Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09070

Experiment: LB_Anaerobic_18HR_ZN20B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_18HR_ZN20B
1,948,599	-		CSW01_09065	0.12	-0.5
1,948,621	-		CSW01_09065	0.14	+0.2
1,948,698	+		CSW01_09065	0.22	-0.5
1,948,716	-		CSW01_09065	0.24	+0.9
1,948,716	-		CSW01_09065	0.24	-0.1
1,948,716	-		CSW01_09065	0.24	-0.6
1,948,748	+		CSW01_09065	0.27	-0.4
1,948,748	+		CSW01_09065	0.27	+0.1
1,948,748	+		CSW01_09065	0.27	+0.6
1,948,748	+		CSW01_09065	0.27	-0.1
1,948,748	+		CSW01_09065	0.27	-1.2
1,948,756	-		CSW01_09065	0.28	+0.1
1,948,872	-		CSW01_09065	0.40	+0.5
1,948,902	-		CSW01_09065	0.43	-0.3
1,948,966	-		CSW01_09065	0.49	-0.1
1,949,037	+		CSW01_09065	0.56	+0.2
1,949,045	-		CSW01_09065	0.57	-0.1
1,949,045	-		CSW01_09065	0.57	+0.2
1,949,064	+		CSW01_09065	0.59	+0.3
1,949,086	-		CSW01_09065	0.61	+0.7
1,949,131	+		CSW01_09065	0.66	+0.0
1,949,138	+		CSW01_09065	0.67	-0.5
1,949,138	-		CSW01_09065	0.67	+0.4
1,949,138	-		CSW01_09065	0.67	+0.6
1,949,179	-		CSW01_09065	0.71	+1.8
1,949,181	+		CSW01_09065	0.71	-0.3
1,949,181	+		CSW01_09065	0.71	+0.1
1,949,189	-		CSW01_09065	0.72	+0.5
1,949,227	-		CSW01_09065	0.76	-0.5
1,949,251	-		CSW01_09065	0.78	-0.3
1,949,303	+		CSW01_09065	0.83	-0.1
1,949,303	+		CSW01_09065	0.83	+0.5
1,949,303	+		CSW01_09065	0.83	+0.2
1,949,303	+		CSW01_09065	0.83	-0.2
1,949,303	+		CSW01_09065	0.83	-0.5
1,949,303	+		CSW01_09065	0.83	+1.1
1,949,303	+		CSW01_09065	0.83	+0.4
1,949,303	+		CSW01_09065	0.83	-0.2
1,949,309	+		CSW01_09065	0.84	+0.0
1,949,407	+				+0.6
1,949,407	+				+0.0
1,949,407	+				+0.6
1,949,407	+				+0.2
1,949,407	+				+0.0
1,949,407	+				-0.2
1,949,407	+				-0.3
1,949,407	+				+0.7
1,949,407	+				-0.0
1,949,407	+				-0.2
1,949,407	+				+1.8
1,949,407	+				-0.6
1,949,408	-				-0.6
1,949,415	-				+0.3
1,949,415	-				+0.4
1,949,415	-				+0.8
1,949,415	-				-0.9
1,949,422	-				-0.2
1,949,599	-		CSW01_09070	0.15	-0.1
1,949,646	+		CSW01_09070	0.23	+0.5
1,949,656	+		CSW01_09070	0.24	-0.5
1,949,661	+		CSW01_09070	0.25	+0.4
1,949,661	+		CSW01_09070	0.25	+0.2
1,949,671	-		CSW01_09070	0.27	-1.4
1,949,688	-		CSW01_09070	0.29	-0.8
1,949,688	-		CSW01_09070	0.29	-0.4
1,949,702	-		CSW01_09070	0.31	+1.5
1,949,709	+		CSW01_09070	0.32	-0.2
1,949,717	-		CSW01_09070	0.34	+1.8
1,949,733	+		CSW01_09070	0.36	-0.4
