Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03770

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03765 and CSW01_03770 overlap by 4 nucleotidesCSW01_03770 and CSW01_03775 are separated by 67 nucleotides CSW01_03765: CSW01_03765 - two-component system sensor histidine kinase PhoR, at 771,724 to 773,025 _03765 CSW01_03770: CSW01_03770 - phosphate ABC transporter substrate-binding protein, at 773,022 to 773,999 _03770 CSW01_03775: CSW01_03775 - exopolyphosphatase, at 774,067 to 775,638 _03775 Position (kb) 773 774Strain fitness (log2 ratio) -1 0 1 2 3at 772.049 kb on - strand, within CSW01_03765at 772.097 kb on - strand, within CSW01_03765at 772.136 kb on + strand, within CSW01_03765at 772.146 kb on + strand, within CSW01_03765at 772.269 kb on + strand, within CSW01_03765at 772.275 kb on + strand, within CSW01_03765at 772.282 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.291 kb on - strand, within CSW01_03765at 772.317 kb on + strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.372 kb on - strand, within CSW01_03765at 772.421 kb on + strand, within CSW01_03765at 772.446 kb on - strand, within CSW01_03765at 772.529 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.612 kb on - strand, within CSW01_03765at 772.666 kb on - strand, within CSW01_03765at 772.666 kb on - strand, within CSW01_03765at 772.735 kb on - strand, within CSW01_03765at 772.764 kb on + strand, within CSW01_03765at 772.828 kb on + strand, within CSW01_03765at 772.828 kb on + strand, within CSW01_03765at 772.836 kb on + strand, within CSW01_03765at 772.836 kb on - strand, within CSW01_03765at 772.838 kb on + strand, within CSW01_03765at 772.838 kb on + strand, within CSW01_03765at 772.872 kb on - strand, within CSW01_03765at 773.056 kb on + strandat 773.138 kb on - strand, within CSW01_03770at 773.184 kb on - strand, within CSW01_03770at 773.212 kb on + strand, within CSW01_03770at 773.215 kb on - strand, within CSW01_03770at 773.232 kb on + strand, within CSW01_03770at 773.240 kb on - strand, within CSW01_03770at 773.287 kb on + strand, within CSW01_03770at 773.340 kb on - strand, within CSW01_03770at 773.365 kb on - strand, within CSW01_03770at 773.464 kb on + strand, within CSW01_03770at 773.471 kb on - strand, within CSW01_03770at 773.473 kb on + strand, within CSW01_03770at 773.516 kb on + strand, within CSW01_03770at 773.525 kb on - strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.611 kb on - strand, within CSW01_03770at 773.695 kb on + strand, within CSW01_03770at 773.707 kb on + strand, within CSW01_03770at 773.761 kb on + strand, within CSW01_03770at 773.797 kb on - strand, within CSW01_03770at 773.815 kb on + strand, within CSW01_03770at 773.815 kb on + strand, within CSW01_03770at 773.823 kb on - strand, within CSW01_03770at 773.909 kb on - strandat 773.914 kb on - strandat 773.963 kb on - strandat 774.021 kb on + strandat 774.045 kb on + strandat 774.055 kb on + strandat 774.121 kb on - strandat 774.121 kb on - strandat 774.121 kb on - strandat 774.121 kb on - strandat 774.121 kb on - strandat 774.202 kb on + strandat 774.202 kb on + strandat 774.268 kb on + strand, within CSW01_03775at 774.300 kb on + strand, within CSW01_03775at 774.361 kb on + strand, within CSW01_03775at 774.382 kb on + strand, within CSW01_03775at 774.390 kb on - strand, within CSW01_03775at 774.390 kb on - strand, within CSW01_03775at 774.444 kb on + strand, within CSW01_03775at 774.456 kb on + strand, within CSW01_03775at 774.456 kb on + strand, within CSW01_03775at 774.459 kb on - strand, within