Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11375

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11370 and CSW01_11375 are separated by 146 nucleotidesCSW01_11375 and CSW01_11380 are separated by 8 nucleotidesCSW01_11380 and CSW01_11385 are separated by 56 nucleotides CSW01_11370: CSW01_11370 - acyl-CoA dehydrogenase, at 2,415,562 to 2,418,006 _11370 CSW01_11375: CSW01_11375 - TIGR03503 family protein, at 2,418,153 to 2,419,412 _11375 CSW01_11380: CSW01_11380 - DNA polymerase III subunit epsilon, at 2,419,421 to 2,420,164 _11380 CSW01_11385: CSW01_11385 - ribonuclease HI, at 2,420,221 to 2,420,691 _11385 Position (kb) 2418 2419 2420Strain fitness (log2 ratio) -1 0 1 2at 2417.212 kb on - strand, within CSW01_11370at 2417.214 kb on + strand, within CSW01_11370at 2417.231 kb on + strand, within CSW01_11370at 2417.231 kb on + strand, within CSW01_11370at 2417.239 kb on - strand, within CSW01_11370at 2417.239 kb on - strand, within CSW01_11370at 2417.239 kb on - strand, within CSW01_11370at 2417.239 kb on - strand, within CSW01_11370at 2417.250 kb on - strand, within CSW01_11370at 2417.284 kb on - strand, within CSW01_11370at 2417.321 kb on + strand, within CSW01_11370at 2417.321 kb on + strand, within CSW01_11370at 2417.329 kb on - strand, within CSW01_11370at 2417.329 kb on - strand, within CSW01_11370at 2417.329 kb on - strand, within CSW01_11370at 2417.329 kb on - strand, within CSW01_11370at 2417.359 kb on + strand, within CSW01_11370at 2417.359 kb on + strand, within CSW01_11370at 2417.378 kb on + strand, within CSW01_11370at 2417.378 kb on + strand, within CSW01_11370at 2417.378 kb on + strand, within CSW01_11370at 2417.386 kb on - strand, within CSW01_11370at 2417.386 kb on - strand, within CSW01_11370at 2417.504 kb on - strand, within CSW01_11370at 2417.510 kb on - strand, within CSW01_11370at 2417.537 kb on + strand, within CSW01_11370at 2417.547 kb on + strand, within CSW01_11370at 2417.555 kb on - strand, within CSW01_11370at 2417.615 kb on - strand, within CSW01_11370at 2417.640 kb on + strand, within CSW01_11370at 2417.711 kb on + strand, within CSW01_11370at 2417.711 kb on + strand, within CSW01_11370at 2417.719 kb on - strand, within CSW01_11370at 2417.812 kb on + strandat 2417.812 kb on + strandat 2417.820 kb on - strandat 2417.906 kb on - strandat 2417.930 kb on - strandat 2417.985 kb on + strandat 2417.985 kb on + strandat 2417.993 kb on - strandat 2417.993 kb on - strandat 2417.993 kb on - strandat 2417.993 kb on - strandat 2418.000 kb on - strandat 2418.007 kb on + strandat 2418.007 kb on + strandat 2418.022 kb on + strandat 2418.022 kb on + strandat 2418.022 kb on + strandat 2418.032 kb on - strandat 2418.130 kb on - strandat 2418.170 kb on - strandat 2418.227 kb on + strandat 2418.227 kb on + strandat 2418.227 kb on + strandat 2418.235 kb on - strandat 2418.252 kb on + strandat 2418.260 kb on - strandat 2418.308 kb on - strand, within CSW01_11375at 2418.394 kb on + strand, within CSW01_11375at 2418.394 kb on + strand, within CSW01_11375at 2418.402 kb on - strand, within CSW01_11375at 2418.415 kb on + strand, within CSW01_11375at 2418.415 kb on + strand, within CSW01_11375at 2418.487 kb on + strand, within CSW01_11375at 2418.525 kb on + strand, within CSW01_11375at 2418.564 kb on - strand, within CSW01_11375at 2418.589 kb on + strand, within CSW01_11375at 2418.589 kb on - strand, within CSW01_11375at 2418.614 kb on + strand, within CSW01_11375at 2418.646 kb on + strand, within CSW01_11375at 2418.646 kb on + strand, within CSW01_11375at 2418.654 kb on - strand, within CSW01_11375at 2418.654 kb on - strand, within CSW01_11375at 2418.654 kb on - strand, within CSW01_11375at 2418.654 kb on - strand, within CSW01_11375at 2418.675 kb on + strand, within CSW01_11375at 2418.715 kb on + strand, within CSW01_11375at 2418.728 kb on + strand, within CSW01_11375at 2418.771 kb on + strand, within CSW01_11375at 2418.791 kb on - strand, within CSW01_11375at 2418.791 kb on - strand, within CSW01_11375at 2418.882 kb on - strand, within CSW01_11375at 2418.892 kb on - strand, within CSW01_11375at 2418.892 kb on - strand, within CSW01_11375at 2418.999 kb on - strand, within CSW01_11375at 2419.081 kb on - strand, within CSW01_11375at 2419.224 kb on - strand, within CSW01_11375at 2419.302 kb on + strandat 2419.307 kb on + strandat 2419.363 kb on - strandat 2419.373 kb on - strandat 2419.454 kb on - strandat 2420.203 kb on + strandat 2420.203 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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2,417,212 - CSW01_11370 0.67 -0.0
2,417,214 + CSW01_11370 0.68 -1.0
2,417,231 + CSW01_11370 0.68 -0.3
2,417,231 + CSW01_11370 0.68 +0.0
2,417,239 - CSW01_11370 0.69 -0.1
2,417,239 - CSW01_11370 0.69 +0.2
2,417,239 - CSW01_11370 0.69 +0.7
2,417,239 - CSW01_11370 0.69 -0.9
2,417,250 - CSW01_11370 0.69 -0.5
2,417,284 - CSW01_11370 0.70 +0.5
2,417,321 + CSW01_11370 0.72 +0.1
2,417,321 + CSW01_11370 0.72 -0.2
2,417,329 - CSW01_11370 0.72 -0.8
2,417,329 - CSW01_11370 0.72 -0.1
2,417,329 - CSW01_11370 0.72 +0.1
2,417,329 - CSW01_11370 0.72 -0.7
2,417,359 + CSW01_11370 0.73 -0.7
2,417,359 + CSW01_11370 0.73 +0.5
2,417,378 + CSW01_11370 0.74 +0.8
2,417,378 + CSW01_11370 0.74 -0.4
2,417,378 + CSW01_11370 0.74 -0.3
2,417,386 - CSW01_11370 0.75 -0.0
2,417,386 - CSW01_11370 0.75 +0.0
2,417,504 - CSW01_11370 0.79 +0.3
2,417,510 - CSW01_11370 0.80 -0.5
2,417,537 + CSW01_11370 0.81 -0.1
2,417,547 + CSW01_11370 0.81 +0.5
2,417,555 - CSW01_11370 0.82 +0.1
2,417,615 - CSW01_11370 0.84 -0.8
2,417,640 + CSW01_11370 0.85 +0.5
2,417,711 + CSW01_11370 0.88 -0.5
2,417,711 + CSW01_11370 0.88 +0.0
2,417,719 - CSW01_11370 0.88 -0.6
2,417,812 + -0.1
2,417,812 + +0.2
2,417,820 - +0.7
2,417,906 - +0.4
2,417,930 - -0.8
2,417,985 + -0.3
2,417,985 + -0.2
2,417,993 - +0.1
2,417,993 - +0.2
2,417,993 - +0.2
2,417,993 - +0.9
2,418,000 - +0.6
2,418,007 + -0.8
2,418,007 + +0.0
2,418,022 + -0.0
2,418,022 + +0.2
2,418,022 + -0.6
2,418,032 - -0.1
2,418,130 - -0.0
2,418,170 - -1.2
2,418,227 + +0.4
2,418,227 + +1.5
2,418,227 + -0.5
2,418,235 - +0.0
2,418,252 + -0.7
2,418,260 - +2.5
2,418,308 - CSW01_11375 0.12 +0.0
2,418,394 + CSW01_11375 0.19 -0.8
2,418,394 + CSW01_11375 0.19 +0.8
2,418,402 - CSW01_11375 0.20 -0.4
2,418,415 + CSW01_11375 0.21 +0.9
2,418,415 + CSW01_11375 0.21 +1.8
2,418,487 + CSW01_11375 0.27 -0.4
2,418,525 + CSW01_11375 0.30 +0.2
2,418,564 - CSW01_11375 0.33 +0.0
2,418,589 + CSW01_11375 0.35 +0.6
2,418,589 - CSW01_11375 0.35 +0.2
2,418,614 + CSW01_11375 0.37 +0.1
2,418,646 + CSW01_11375 0.39 +0.7
2,418,646 + CSW01_11375 0.39 +1.0
2,418,654 - CSW01_11375 0.40 +0.8
2,418,654 - CSW01_11375 0.40 +0.4
2,418,654 - CSW01_11375 0.40 +0.5
2,418,654 - CSW01_11375 0.40 +0.3
2,418,675 + CSW01_11375 0.41 +0.0
2,418,715 + CSW01_11375 0.45 +0.5
2,418,728 + CSW01_11375 0.46 +0.6
2,418,771 + CSW01_11375 0.49 +1.1
2,418,791 - CSW01_11375 0.51 +0.1
2,418,791 - CSW01_11375 0.51 +0.6
2,418,882 - CSW01_11375 0.58 +0.8
2,418,892 - CSW01_11375 0.59 +0.6
2,418,892 - CSW01_11375 0.59 +1.4
2,418,999 - CSW01_11375 0.67 -0.1
2,419,081 - CSW01_11375 0.74 +0.1
2,419,224 - CSW01_11375 0.85 +0.4
2,419,302 + -0.2
2,419,307 + +1.0
2,419,363 - +0.7
2,419,373 - +0.9
2,419,454 - -1.1
2,420,203 + -0.4
2,420,203 + -0.2

Or see this region's nucleotide sequence