Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04150 and CSW01_04155 are separated by 178 nucleotides CSW01_04155 and CSW01_04160 are separated by 246 nucleotides CSW01_04160 and CSW01_04165 are separated by 67 nucleotides CSW01_04165 and CSW01_04170 overlap by 29 nucleotides CSW01_04170 and CSW01_04175 are separated by 8 nucleotides
CSW01_04150: CSW01_04150 - RNA methyltransferase, at 858,004 to 858,777
_04150
CSW01_04155: CSW01_04155 - ferredoxin family protein, at 858,956 to 859,279
_04155
CSW01_04160: CSW01_04160 - NAD(P)/FAD-dependent oxidoreductase, at 859,526 to 861,142
_04160
CSW01_04165: CSW01_04165 - MFS transporter, at 861,210 to 861,893
_04165
CSW01_04170: CSW01_04170 - hypothetical protein, at 861,865 to 862,017
_04170
CSW01_04175: CSW01_04175 - SWIM zinc finger domain-containing protein, at 862,026 to 863,795
_04175
Position (kb) 859
860
861
862 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 858.581 kb on + strand, within CSW01_04150 at 858.588 kb on - strand, within CSW01_04150 at 858.590 kb on - strand, within CSW01_04150 at 858.655 kb on - strand, within CSW01_04150 at 858.672 kb on - strand, within CSW01_04150 at 858.692 kb on - strand, within CSW01_04150 at 858.720 kb on - strand at 858.902 kb on + strand at 858.902 kb on + strand at 858.902 kb on + strand at 858.935 kb on - strand at 859.036 kb on + strand, within CSW01_04155 at 859.044 kb on - strand, within CSW01_04155 at 859.155 kb on - strand, within CSW01_04155 at 859.188 kb on - strand, within CSW01_04155 at 859.230 kb on - strand, within CSW01_04155 at 859.230 kb on - strand, within CSW01_04155 at 859.315 kb on + strand at 859.315 kb on + strand at 859.315 kb on + strand at 859.315 kb on + strand at 859.315 kb on + strand at 859.321 kb on - strand at 859.321 kb on - strand at 859.321 kb on - strand at 859.321 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.423 kb on + strand at 859.494 kb on + strand at 859.504 kb on + strand at 859.512 kb on - strand at 859.542 kb on + strand at 859.579 kb on + strand at 859.579 kb on + strand at 859.587 kb on - strand at 859.587 kb on - strand at 859.587 kb on - strand at 859.587 kb on - strand at 859.637 kb on - strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.658 kb on - strand at 859.684 kb on + strand at 859.684 kb on + strand at 859.692 kb on - strand, within CSW01_04160 at 859.692 kb on - strand, within CSW01_04160 at 859.692 kb on - strand, within CSW01_04160 at 859.692 kb on - strand, within CSW01_04160 at 859.692 kb on - strand, within CSW01_04160 at 859.799 kb on + strand, within CSW01_04160 at 859.799 kb on + strand, within CSW01_04160 at 859.807 kb on - strand, within CSW01_04160 at 859.807 kb on - strand, within CSW01_04160 at 859.833 kb on + strand, within CSW01_04160 at 859.841 kb on - strand, within CSW01_04160 at 859.841 kb on - strand, within CSW01_04160 at 859.850 kb on - strand, within CSW01_04160 at 859.867 kb on - strand, within CSW01_04160 at 859.889 kb on - strand, within CSW01_04160 at 859.889 kb on - strand, within CSW01_04160 at 859.908 kb on + strand, within CSW01_04160 at 859.908 kb on + strand, within CSW01_04160 at 859.908 kb on + strand, within CSW01_04160 at 859.916 kb on - strand, within CSW01_04160 at 859.964 kb on - strand, within