Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05155

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05145 and CSW01_05150 are separated by 26 nucleotidesCSW01_05150 and CSW01_05155 are separated by 1 nucleotidesCSW01_05155 and CSW01_05160 are separated by 11 nucleotides CSW01_05145: CSW01_05145 - endonuclease III, at 1,079,098 to 1,079,739 _05145 CSW01_05150: CSW01_05150 - electron transport complex subunit E, at 1,079,766 to 1,080,458 _05150 CSW01_05155: CSW01_05155 - electron transport complex subunit G, at 1,080,460 to 1,081,089 _05155 CSW01_05160: CSW01_05160 - electron transport complex subunit D, at 1,081,101 to 1,082,147 _05160 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -1 0 1at 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.775 kb on + strandat 1079.790 kb on + strandat 1079.790 kb on + strandat 1079.798 kb on - strandat 1080.469 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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1,079,772 - +1.7
1,079,772 - -0.2
1,079,772 - +0.4
1,079,775 + -0.2
1,079,790 + +0.3
1,079,790 + -0.1
1,079,798 - -0.3
1,080,469 - -1.3

Or see this region's nucleotide sequence