Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_11370 and CSW01_11375 are separated by 146 nucleotides CSW01_11375 and CSW01_11380 are separated by 8 nucleotides CSW01_11380 and CSW01_11385 are separated by 56 nucleotides
CSW01_11370: CSW01_11370 - acyl-CoA dehydrogenase, at 2,415,562 to 2,418,006
_11370
CSW01_11375: CSW01_11375 - TIGR03503 family protein, at 2,418,153 to 2,419,412
_11375
CSW01_11380: CSW01_11380 - DNA polymerase III subunit epsilon, at 2,419,421 to 2,420,164
_11380
CSW01_11385: CSW01_11385 - ribonuclease HI, at 2,420,221 to 2,420,691
_11385
Position (kb)
2418
2419
2420 Strain fitness (log2 ratio)
-1
0
1
2 at 2417.212 kb on - strand, within CSW01_11370 at 2417.214 kb on + strand, within CSW01_11370 at 2417.231 kb on + strand, within CSW01_11370 at 2417.231 kb on + strand, within CSW01_11370 at 2417.239 kb on - strand, within CSW01_11370 at 2417.239 kb on - strand, within CSW01_11370 at 2417.239 kb on - strand, within CSW01_11370 at 2417.239 kb on - strand, within CSW01_11370 at 2417.250 kb on - strand, within CSW01_11370 at 2417.284 kb on - strand, within CSW01_11370 at 2417.321 kb on + strand, within CSW01_11370 at 2417.321 kb on + strand, within CSW01_11370 at 2417.329 kb on - strand, within CSW01_11370 at 2417.329 kb on - strand, within CSW01_11370 at 2417.329 kb on - strand, within CSW01_11370 at 2417.329 kb on - strand, within CSW01_11370 at 2417.359 kb on + strand, within CSW01_11370 at 2417.359 kb on + strand, within CSW01_11370 at 2417.378 kb on + strand, within CSW01_11370 at 2417.378 kb on + strand, within CSW01_11370 at 2417.378 kb on + strand, within CSW01_11370 at 2417.386 kb on - strand, within CSW01_11370 at 2417.386 kb on - strand, within CSW01_11370 at 2417.504 kb on - strand, within CSW01_11370 at 2417.510 kb on - strand, within CSW01_11370 at 2417.537 kb on + strand, within CSW01_11370 at 2417.547 kb on + strand, within CSW01_11370 at 2417.555 kb on - strand, within CSW01_11370 at 2417.615 kb on - strand, within CSW01_11370 at 2417.640 kb on + strand, within CSW01_11370 at 2417.711 kb on + strand, within CSW01_11370 at 2417.711 kb on + strand, within CSW01_11370 at 2417.719 kb on - strand, within CSW01_11370 at 2417.812 kb on + strand at 2417.812 kb on + strand at 2417.820 kb on - strand at 2417.906 kb on - strand at 2417.930 kb on - strand at 2417.985 kb on + strand at 2417.985 kb on + strand at 2417.993 kb on - strand at 2417.993 kb on - strand at 2417.993 kb on - strand at 2417.993 kb on - strand at 2418.000 kb on - strand at 2418.007 kb on + strand at 2418.007 kb on + strand at 2418.022 kb on + strand at 2418.022 kb on + strand at 2418.022 kb on + strand at 2418.032 kb on - strand at 2418.130 kb on - strand at 2418.170 kb on - strand at 2418.227 kb on + strand at 2418.227 kb on + strand at 2418.227 kb on + strand at 2418.235 kb on - strand at 2418.252 kb on + strand at 2418.260 kb on - strand at 2418.308 kb on - strand, within CSW01_11375 at 2418.394 kb on + strand, within CSW01_11375 at 2418.394 kb on + strand, within CSW01_11375 at 2418.402 kb on - strand, within CSW01_11375 at 2418.415 kb on + strand, within CSW01_11375 at 2418.415 kb on + strand, within CSW01_11375 at 2418.487 kb on + strand, within CSW01_11375 at 2418.525 kb on + strand, within CSW01_11375 at 2418.564 kb on - strand, within CSW01_11375 at 2418.589 kb on + strand, within CSW01_11375 at 2418.589 kb on - strand, within CSW01_11375 at 2418.614 kb on + strand, within CSW01_11375 at 2418.646 kb on + strand, within CSW01_11375 at 2418.646 kb on + strand, within CSW01_11375 at 2418.654 kb on - strand, within CSW01_11375 at 2418.654 kb on - strand, within