Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04240 and CSW01_04245 are separated by 109 nucleotides CSW01_04245 and CSW01_04250 are separated by 275 nucleotides CSW01_04250 and CSW01_04255 are separated by 440 nucleotides
CSW01_04240: CSW01_04240 - peptidase, at 883,464 to 884,402
_04240
CSW01_04245: CSW01_04245 - 2-Cys peroxiredoxin, at 884,512 to 885,006
_04245
CSW01_04250: CSW01_04250 - toxin coregulated pilus biosynthesis protein I, at 885,282 to 887,144
_04250
CSW01_04255: CSW01_04255 - toxin coregulated pilus biosynthesis protein P, at 887,585 to 888,250
_04255
Position (kb) 885
886
887
888 Strain fitness (log2 ratio) -2
-1
0
1 at 884.282 kb on - strand, within CSW01_04240 at 884.282 kb on - strand, within CSW01_04240 at 884.282 kb on - strand, within CSW01_04240 at 884.319 kb on + strand at 884.319 kb on + strand at 884.337 kb on - strand at 884.339 kb on - strand at 884.477 kb on + strand at 884.477 kb on + strand at 884.485 kb on - strand at 884.576 kb on - strand, within CSW01_04245 at 884.585 kb on + strand, within CSW01_04245 at 884.593 kb on - strand, within CSW01_04245 at 884.593 kb on - strand, within CSW01_04245 at 884.593 kb on - strand, within CSW01_04245 at 884.593 kb on - strand, within CSW01_04245 at 884.593 kb on - strand, within CSW01_04245 at 884.613 kb on - strand, within CSW01_04245 at 884.613 kb on - strand, within CSW01_04245 at 884.740 kb on + strand, within CSW01_04245 at 884.740 kb on + strand, within CSW01_04245 at 884.743 kb on - strand, within CSW01_04245 at 884.748 kb on - strand, within CSW01_04245 at 884.748 kb on - strand, within CSW01_04245 at 884.761 kb on + strand, within CSW01_04245 at 884.761 kb on + strand, within CSW01_04245 at 884.761 kb on + strand, within CSW01_04245 at 884.766 kb on + strand, within CSW01_04245 at 884.769 kb on - strand, within CSW01_04245 at 884.769 kb on - strand, within CSW01_04245 at 884.769 kb on - strand, within CSW01_04245 at 884.784 kb on + strand, within CSW01_04245 at 884.784 kb on + strand, within CSW01_04245 at 884.784 kb on + strand, within CSW01_04245 at 884.784 kb on + strand, within CSW01_04245 at 884.786 kb on + strand, within CSW01_04245 at 884.789 kb on + strand, within CSW01_04245 at 884.789 kb on + strand, within CSW01_04245 at 884.792 kb on - strand, within CSW01_04245 at 884.792 kb on - strand, within CSW01_04245 at 884.792 kb on - strand, within CSW01_04245 at 884.792 kb on - strand, within CSW01_04245 at 884.792 kb on - strand, within CSW01_04245 at 884.794 kb on + strand, within CSW01_04245 at 884.797 kb on - strand, within CSW01_04245 at 884.804 kb on - strand, within CSW01_04245 at 884.819 kb on - strand, within CSW01_04245 at 884.819 kb on - strand, within CSW01_04245 at 884.849 kb on - strand, within CSW01_04245 at 884.849 kb on - strand, within CSW01_04245 at 884.861 kb on + strand, within CSW01_04245 at 884.861 kb on + strand, within CSW01_04245 at 884.869 kb on - strand, within CSW01_04245 at 884.906 kb on - strand, within CSW01_04245 at 884.928 kb on - strand, within CSW01_04245 at 884.928 kb on - strand, within CSW01_04245 at 884.933 kb on - strand, within CSW01_04245 at 885.076 kb on + strand at 885.077 kb on - strand at 885.084 kb on - strand at 885.085 kb on + strand at 885.092 kb on - strand at 885.093 kb on - strand at 885.093 kb on - strand at 885.093 kb on - strand at 885.093 kb on - strand at 885.093 kb on - strand at 885.119 kb on + strand at 885.119 kb on - strand at 885.127 kb on - strand at 885.147 kb on - strand at 885.198 kb on + strand at 885.198 kb on + strand at 885.201 kb on + strand at 885.201 kb on + strand at 885.201 kb on + strand at 885.201 kb on + strand at 885.201 kb on + strand at 885.201 kb on + strand at 885.201 kb on + strand at 885.201 kb on + strand at 885.201 kb on + strand at 885.201 kb on + strand at 885.201 kb on - strand at 885.201 kb on - strand at 885.201 kb on - strand at 885.208 kb on + strand at 885.208 kb on + strand at 885.209 kb on - strand at 885.209 kb on - strand at 885.209 kb on - strand at 885.209 kb on - strand at 885.212 kb on + strand at 885.217 kb on - strand at 885.256 kb on + strand at 885.256 kb on + strand at 885.262 kb on - strand at 885.264 kb on - strand at 885.264 kb on - strand at 885.264 kb on - strand at 885.264 kb on - strand at 885.264 kb on - strand at 885.264 kb on - strand at 885.346 kb on - strand at 885.356 kb on - strand at 885.370 kb on - strand at 885.465 kb on + strand at 885.470 kb on + strand, within CSW01_04250 at 885.480 kb on + strand, within CSW01_04250 at 885.480 kb on - strand, within CSW01_04250 at 885.518 kb on + strand, within CSW01_04250 at 885.526 kb on - strand, within CSW01_04250 at 885.536 kb on + strand, within CSW01_04250 at 885.575 kb on + strand, within CSW01_04250 at 885.575 kb on + strand, within CSW01_04250 at 885.575 kb on + strand, within CSW01_04250 at 885.583 kb on - strand, within CSW01_04250 at 885.583 kb on - strand, within CSW01_04250 at 885.583 kb on - strand, within CSW01_04250 at 885.596 kb on - strand, within CSW01_04250 at 885.596 kb on - strand, within CSW01_04250 at 885.612 kb on + strand, within CSW01_04250 at 885.668 kb on + strand, within CSW01_04250 at 885.668 kb on + strand, within CSW01_04250 at 885.676 kb on - strand, within CSW01_04250 at 885.684 kb on - strand, within CSW01_04250 at 885.713 kb on + strand, within CSW01_04250 at 885.714 kb on + strand, within CSW01_04250 at 885.714 kb on + strand, within CSW01_04250 at 885.714 kb on + strand, within CSW01_04250 at 885.714 kb on + strand, within CSW01_04250 at 885.714 kb on + strand, within CSW01_04250 at 885.714 kb on + strand, within CSW01_04250 at 885.716 kb on + strand, within CSW01_04250 at 885.719 kb on - strand, within CSW01_04250 at 885.722 kb on - strand, within CSW01_04250 at 885.722 kb on - strand, within CSW01_04250 at 885.722 kb on - strand, within CSW01_04250 at 885.724 kb on - strand, within CSW01_04250 at 885.724 kb on - strand, within CSW01_04250 at 885.741 kb on - strand, within CSW01_04250 at 885.943 kb on + strand, within CSW01_04250 at 885.943 kb on + strand, within CSW01_04250 at 885.943 kb on + strand, within CSW01_04250 at 885.950 kb on + strand, within CSW01_04250 at 885.950 kb on + strand, within CSW01_04250 at 885.950 kb on + strand, within CSW01_04250 at 885.951 kb on - strand, within CSW01_04250 at 885.951 kb on - strand, within CSW01_04250 at 885.951 kb on - strand, within CSW01_04250 at 885.951 kb on - strand, within CSW01_04250 at 885.951 kb on - strand, within CSW01_04250 at 885.957 kb on + strand, within CSW01_04250 at 885.958 kb on - strand, within CSW01_04250 at 885.958 kb on - strand, within CSW01_04250 at 885.965 kb on - strand, within CSW01_04250 at 885.988 kb on + strand, within CSW01_04250 at 885.996 kb on - strand, within CSW01_04250 at 886.009 kb on + strand, within CSW01_04250 at 886.012 kb on - strand, within CSW01_04250 at 886.021 kb on + strand, within CSW01_04250 at 886.021 kb on + strand, within CSW01_04250 at 886.027 