Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05495

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05490 and CSW01_05495 are separated by 245 nucleotidesCSW01_05495 and CSW01_05500 overlap by 4 nucleotides CSW01_05490: CSW01_05490 - L-threonylcarbamoyladenylate synthase, at 1,145,001 to 1,145,990 _05490 CSW01_05495: CSW01_05495 - histidine kinase, at 1,146,236 to 1,146,601 _05495 CSW01_05500: CSW01_05500 - response regulator, at 1,146,598 to 1,147,740 _05500 Position (kb) 1146 1147Strain fitness (log2 ratio) -1 0 1at 1145.346 kb on + strand, within CSW01_05490at 1145.376 kb on + strand, within CSW01_05490at 1145.468 kb on - strand, within CSW01_05490at 1145.468 kb on - strand, within CSW01_05490at 1145.556 kb on - strand, within CSW01_05490at 1145.647 kb on + strand, within CSW01_05490at 1145.670 kb on - strand, within CSW01_05490at 1145.670 kb on - strand, within CSW01_05490at 1145.759 kb on - strand, within CSW01_05490at 1145.867 kb on - strand, within CSW01_05490at 1146.000 kb on + strandat 1146.042 kb on - strandat 1146.104 kb on - strandat 1146.179 kb on + strandat 1146.192 kb on + strandat 1146.247 kb on - strandat 1146.271 kb on + strandat 1146.300 kb on + strand, within CSW01_05495at 1146.303 kb on - strand, within CSW01_05495at 1146.305 kb on + strand, within CSW01_05495at 1146.315 kb on + strand, within CSW01_05495at 1146.323 kb on - strand, within CSW01_05495at 1146.325 kb on - strand, within CSW01_05495at 1146.401 kb on - strand, within CSW01_05495at 1146.415 kb on - strand, within CSW01_05495at 1146.549 kb on + strand, within CSW01_05495at 1146.557 kb on - strand, within CSW01_05495at 1146.570 kb on + strandat 1146.570 kb on + strandat 1146.570 kb on + strandat 1146.570 kb on + strandat 1146.578 kb on - strandat 1146.688 kb on + strandat 1146.720 kb on + strand, within CSW01_05500at 1146.824 kb on + strand, within CSW01_05500at 1146.854 kb on - strand, within CSW01_05500at 1146.883 kb on + strand, within CSW01_05500at 1146.891 kb on - strand, within CSW01_05500at 1146.909 kb on + strand, within CSW01_05500at 1146.909 kb on + strand, within CSW01_05500at 1146.978 kb on + strand, within CSW01_05500at 1146.991 kb on - strand, within CSW01_05500at 1147.032 kb on + strand, within CSW01_05500at 1147.032 kb on + strand, within CSW01_05500at 1147.032 kb on + strand, within CSW01_05500at 1147.040 kb on - strand, within CSW01_05500at 1147.108 kb on + strand, within CSW01_05500at 1147.261 kb on - strand, within CSW01_05500at 1147.269 kb on + strand, within CSW01_05500at 1147.312 kb on + strand, within CSW01_05500at 1147.356 kb on - strand, within CSW01_05500at 1147.433 kb on - strand, within CSW01_05500at 1147.470 kb on + strand, within CSW01_05500at 1147.576 kb on - strand, within CSW01_05500

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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1,145,346 + CSW01_05490 0.35 -0.5
1,145,376 + CSW01_05490 0.38 -0.0
1,145,468 - CSW01_05490 0.47 +0.2
1,145,468 - CSW01_05490 0.47 +0.2
1,145,556 - CSW01_05490 0.56 -1.0
1,145,647 + CSW01_05490 0.65 +1.5
1,145,670 - CSW01_05490 0.68 -0.3
1,145,670 - CSW01_05490 0.68 -0.8
1,145,759 - CSW01_05490 0.77 -0.3
1,145,867 - CSW01_05490 0.87 +0.3
1,146,000 + -0.7
1,146,042 - +0.4
1,146,104 - -0.4
1,146,179 + -0.3
1,146,192 + -0.5
1,146,247 - -0.9
1,146,271 + +0.4
1,146,300 + CSW01_05495 0.17 +0.7
1,146,303 - CSW01_05495 0.18 +0.3
1,146,305 + CSW01_05495 0.19 +1.5
1,146,315 + CSW01_05495 0.22 +0.4
1,146,323 - CSW01_05495 0.24 -0.1
1,146,325 - CSW01_05495 0.24 +0.7
1,146,401 - CSW01_05495 0.45 +1.0
1,146,415 - CSW01_05495 0.49 -0.1
1,146,549 + CSW01_05495 0.86 +0.6
1,146,557 - CSW01_05495 0.88 +0.2
1,146,570 + -0.1
1,146,570 + +0.4
1,146,570 + +0.2
1,146,570 + +0.5
1,146,578 - +0.2
1,146,688 + -0.2
1,146,720 + CSW01_05500 0.11 -1.1
1,146,824 + CSW01_05500 0.20 +0.3
1,146,854 - CSW01_05500 0.22 -0.2
1,146,883 + CSW01_05500 0.25 -1.4
1,146,891 - CSW01_05500 0.26 +0.2
1,146,909 + CSW01_05500 0.27 +0.6
1,146,909 + CSW01_05500 0.27 +0.0
1,146,978 + CSW01_05500 0.33 +0.9
1,146,991 - CSW01_05500 0.34 -0.4
1,147,032 + CSW01_05500 0.38 -0.2
1,147,032 + CSW01_05500 0.38 +1.5
1,147,032 + CSW01_05500 0.38 -0.3
1,147,040 - CSW01_05500 0.39 -0.5
1,147,108 + CSW01_05500 0.45 +0.2
1,147,261 - CSW01_05500 0.58 +0.5
1,147,269 + CSW01_05500 0.59 +0.7
1,147,312 + CSW01_05500 0.62 +0.2
1,147,356 - CSW01_05500 0.66 -0.2
1,147,433 - CSW01_05500 0.73 +1.1
1,147,470 + CSW01_05500 0.76 +0.3
1,147,576 - CSW01_05500 0.86 +1.2

Or see this region's nucleotide sequence