1,949,809	+		CSW01_09070	0.48	-0.3
1,949,817	-		CSW01_09070	0.49	-0.2
1,949,822	-		CSW01_09070	0.50	-0.7
1,949,822	-		CSW01_09070	0.50	-0.2
1,949,827	+		CSW01_09070	0.51	-0.4
1,949,835	-		CSW01_09070	0.52	-1.0
1,949,862	+		CSW01_09070	0.56	-0.6
1,949,870	-		CSW01_09070	0.58	-0.6
1,949,876	-		CSW01_09070	0.59	+1.3
1,949,943	-		CSW01_09070	0.69	-0.7
1,949,945	+		CSW01_09070	0.69	-1.1
1,949,953	-		CSW01_09070	0.71	-0.4
1,949,967	+		CSW01_09070	0.73	-2.1
1,949,992	+		CSW01_09070	0.77	-1.0
1,949,998	-		CSW01_09070	0.78	-2.1
1,950,148	+				+0.1
1,950,154	+				-1.6
1,950,156	-				-0.6
1,950,161	-				-0.1
1,950,161	-				+0.3
1,950,161	-				-0.3
1,950,189	+				-0.8
1,950,210	-				-0.0
1,950,237	+				-2.4
1,950,245	-				+1.4
1,950,249	+				-0.4
1,950,269	+				+1.8
1,950,274	+				-0.8
1,950,274	+				+0.5
1,950,274	+				-0.3
1,950,274	-				+0.9
1,950,282	-				-0.6
1,950,282	-				+0.0
1,950,282	-				-0.1
1,950,282	-				+1.2
1,950,282	-				-0.7
1,950,282	-				-0.5
1,950,300	-				-0.7
1,950,302	-				+0.6
1,950,304	-				-0.4
1,950,306	+				+0.3
1,950,314	-				+0.4
1,950,317	+				-1.6
1,950,323	+				+0.6
1,950,329	+				-0.1
1,950,329	+				+0.3
1,950,329	+				-0.1
1,950,329	+				-0.8
1,950,329	+				-0.1
1,950,329	+				-0.7
1,950,329	+				-0.2
1,950,329	+				-0.8
1,950,329	+				+0.2
1,950,329	+				-1.2
1,950,329	+				+0.2
1,950,329	+				+0.8
1,950,329	+				-0.6
1,950,329	+				-0.9
1,950,329	+				-0.2
1,950,329	+				+0.5
1,950,329	+				+0.3
1,950,329	+				+0.5
1,950,329	+				+0.2
1,950,329	+				+0.5
1,950,329	+				-0.1
1,950,329	+				-1.0
1,950,329	+				+1.1
1,950,329	+				-0.6
1,950,329	+				-0.1
1,950,329	+				+1.0
1,950,329	+				+1.0
1,950,329	+				+0.3
1,950,331	-				+0.4
1,950,335	-				+0.4
1,950,337	-				-0.5
1,950,337	-				-0.1
1,950,337	-				+0.2
1,950,337	-				-0.9
1,950,337	-				+0.1
1,950,337	-				+0.8
1,950,337	-				-0.3
1,950,337	-				-0.4
1,950,337	-				+0.4
1,950,337	-				+0.3
1,950,337	-				-0.3
1,950,337	-				+0.9
1,950,337	-				-0.0
1,950,337	-				-0.4
1,950,337	-				+0.2
1,950,337	-				+0.3
1,950,337	-				+0.1
1,950,337	-				+0.2
1,950,337	-				+0.6
1,950,337	-				+0.4
1,950,337	-				-0.1
1,950,337	-				-0.2
1,950,337	-				-0.6
1,950,337	-				-0.9
1,950,337	-				-1.0
1,950,339	+				+0.5
1,950,339	+				+2.0
1,950,339	+				+1.2
1,950,339	+				-0.8