kb on - strand, within CSW01_04250 at 886.031 kb on + strand, within CSW01_04250 at 886.031 kb on + strand, within CSW01_04250 at 886.039 kb on - strand, within CSW01_04250 at 886.039 kb on - strand, within CSW01_04250 at 886.070 kb on - strand, within CSW01_04250 at 886.089 kb on - strand, within CSW01_04250 at 886.099 kb on - strand, within CSW01_04250 at 886.152 kb on - strand, within CSW01_04250 at 886.202 kb on + strand, within CSW01_04250 at 886.217 kb on + strand, within CSW01_04250 at 886.238 kb on + strand, within CSW01_04250 at 886.238 kb on + strand, within CSW01_04250 at 886.246 kb on - strand, within CSW01_04250 at 886.260 kb on - strand, within CSW01_04250 at 886.260 kb on - strand, within CSW01_04250 at 886.262 kb on + strand, within CSW01_04250 at 886.270 kb on - strand, within CSW01_04250 at 886.270 kb on - strand, within CSW01_04250 at 886.299 kb on - strand, within CSW01_04250 at 886.299 kb on - strand, within CSW01_04250 at 886.299 kb on - strand, within CSW01_04250 at 886.439 kb on + strand, within CSW01_04250 at 886.446 kb on + strand, within CSW01_04250 at 886.464 kb on + strand, within CSW01_04250 at 886.467 kb on + strand, within CSW01_04250 at 886.484 kb on - strand, within CSW01_04250 at 886.515 kb on - strand, within CSW01_04250 at 886.526 kb on - strand, within CSW01_04250 at 886.526 kb on - strand, within CSW01_04250 at 886.548 kb on + strand, within CSW01_04250 at 886.596 kb on - strand, within CSW01_04250 at 886.598 kb on + strand, within CSW01_04250 at 886.603 kb on - strand, within CSW01_04250 at 886.605 kb on + strand, within CSW01_04250 at 886.605 kb on + strand, within CSW01_04250 at 886.605 kb on + strand, within CSW01_04250 at 886.605 kb on + strand, within CSW01_04250 at 886.605 kb on + strand, within CSW01_04250 at 886.613 kb on - strand, within CSW01_04250 at 886.613 kb on - strand, within CSW01_04250 at 886.613 kb on - strand, within CSW01_04250 at 886.613 kb on - strand, within CSW01_04250 at 886.631 kb on - strand, within CSW01_04250 at 886.646 kb on - strand, within CSW01_04250 at 886.648 kb on + strand, within CSW01_04250 at 886.653 kb on + strand, within CSW01_04250 at 886.668 kb on + strand, within CSW01_04250 at 886.670 kb on - strand, within CSW01_04250 at 886.673 kb on + strand, within CSW01_04250 at 886.676 kb on + strand, within CSW01_04250 at 886.701 kb on + strand, within CSW01_04250 at 886.714 kb on - strand, within CSW01_04250 at 886.733 kb on - strand, within CSW01_04250 at 886.733 kb on - strand, within CSW01_04250 at 886.735 kb on + strand, within CSW01_04250 at 886.735 kb on + strand, within CSW01_04250 at 886.735 kb on + strand, within CSW01_04250 at 886.742 kb on + strand, within CSW01_04250 at 886.742 kb on + strand, within CSW01_04250 at 886.742 kb on - strand, within CSW01_04250 at 886.743 kb on - strand, within CSW01_04250 at 886.743 kb on - strand, within CSW01_04250 at 886.750 kb on - strand, within CSW01_04250 at 886.750 kb on - strand, within CSW01_04250 at 886.750 kb on - strand, within CSW01_04250 at 886.834 kb on - strand, within CSW01_04250 at 886.835 kb on + strand, within CSW01_04250 at 886.835 kb on + strand, within CSW01_04250 at 886.836 kb on + strand, within CSW01_04250 at 886.836 kb on + strand, within CSW01_04250 at 886.836 kb on + strand, within CSW01_04250 at 886.843 kb on - strand, within CSW01_04250 at 886.897 kb on - strand, within CSW01_04250 at 886.897 kb on - strand, within CSW01_04250 at 886.897 kb on - strand, within CSW01_04250 at 