
2,860,445	-		CSW01_13430	0.61	-1.2
2,860,450	-		CSW01_13430	0.62	+1.0
2,860,467	+		CSW01_13430	0.64	-0.5
2,860,474	+		CSW01_13430	0.65	-0.6
2,860,504	+		CSW01_13430	0.69	-0.4
2,860,526	+		CSW01_13430	0.72	-0.2
2,860,541	+		CSW01_13430	0.74	-0.4
2,860,541	+		CSW01_13430	0.74	-0.5
2,860,549	-		CSW01_13430	0.75	-0.7
2,860,565	+		CSW01_13430	0.77	-1.0
2,860,589	+		CSW01_13430	0.80	-1.6
2,860,589	+		CSW01_13430	0.80	-0.1
2,860,589	+		CSW01_13430	0.80	-0.8
2,860,597	-		CSW01_13430	0.81	-2.7
2,860,597	-		CSW01_13430	0.81	+0.1
2,860,597	-		CSW01_13430	0.81	-1.2
2,860,605	-		CSW01_13430	0.82	+0.4
2,860,612	+		CSW01_13430	0.83	-0.8
2,860,612	+		CSW01_13430	0.83	-1.0
2,860,612	+		CSW01_13430	0.83	-0.1
2,860,612	+		CSW01_13430	0.83	-1.1
2,860,612	+		CSW01_13430	0.83	+0.1
2,860,612	+		CSW01_13430	0.83	-1.1
2,860,612	+		CSW01_13430	0.83	-0.5
2,860,612	+		CSW01_13430	0.83	-0.5
2,860,612	+		CSW01_13430	0.83	+0.4
2,860,612	+		CSW01_13430	0.83	-0.1
2,860,612	+		CSW01_13430	0.83	-0.8
2,860,612	+		CSW01_13430	0.83	-0.5
2,860,612	+		CSW01_13430	0.83	-0.4
2,860,612	+		CSW01_13430	0.83	-1.0
2,860,612	+		CSW01_13430	0.83	-0.5
2,860,612	+		CSW01_13430	0.83	-0.5
2,860,620	-		CSW01_13430	0.84	-0.9
2,860,620	-		CSW01_13430	0.84	+0.8
2,860,620	-		CSW01_13430	0.84	-0.4
2,860,620	-		CSW01_13430	0.84	-0.4
2,860,620	-		CSW01_13430	0.84	-1.2
2,860,620	-		CSW01_13430	0.84	+0.5
2,860,620	-		CSW01_13430	0.84	-0.5
2,860,620	-		CSW01_13430	0.84	-0.0
2,860,620	-		CSW01_13430	0.84	+1.1
2,860,673	+				-0.1
2,860,677	+				-0.2
2,860,700	+				-0.3
2,860,708	-				-0.8
2,860,757	+				-0.6
2,860,758	-				-0.5
2,860,765	-				-0.7
2,860,765	-				-1.0
2,860,765	-				-1.2
2,860,820	-		CSW01_13435	0.20	-0.3
2,860,851	+		CSW01_13435	0.28	-0.8
2,860,859	-		CSW01_13435	0.30	+0.2
2,860,859	-		CSW01_13435	0.30	+0.3
2,860,864	-		CSW01_13435	0.32	-0.2
2,860,869	-		CSW01_13435	0.33	-1.2
2,860,869	-		CSW01_13435	0.33	-1.0
2,860,869	-		CSW01_13435	0.33	-0.6
2,860,874	+		CSW01_13435	0.34	-0.7
2,860,874	+		CSW01_13435	0.34	-0.8
2,860,882	-		CSW01_13435	0.36	-0.0
2,860,896	-		CSW01_13435	0.40	-0.4
2,860,897	+		CSW01_13435	0.40	-1.4
2,860,904	-		CSW01_13435	0.42	+1.8
2,860,904	-		CSW01_13435	0.42	-1.5
2,860,904	-		CSW01_13435	0.42	-0.2
2,860,904	-		CSW01_13435	0.42	-0.5
2,860,970	+		CSW01_13435	0.59	+1.0
2,860,977	-		CSW01_13435	0.61	-0.6
2,860,985	-		CSW01_13435	0.63	-0.3
2,861,075	-		CSW01_13435	0.87	-0.1
2,861,130	-				-1.2
2,861,138	+				-0.2
2,861,192	-		CSW01_13440	0.22	+1.5
2,861,194	-		CSW01_13440	0.22	-0.9
2,861,266	-		CSW01_13440	0.41	-1.0
2,861,266	-		CSW01_13440	0.41	+0.6
2,861,280	+		CSW01_13440	0.44	-0.2
2,861,288	-		CSW01_13440	0.46	+0.1
2,861,298	+		CSW01_13440	0.49	+0.2
2,861,298	+		CSW01_13440	0.49	+0.3
2,861,298	+		CSW01_13440	0.49	-0.5
2,861,306	-		CSW01_13440	0.51	+0.6
2,861,331	-		CSW01_13440	0.57	-0.5
2,861,370	+		CSW01_13440	0.67	+0.6
2,861,378	-		CSW01_13440	0.69	-0.8
2,861,447	-		CSW01_13440	0.87	+0.9
2,861,461	+				+0.1
2,861,464	-				-1.1
2,861,479	+				+0.0
2,861,532	-				+0.1
2,861,612	+				-0.9