1,950,339	+				+0.1
1,950,339	+				+0.1
1,950,339	+				+0.3
1,950,339	+				-0.0
1,950,339	+				-0.4
1,950,339	+				-0.8
1,950,339	+				+0.2
1,950,339	+				+1.8
1,950,339	+				-0.2
1,950,339	+				-0.7
1,950,339	+				+0.5
1,950,339	+				-0.7
1,950,339	+				+1.1
1,950,339	+				-1.0
1,950,339	+				-0.1
1,950,339	+				-0.3
1,950,339	+				-0.6
1,950,339	+				+0.5
1,950,339	+				-0.2
1,950,339	+				+0.0
1,950,339	+				-0.5
1,950,339	+				+0.3
1,950,339	+				-0.5
1,950,339	+				+0.1
1,950,339	+				+0.2
1,950,339	+				-0.5
1,950,339	+				+1.1
1,950,339	+				+0.2
1,950,339	+				+0.0
1,950,339	-				-0.7
1,950,347	-				-0.7
1,950,347	-				+0.8
1,950,347	-				-0.2
1,950,347	-				-1.3
1,950,347	-				-1.6
1,950,347	-				-0.0
1,950,347	-				-1.2
1,950,347	-				-0.2
1,950,347	-				-0.2
1,950,347	-				-1.4
1,950,347	-				+1.8
1,950,347	-				-1.0
1,950,347	-				-0.5
1,950,347	-				+0.1
1,950,347	-				-0.2
1,950,347	-				-0.3
1,950,347	-				-0.8
1,950,347	-				+0.1
1,950,347	-				+0.1
1,950,347	-				-0.9
1,950,347	-				+1.3
1,950,347	-				-0.0
1,950,347	-				+0.0
1,950,347	-				+0.4
1,950,347	-				+0.4
1,950,375	+				+0.2
1,950,383	-				-1.1
1,950,383	-				-2.9
1,950,408	+				-0.2
1,950,484	+				-0.1
1,950,484	+				+0.5
1,950,535	+		CSW01_09075	0.12	+1.3
1,950,535	+		CSW01_09075	0.12	+0.6
1,950,535	+		CSW01_09075	0.12	+1.8
1,950,535	+		CSW01_09075	0.12	-0.2
1,950,535	+		CSW01_09075	0.12	+0.9
1,950,535	+		CSW01_09075	0.12	+0.5
1,950,543	-		CSW01_09075	0.13	+0.6
1,950,543	-		CSW01_09075	0.13	-0.5
1,950,545	+		CSW01_09075	0.13	-0.5
1,950,545	+		CSW01_09075	0.13	+0.0
1,950,556	-		CSW01_09075	0.15	-1.5
1,950,558	+		CSW01_09075	0.15	+1.0
1,950,605	+		CSW01_09075	0.20	-0.7
1,950,612	+		CSW01_09075	0.21	+0.6
1,950,622	+		CSW01_09075	0.22	+0.2
1,950,630	-		CSW01_09075	0.23	-2.4
1,950,630	-		CSW01_09075	0.23	-1.1
1,950,630	-		CSW01_09075	0.23	-2.2
1,950,733	-		CSW01_09075	0.35	+1.2
1,950,733	-		CSW01_09075	0.35	-0.3
1,950,733	-		CSW01_09075	0.35	-0.9
1,950,748	-		CSW01_09075	0.37	+0.2
1,950,829	+		CSW01_09075	0.47	-0.1
1,950,860	+		CSW01_09075	0.50	-0.2
1,950,860	+		CSW01_09075	0.50	+1.7
1,950,871	+		CSW01_09075	0.52	+0.2
1,950,879	-		CSW01_09075	0.53	+0.6
1,950,880	-		CSW01_09075	0.53	+0.1
1,950,890	-		CSW01_09075	0.54	+1.0
1,950,984	-		CSW01_09075	0.65	-0.4
1,950,995	-		CSW01_09075	0.66	-0.5