CSW01_11375 at 2418.654 kb on - strand, within CSW01_11375 at 2418.654 kb on - strand, within CSW01_11375 at 2418.675 kb on + strand, within CSW01_11375 at 2418.715 kb on + strand, within CSW01_11375 at 2418.728 kb on + strand, within CSW01_11375 at 2418.771 kb on + strand, within CSW01_11375 at 2418.791 kb on - strand, within CSW01_11375 at 2418.791 kb on - strand, within CSW01_11375 at 2418.882 kb on - strand, within CSW01_11375 at 2418.892 kb on - strand, within CSW01_11375 at 2418.892 kb on - strand, within CSW01_11375 at 2418.999 kb on - strand, within CSW01_11375 at 2419.081 kb on - strand, within CSW01_11375 at 2419.224 kb on - strand, within CSW01_11375 at 2419.302 kb on + strand at 2419.307 kb on + strand at 2419.363 kb on - strand at 2419.373 kb on - strand at 2419.454 kb on - strand at 2420.203 kb on + strand at 2420.203 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 2,417,212 - CSW01_11370 0.67 -0.0 2,417,214 + CSW01_11370 0.68 -1.0 2,417,231 + CSW01_11370 0.68 -0.3 2,417,231 + CSW01_11370 0.68 +0.0 2,417,239 - CSW01_11370 0.69 -0.1 2,417,239 - CSW01_11370 0.69 +0.2 2,417,239 - CSW01_11370 0.69 +0.7 2,417,239 - CSW01_11370 0.69 -0.9 2,417,250 - CSW01_11370 0.69 -0.5 2,417,284 - CSW01_11370 0.70 +0.5 2,417,321 + CSW01_11370 0.72 +0.1 2,417,321 + CSW01_11370 0.72 -0.2 2,417,329 - CSW01_11370 0.72 -0.8 2,417,329 - CSW01_11370 0.72 -0.1 2,417,329 - CSW01_11370 0.72 +0.1 2,417,329 - CSW01_11370 0.72 -0.7 2,417,359 + CSW01_11370 0.73 -0.7 2,417,359 + CSW01_11370 0.73 +0.5 2,417,378 + CSW01_11370 0.74 +0.8 2,417,378 + CSW01_11370 0.74 -0.4 2,417,378 + CSW01_11370 0.74 -0.3 2,417,386 - CSW01_11370 0.75 -0.0 2,417,386 - CSW01_11370 0.75 +0.0 2,417,504 - CSW01_11370 0.79 +0.3 2,417,510 - CSW01_11370 0.80 -0.5 2,417,537 + CSW01_11370 0.81 -0.1 2,417,547 + CSW01_11370 0.81 +0.5 2,417,555 - CSW01_11370 0.82 +0.1 2,417,615 - CSW01_11370 0.84 -0.8 2,417,640 + CSW01_11370 0.85 +0.5 2,417,711 + CSW01_11370 0.88 -0.5 2,417,711 + CSW01_11370 0.88 +0.0 2,417,719 - CSW01_11370 0.88 -0.6 2,417,812 + -0.1 2,417,812 + +0.2 2,417,820 - +0.7 2,417,906 - +0.4 2,417,930 - -0.8 2,417,985 + -0.3 2,417,985 + -0.2 2,417,993 - +0.1 2,417,993 - +0.2 2,417,993 - +0.2 2,417,993 - +0.9 2,418,000 - +0.6 2,418,007 + -0.8 2,418,007 + +0.0 2,418,022 + -0.0 2,418,022 + +0.2 2,418,022 + -0.6 2,418,032 - -0.1 2,418,130 - -0.0 2,418,170 - -1.2 2,418,227 + +0.4 2,418,227 + +1.5 2,418,227 + -0.5 2,418,235 - +0.0 2,418,252 + -0.7 2,418,260 - +2.5 2,418,308 - CSW01_11375 0.12 +0.0 2,418,394 + CSW01_11375 0.19 -0.8 2,418,394 + CSW01_11375 0.19 +0.8 2,418,402 - CSW01_11375 0.20 -0.4 2,418,415 + CSW01_11375 0.21 +0.9 2,418,415 + CSW01_11375 0.21 +1.8 2,418,487 + CSW01_11375 0.27 -0.4 2,418,525 + CSW01_11375 0.30 +0.2 2,418,564 - CSW01_11375 0.33 +0.0 2,418,589 + CSW01_11375 0.35 +0.6 2,418,589 - CSW01_11375 0.35 +0.2 2,418,614 + CSW01_11375 0.37 +0.1 2,418,646 + CSW01_11375 0.39 +0.7 2,418,646 + CSW01_11375 0.39 +1.0 2,418,654 - CSW01_11375 0.40 +0.8 2,418,654 - CSW01_11375 0.40 +0.4 2,418,654 - CSW01_11375 0.40 +0.5 2,418,654 - CSW01_11375 0.40 +0.3 2,418,675 + CSW01_11375 0.41 +0.0 2,418,715 + CSW01_11375 0.45 +0.5 2,418,728 + CSW01_11375 0.46 +0.6 2,418,771 + CSW01_11375 0.49 +1.1 2,418,791 - CSW01_11375 0.51 +0.1 2,418,791 - CSW01_11375 0.51 +0.6 2,418,882 - CSW01_11375 0.58 +0.8 2,418,892 - CSW01_11375 0.59 +0.6 2,418,892 - CSW01_11375 0.59 +1.4 2,418,999 - CSW01_11375 0.67 -0.1 2,419,081 - CSW01_11375 0.74 +0.1 2,419,224 - CSW01_11375 0.85 +0.4 2,419,302 + -0.2 2,419,307 + +1.0 2,419,363 - +0.7 2,419,373 - +0.9 2,419,454 - -1.1 2,420,203 + -0.4 2,420,203 + -0.2
Or see this region's nucleotide sequence