886.897 kb on - strand, within CSW01_04250 at 886.913 kb on - strand, within CSW01_04250 at 886.923 kb on - strand, within CSW01_04250 at 886.923 kb on - strand, within CSW01_04250 at 886.988 kb on + strand at 886.988 kb on + strand at 886.996 kb on + strand at 886.996 kb on + strand at 887.018 kb on + strand at 887.026 kb on - strand at 887.026 kb on - strand at 887.051 kb on + strand at 887.060 kb on + strand at 887.068 kb on - strand at 887.081 kb on - strand at 887.302 kb on + strand at 887.311 kb on + strand at 887.311 kb on + strand at 887.367 kb on + strand at 887.367 kb on + strand at 887.367 kb on + strand at 887.369 kb on + strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.375 kb on - strand at 887.377 kb on - strand at 887.377 kb on - strand at 887.377 kb on - strand at 887.379 kb on + strand at 887.379 kb on + strand at 887.379 kb on + strand at 887.387 kb on - strand at 887.387 kb on - strand at 887.387 kb on - strand at 887.387 kb on - strand at 887.387 kb on - strand at 887.588 kb on + strand at 887.588 kb on + strand at 887.588 kb on + strand at 887.590 kb on - strand at 887.623 kb on + strand at 887.631 kb on + strand at 887.636 kb on + strand at 887.653 kb on - strand, within CSW01_04255 at 887.653 kb on - strand, within CSW01_04255 at 887.653 kb on - strand, within CSW01_04255 at 887.679 kb on - strand, within CSW01_04255 at 887.687 kb on - strand, within CSW01_04255 at 887.689 kb on + strand, within CSW01_04255 at 887.689 kb on + strand, within CSW01_04255 at 887.689 kb on + strand, within CSW01_04255 at 887.697 kb on - strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.703 kb on + strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.711 kb on - strand, within CSW01_04255 at 887.713 kb on + strand, within CSW01_04255 at 887.803 kb on - strand, within CSW01_04255 at 887.806 kb on - strand, within CSW01_04255 at 887.814 kb on + strand, within CSW01_04255 at 887.822 kb on - strand, within CSW01_04255 at 887.822 kb on - strand, within CSW01_04255 at 887.822 kb on - strand, within CSW01_04255 at 887.858 kb on + strand, within CSW01_04255 at 887.895 kb on - strand, within CSW01_04255 at 887.895 kb on - strand, within CSW01_04255 at 887.895 kb on - strand, within CSW01_04255 at 888.079 kb on - strand, within CSW01_04255 at 888.080 kb on - strand, within CSW01_04255 at 888.105 kb on + strand, within CSW01_04255 at 888.105 kb on + strand, within CSW01_04255 at 888.113 kb on - strand, within CSW01_04255
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 884,282 - CSW01_04240 0.87 -0.4 884,282 - CSW01_04240 0.87 -0.5 884,282 - CSW01_04240 0.87 -1.1 884,319 + +0.2 884,319 + +0.5 884,337 - -1.1 884,339 - -0.5 884,477 + -0.2 884,477 + -0.6 884,485 - -0.6 884,576 - CSW01_04245 0.13 +0.1 884,585 + CSW01_04245 0.15 -0.1 884,593 - CSW01_04245 0.16 -0.4 884,593 - CSW01_04245 0.16 -0.2 884,593 - CSW01_04245 0.16 +0.1 884,593 - CSW01_04245 0.16 -0.8 884,593 - CSW01_04245 0.16 +0.3 884,613 - CSW01_04245 0.20 -0.4 884,613 - CSW01_04245 0.20 -0.4 884,740 + CSW01_04245 0.46 +0.1 884,740 + CSW01_04245 0.46 +0.5 884,743 - CSW01_04245 0.47 -0.1 884,748 - CSW01_04245 0.48 -0.6 884,748 - CSW01_04245 0.48 +0.6 884,761 + CSW01_04245 0.50 -0.9 884,761 + CSW01_04245 0.50 +0.2 884,761 + CSW01_04245 0.50 +0.5 884,766 + CSW01_04245 0.51 -1.0 884,769 - CSW01_04245 0.52 -1.3 884,769 - CSW01_04245 0.52 -0.6 884,769 - CSW01_04245 0.52 +0.5 884,784 + CSW01_04245 0.55 -0.7 884,784 + CSW01_04245 0.55 +1.0 884,784 + CSW01_04245 