CSW01_04160 at 860.035 kb on - strand, within CSW01_04160 at 860.035 kb on - strand, within CSW01_04160 at 860.139 kb on + strand, within CSW01_04160 at 860.139 kb on + strand, within CSW01_04160 at 860.139 kb on - strand, within CSW01_04160 at 860.256 kb on + strand, within CSW01_04160 at 860.256 kb on + strand, within CSW01_04160 at 860.272 kb on - strand, within CSW01_04160 at 860.324 kb on + strand, within CSW01_04160 at 860.339 kb on - strand, within CSW01_04160 at 860.464 kb on - strand, within CSW01_04160 at 860.510 kb on + strand, within CSW01_04160 at 860.510 kb on + strand, within CSW01_04160 at 860.517 kb on + strand, within CSW01_04160 at 860.546 kb on - strand, within CSW01_04160 at 860.546 kb on - strand, within CSW01_04160 at 860.600 kb on - strand, within CSW01_04160 at 860.630 kb on + strand, within CSW01_04160 at 860.641 kb on + strand, within CSW01_04160 at 860.651 kb on + strand, within CSW01_04160 at 860.664 kb on - strand, within CSW01_04160 at 860.715 kb on + strand, within CSW01_04160 at 860.723 kb on - strand, within CSW01_04160 at 860.723 kb on - strand, within CSW01_04160 at 860.777 kb on + strand, within CSW01_04160 at 860.786 kb on - strand, within CSW01_04160 at 860.799 kb on + strand, within CSW01_04160 at 860.853 kb on - strand, within CSW01_04160 at 860.855 kb on + strand, within CSW01_04160 at 861.013 kb on + strand at 861.020 kb on + strand at 861.022 kb on + strand at 861.049 kb on - strand at 861.049 kb on - strand at 861.057 kb on + strand at 861.121 kb on + strand at 861.177 kb on - strand at 861.177 kb on - strand at 861.262 kb on + strand at 861.327 kb on + strand, within CSW01_04165 at 861.411 kb on + strand, within CSW01_04165 at 861.454 kb on + strand, within CSW01_04165 at 861.497 kb on - strand, within CSW01_04165 at 861.511 kb on + strand, within CSW01_04165 at 861.513 kb on + strand, within CSW01_04165 at 861.516 kb on - strand, within CSW01_04165 at 861.640 kb on + strand, within CSW01_04165 at 861.761 kb on + strand, within CSW01_04165 at 861.767 kb on + strand, within CSW01_04165 at 861.792 kb on + strand, within CSW01_04165 at 861.796 kb on + strand, within CSW01_04165 at 861.858 kb on - strand at 861.860 kb on + strand at 861.868 kb on - strand at 861.948 kb on - strand, within CSW01_04170 at 861.952 kb on - strand, within CSW01_04170 at 861.973 kb on + strand, within CSW01_04170 at 861.989 kb on + strand, within CSW01_04170 at 861.997 kb on - strand, within CSW01_04170 at 862.023 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 858,581 + CSW01_04150 0.75 -0.8 858,588 - CSW01_04150 0.75 +0.1 858,590 - CSW01_04150 0.76 -0.7 858,655 - CSW01_04150 0.84 -0.3 858,672 - CSW01_04150 0.86 -1.1 858,692 - CSW01_04150 0.89 -0.7 858,720 - -0.3 858,902 + -0.0 858,902 + -0.3 858,902 + +0.6 858,935 - +0.3 859,036 + CSW01_04155 0.25 -0.7 859,044 - CSW01_04155 0.27 -1.7 859,155 - CSW01_04155 0.61 +0.1 859,188 - CSW01_04155 0.72 +1.3 859,230 - CSW01_04155 0.85 -0.4 859,230 - CSW01_04155 0.85 +0.1 859,315 + +0.1 859,315 + +0.1 859,315 + +0.3 859,315 + +0.4 859,315 + -0.5 859,321 - -1.0 859,321 - -1.7 859,321 - -0.9 859,321 - +0.8 859,323 - +0.0 859,323 - -0.4 859,323 - -0.1 859,323 - -0.1 859,323 - +0.5 859,323 - -2.5 859,323 - +0.6 859,423 + -0.5 859,494 + +0.2 859,504 + -0.3 859,512 - +0.1 859,542 + -0.5 859,579 + -0.7 859,579 + -0.4 859,587 - +1.0 859,587 - +0.0 859,587 - +0.4 859,587 - -0.7 859,637 - +2.6 859,639 + -0.4 859,639 + +0.2 859,639 + -0.0 859,639 + -0.7 859,639 + -0.0 859,639 + +0.2 859,639 + -0.0 859,639 + -0.2 859,639 + +1.3 859,639 + -0.1 859,639 + +0.2 859,639 + +0.1 859,639 + +0.8 859,639 + -0.1 859,639 + -1.0 859,639 + -0.5 859,639 + -0.3 859,639 + +0.1 859,639 + -0.7 859,639 + +0.6 859,639 + +0.2 859,639 + -0.2 859,639 + +0.9 859,639 + +0.1 859,647 - -0.4 859,647 - +1.2 859,647 - +0.3 859,647 - +0.0 859,647 - -0.5 859,647 - -0.1 859,647 - +0.3 859,647 - -0.1 859,647 - +0.2 859,647 - +0.1 859,647 - -0.1 859,647 - +0.3 859,647 - +0.3 859,647 - +0.2 859,647 - +0.7 859,647 - +0.1 859,647 - -0.0 859,647 - -0.8 859,647 - +0.6 859,647 - +0.7 859,647 - -0.7 859,647 - +0.2 859,658 - +0.6 859,684 + -0.8 859,684 + +0.5 859,692 - CSW01_04160 0.10 +0.8 859,692 - CSW01_04160 0.10 -0.2 859,692 - CSW01_04160 0.10 +0.2 859,692 - CSW01_04160 0.10 +0.0 859,692 - CSW01_04160 0.10 +1.5 859,799 + CSW01_04160 0.17 -0.0 859,799 + CSW01_04160 0.17 +0.6 859,807 - CSW01_04160 0.17 -0.4 859,807 - CSW01_04160 0.17 +0.1 859,833 + CSW01_04160 0.19 +0.1 859,841 - CSW01_04160 0.19 -0.5 859,841 - CSW01_04160 0.19 -0.3 859,850 - CSW01_04160 0.20 +0.6 859,867 - CSW01_04160 0.21 -0.0 859,889 - CSW01_04160 0.22 +2.1 859,889 - CSW01_04160 0.22 +0.8 859,908 + CSW01_04160 0.24 -0.8 859,908 + CSW01_04160 0.24 -1.1 859,908 + CSW01_04160 0.24 -0.2 859,916 - CSW01_04160 0.24 -2.1 859,964 - CSW01_04160 0.27 +2.1 860,035 - CSW01_04160 0.31 +0.1 860,035 - CSW01_04160 0.31 +0.4 860,139 + CSW01_04160 0.38 +0.5 860,139 + CSW01_04160 0.38 +0.3 860,139 - CSW01_04160 0.38 -0.7 860,256 + CSW01_04160 0.45 -1.6 860,256 + CSW01_04160 0.45 +3.5 860,272 - CSW01_04160 0.46 +0.5 860,324 + CSW01_04160 0.49 -0.2 860,339 - CSW01_04160 0.50 +0.1 860,464 - CSW01_04160 0.58 +0.7 860,510 + CSW01_04160 0.61 -0.5 860,510 + CSW01_04160 0.61 +0.2 860,517 + CSW01_04160 0.61 -0.1 860,546 - CSW01_04160 0.63 -0.7 860,546 - CSW01_04160 0.63 -0.1 860,600 - CSW01_04160 0.66 -0.4 860,630 + CSW01_04160 0.68 +0.4 860,641 + CSW01_04160 0.69 -1.0 860,651 + CSW01_04160 0.70 +0.3 860,664 - CSW01_04160 0.70 +0.3 860,715 + CSW01_04160 0.74 -1.1 860,723 - CSW01_04160 0.74 +0.3 860,723 - CSW01_04160 0.74 -1.7 860,777 + CSW01_04160 0.77 +0.3 860,786 - CSW01_04160 0.78 +0.0 860,799 + CSW01_04160 0.79 -0.8 860,853 - CSW01_04160 0.82 -0.0 860,855 + CSW01_04160 0.82 -0.1 861,013 + -1.1 861,020 + +0.1 861,022 + -0.2 861,049 - -0.0 861,049 - -0.6 861,057 + +0.5 861,121 + +0.4 861,177 - -1.1 861,177 - +0.1 861,262 + +0.5 861,327 + CSW01_04165 0.17 -0.7 861,411 + CSW01_04165 0.29 +0.3 861,454 + CSW01_04165 0.36 +0.3 861,497 - CSW01_04165 0.42 +1.2 861,511 + CSW01_04165 0.44 -0.5 861,513 + CSW01_04165 0.44 +0.0 861,516 - CSW01_04165 0.45 -0.5 861,640 + CSW01_04165 0.63 -0.0 861,761 + CSW01_04165 0.81 -0.9 861,767 + CSW01_04165 0.81 +0.1 861,792 + CSW01_04165 0.85 +0.2 861,796 + CSW01_04165 0.86 -0.1 861,858 - -0.3 861,860 + +0.6 861,868 - -0.2 861,948 - CSW01_04170 0.54 -0.0 861,952 - CSW01_04170 0.57 +0.2 861,973 + CSW01_04170 0.71 -0.3 861,989 + CSW01_04170 0.81 -0.2 861,997 - CSW01_04170 0.86 -0.4 862,023 + +0.4
Or see this region's nucleotide sequence