Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09265

Experiment: LB_Anaerobic_18HR_ZN20B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_09255 and CSW01_09260 are separated by 145 nucleotidesCSW01_09260 and CSW01_09265 are separated by 40 nucleotidesCSW01_09265 and CSW01_09270 are separated by 106 nucleotides CSW01_09255: CSW01_09255 - cysteine--tRNA ligase, at 1,986,038 to 1,987,417 _09255 CSW01_09260: CSW01_09260 - peptidylprolyl isomerase, at 1,987,563 to 1,988,057 _09260 CSW01_09265: CSW01_09265 - UDP-2,3-diacylglucosamine diphosphatase, at 1,988,098 to 1,988,827 _09265 CSW01_09270: CSW01_09270 - EAL domain-containing protein, at 1,988,934 to 1,990,148 _09270 Position (kb) 1988 1989Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1987.457 kb on + strandat 1987.457 kb on + strandat 1987.553 kb on + strandat 1987.562 kb on + strandat 1987.680 kb on + strand, within CSW01_09260at 1987.729 kb on + strand, within CSW01_09260at 1987.729 kb on + strand, within CSW01_09260at 1987.729 kb on + strand, within CSW01_09260at 1987.729 kb on + strand, within CSW01_09260at 1987.729 kb on + strand, within CSW01_09260at 1987.780 kb on + strand, within CSW01_09260at 1987.792 kb on + strand, within CSW01_09260at 1988.052 kb on + strandat 1988.791 kb on - strandat 1989.095 kb on + strand, within CSW01_09270at 1989.095 kb on + strand, within CSW01_09270at 1989.103 kb on - strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.220 kb on + strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.228 kb on - strand, within CSW01_09270at 1989.230 kb on + strand, within CSW01_09270at 1989.238 kb on - strand, within CSW01_09270at 1989.452 kb on + strand, within CSW01_09270at 1989.460 kb on - strand, within CSW01_09270at 1989.460 kb on - strand, within CSW01_09270at 1989.460 kb on - strand, within CSW01_09270at 1989.460 kb on - strand, within CSW01_09270at 1989.508 kb on - strand, within CSW01_09270at 1989.508 kb on - strand, within CSW01_09270at 1989.565 kb on - strand, within CSW01_09270at 1989.641 kb on + strand, within CSW01_09270at 1989.699 kb on + strand, within CSW01_09270at 1989.704 kb on + strand, within CSW01_09270at 1989.709 kb on + strand, within CSW01_09270at 1989.717 kb on - strand, within CSW01_09270at 1989.717 kb on - strand, within CSW01_09270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
remove
1,987,457 + -1.9
1,987,457 + +0.4
1,987,553 + -0.7
1,987,562 + +0.4
1,987,680 + CSW01_09260 0.24 +0.2
1,987,729 + CSW01_09260 0.34 +0.5
1,987,729 + CSW01_09260 0.34 -0.2
1,987,729 + CSW01_09260 0.34 +0.2
1,987,729 + CSW01_09260 0.34 -0.5
1,987,729 + CSW01_09260 0.34 +0.3
1,987,780 + CSW01_09260 0.44 +0.3
1,987,792 + CSW01_09260 0.46 +0.4
1,988,052 + -0.2
1,988,791 - +0.6
1,989,095 + CSW01_09270 0.13 +0.3
1,989,095 + CSW01_09270 0.13 +0.1
1,989,103 - CSW01_09270 0.14 +0.8
1,989,220 + CSW01_09270 0.24 +0.4
1,989,220 + CSW01_09270 0.24 +0.6
1,989,220 + CSW01_09270 0.24 +0.3
1,989,220 + CSW01_09270 0.24 +0.5
1,989,220 + CSW01_09270 0.24 +0.0
1,989,220 + CSW01_09270 0.24 -0.2
1,989,220 + CSW01_09270 0.24 +0.9
1,989,220 + CSW01_09270 0.24 -0.7
1,989,220 + CSW01_09270 0.24 -0.8
1,989,220 + CSW01_09270 0.24 -0.2
1,989,220 + CSW01_09270 0.24 +0.3
1,989,220 + CSW01_09270 0.24 -0.1
1,989,220 + CSW01_09270 0.24 +0.1
1,989,220 + CSW01_09270 0.24 -0.4
1,989,228 - CSW01_09270 0.24 -0.1
1,989,228 - CSW01_09270 0.24 +0.3
1,989,228 - CSW01_09270 0.24 +1.0
1,989,228 - CSW01_09270 0.24 -1.0
1,989,228 - CSW01_09270 0.24 +0.1
1,989,228 - CSW01_09270 0.24 +0.2
1,989,228 - CSW01_09270 0.24 -0.6
1,989,228 - CSW01_09270 0.24 +0.0
1,989,230 + CSW01_09270 0.24 +0.8
1,989,238 - CSW01_09270 0.25 -0.5
1,989,452 + CSW01_09270 0.43 -0.2
1,989,460 - CSW01_09270 0.43 +0.0
1,989,460 - CSW01_09270 0.43 +0.1
1,989,460 - CSW01_09270 0.43 +2.8
1,989,460 - CSW01_09270 0.43 +1.8
1,989,508 - CSW01_09270 0.47 -0.1
1,989,508 - CSW01_09270 0.47 -0.0
1,989,565 - CSW01_09270 0.52 -0.2
1,989,641 + CSW01_09270 0.58 +0.9
1,989,699 + CSW01_09270 0.63 +0.4
1,989,704 + CSW01_09270 0.63 -1.2
1,989,709 + CSW01_09270 0.64 +0.0
1,989,717 - CSW01_09270 0.64 +0.5
1,989,717 - CSW01_09270 0.64 +0.6

Or see this region's nucleotide sequence