0.55 -1.5 884,784 + CSW01_04245 0.55 +0.3 884,786 + CSW01_04245 0.55 -0.7 884,789 + CSW01_04245 0.56 +0.2 884,789 + CSW01_04245 0.56 -0.4 884,792 - CSW01_04245 0.57 +1.2 884,792 - CSW01_04245 0.57 +0.5 884,792 - CSW01_04245 0.57 -0.9 884,792 - CSW01_04245 0.57 +1.1 884,792 - CSW01_04245 0.57 -1.5 884,794 + CSW01_04245 0.57 +1.0 884,797 - CSW01_04245 0.58 -0.6 884,804 - CSW01_04245 0.59 +0.3 884,819 - CSW01_04245 0.62 -0.0 884,819 - CSW01_04245 0.62 +0.4 884,849 - CSW01_04245 0.68 -2.0 884,849 - CSW01_04245 0.68 +0.3 884,861 + CSW01_04245 0.71 -0.2 884,861 + CSW01_04245 0.71 +0.0 884,869 - CSW01_04245 0.72 +0.2 884,906 - CSW01_04245 0.80 -0.2 884,928 - CSW01_04245 0.84 +0.5 884,928 - CSW01_04245 0.84 +0.5 884,933 - CSW01_04245 0.85 +0.2 885,076 + -0.5 885,077 - +0.2 885,084 - -0.1 885,085 + +0.1 885,092 - -0.1 885,093 - -0.6 885,093 - +0.0 885,093 - +0.1 885,093 - -0.3 885,093 - -0.0 885,119 + -0.8 885,119 - -0.4 885,127 - -0.4 885,147 - -1.0 885,198 + -0.9 885,198 + -0.1 885,201 + -0.2 885,201 + +0.6 885,201 + +0.3 885,201 + -0.2 885,201 + -0.4 885,201 + -0.2 885,201 + -0.3 885,201 + +0.1 885,201 + -0.4 885,201 + +0.3 885,201 - -0.2 885,201 - -0.2 885,201 - +0.7 885,208 + -0.1 885,208 + -0.2 885,209 - -0.4 885,209 - -0.5 885,209 - +0.4 885,209 - -0.1 885,212 + -0.4 885,217 - +0.2 885,256 + -0.0 885,256 + +0.1 885,262 - -0.3 885,264 - -0.3 885,264 - -0.3 885,264 - -0.1 885,264 - -1.8 885,264 - -0.5 885,264 - +0.2 885,346 - +0.1 885,356 - +0.5 885,370 - -0.8 885,465 + -0.6 885,470 + CSW01_04250 0.10 +0.6 885,480 + CSW01_04250 0.11 +0.2 885,480 - CSW01_04250 0.11 +0.1 885,518 + CSW01_04250 0.13 -0.3 885,526 - CSW01_04250 0.13 -0.5 885,536 + CSW01_04250 0.14 +0.1 885,575 + CSW01_04250 0.16 +0.5 885,575 + CSW01_04250 0.16 +1.0 885,575 + CSW01_04250 0.16 +0.4 885,583 - CSW01_04250 0.16 +0.3 885,583 - CSW01_04250 0.16 -0.3 885,583 - CSW01_04250 0.16 -0.1 885,596 - CSW01_04250 0.17 -0.3 885,596 - CSW01_04250 0.17 +0.3 885,612 + CSW01_04250 0.18 -0.2 885,668 + CSW01_04250 0.21 +0.2 885,668 + CSW01_04250 0.21 +0.2 885,676 - CSW01_04250 0.21 -0.4 885,684 - CSW01_04250 0.22 -0.0 885,713 + CSW01_04250 0.23 +0.0 885,714 + CSW01_04250 0.23 +0.8 885,714 + CSW01_04250 0.23 -0.5 885,714 + CSW01_04250 0.23 -0.2 885,714 + CSW01_04250 0.23 -0.2 885,714 + CSW01_04250 0.23 -0.3 885,714 + CSW01_04250 0.23 -0.2 885,716 + CSW01_04250 0.23 -0.1 885,719 - CSW01_04250 0.23 +0.6 885,722 - CSW01_04250 0.24 +0.5 885,722 - CSW01_04250 0.24 -0.2 885,722 - CSW01_04250 0.24 +0.1 885,724 - CSW01_04250 0.24 -0.8 885,724 - CSW01_04250 0.24 -1.1 885,741 - CSW01_04250 0.25 -0.1 885,943 + CSW01_04250 0.35 +0.4 885,943 + CSW01_04250 0.35 -0.7 885,943 + CSW01_04250 0.35 +0.0 885,950 + CSW01_04250 0.36 -0.1 885,950 + CSW01_04250 0.36 -0.9 885,950 + CSW01_04250 0.36 +0.1 885,951 - CSW01_04250 0.36 -0.1 885,951 - CSW01_04250 0.36 +1.1 885,951 - CSW01_04250 0.36 +0.5 885,951 - CSW01_04250 0.36 +0.8 885,951 - CSW01_04250 0.36 +0.5 885,957 + CSW01_04250 0.36 -0.4 885,958 - CSW01_04250 0.36 -0.4 885,958 - CSW01_04250 0.36 +0.2 885,965 - CSW01_04250 0.37 -0.2 885,988 + CSW01_04250 0.38 +0.2 885,996 - CSW01_04250 0.38 -0.4 886,009 + CSW01_04250 0.39 -1.7 886,012 - CSW01_04250 0.39 +1.0 886,021 + CSW01_04250 0.40 -0.1 886,021 + CSW01_04250 0.40 -0.9 886,027 - CSW01_04250 0.40 -0.8 886,031 + CSW01_04250 0.40 +0.7 886,031 + CSW01_04250 0.40 -0.4 886,039 - CSW01_04250 0.41 +0.1 886,039 - 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Or see this region's nucleotide sequence