CSW01_03775at 774.464 kb on + strand, within CSW01_03775at 774.464 kb on - strand, within CSW01_03775at 774.464 kb on - strand, within CSW01_03775at 774.501 kb on + strand, within CSW01_03775at 774.501 kb on + strand, within CSW01_03775at 774.501 kb on + strand, within CSW01_03775at 774.501 kb on + strand, within CSW01_03775at 774.509 kb on - strand, within CSW01_03775at 774.556 kb on + strand, within CSW01_03775at 774.564 kb on - strand, within CSW01_03775at 774.570 kb on - strand, within CSW01_03775at 774.582 kb on + strand, within CSW01_03775at 774.605 kb on - strand, within CSW01_03775at 774.678 kb on - strand, within CSW01_03775at 774.678 kb on - strand, within CSW01_03775at 774.678 kb on - strand, within CSW01_03775at 774.791 kb on - strand, within CSW01_03775at 774.807 kb on + strand, within CSW01_03775at 774.807 kb on + strand, within CSW01_03775at 774.855 kb on + strand, within CSW01_03775at 774.855 kb on + strand, within CSW01_03775at 774.862 kb on + strand, within CSW01_03775at 774.997 kb on + strand, within CSW01_03775

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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772,049 - CSW01_03765 0.25 -0.4
772,097 - CSW01_03765 0.29 +0.4
772,136 + CSW01_03765 0.32 +1.0
772,146 + CSW01_03765 0.32 +2.3
772,269 + CSW01_03765 0.42 +0.3
772,275 + CSW01_03765 0.42 +1.2
772,282 + CSW01_03765 0.43 -0.1
772,290 + CSW01_03765 0.43 +1.3
772,290 + CSW01_03765 0.43 +1.1
772,290 + CSW01_03765 0.43 +0.0
772,291 - CSW01_03765 0.44 +0.1
772,317 + CSW01_03765 0.46 +0.2
772,334 - CSW01_03765 0.47 +0.0
772,334 - CSW01_03765 0.47 +0.2
772,334 - CSW01_03765 0.47 +1.1
772,372 - CSW01_03765 0.50 +0.3
772,421 + CSW01_03765 0.54 -1.3
772,446 - CSW01_03765 0.55 -0.4
772,529 - CSW01_03765 0.62 +0.3
772,553 - CSW01_03765 0.64 -0.8
772,553 - CSW01_03765 0.64 -1.5
772,553 - CSW01_03765 0.64 -1.1
772,553 - CSW01_03765 0.64 -0.5
772,612 - CSW01_03765 0.68 +0.2
772,666 - CSW01_03765 0.72 -1.5
772,666 - CSW01_03765 0.72 -1.6
772,735 - CSW01_03765 0.78 +0.1
772,764 + CSW01_03765 0.80 +0.3
772,828 + CSW01_03765 0.85 +0.7
772,828 + CSW01_03765 0.85 +0.5
772,836 + CSW01_03765 0.85 +0.5
772,836 - CSW01_03765 0.85 +0.9
772,838 + CSW01_03765 0.86 -0.7
772,838 + CSW01_03765 0.86 -0.8
772,872 - CSW01_03765 0.88 +0.1
773,056 + -0.9
773,138 - CSW01_03770 0.12 -0.2
773,184 - CSW01_03770 0.17 +0.2
773,212 + CSW01_03770 0.19 +1.1
773,215 - CSW01_03770 0.20 +0.5
773,232 + CSW01_03770 0.21 +0.3
773,240 - CSW01_03770 0.22 +0.1
773,287 + CSW01_03770 0.27 -0.3
773,340 - CSW01_03770 0.33 -0.6
773,365 - CSW01_03770 0.35 -0.6
773,464 + CSW01_03770 0.45 +0.4
773,471 - CSW01_03770 0.46 +0.6
773,473 + CSW01_03770 0.46 +1.3
773,516 + CSW01_03770 0.51 -0.9
773,525 - CSW01_03770 0.51 -0.3
773,603 + CSW01_03770 0.59 +0.6
773,603 + CSW01_03770 0.59 +1.5
773,603 + CSW01_03770 0.59 -0.1
773,611 - CSW01_03770 0.60 +1.5
773,695 + CSW01_03770 0.69 +0.5
773,707 + CSW01_03770 0.70 +2.1
773,761 + CSW01_03770 0.76 +0.1
773,797 - CSW01_03770 0.79 -0.5
773,815 + CSW01_03770 0.81 +0.5
773,815 + CSW01_03770 0.81 +0.6
773,823 - CSW01_03770 0.82 -1.1
773,909 - +0.3
773,914 - +0.0
773,963 - +0.5
774,021 + +0.4
774,045 + +1.5
774,055 + +0.3
774,121 - -1.3
774,121 - -0.2
774,121 - +0.1
774,121 - +0.3
774,121 - +0.9
774,202 + +0.9
774,202 + +0.1
774,268 + CSW01_03775 0.13 +0.5
774,300 + CSW01_03775 0.15 +0.9
774,361 + CSW01_03775 0.19 +0.9
774,382 + CSW01_03775 0.20 -0.4
774,390 - CSW01_03775 0.21 +0.8
774,390 - CSW01_03775 0.21 +0.3
774,444 + CSW01_03775 0.24 +1.3
774,456 + CSW01_03775 0.25 +3.1
774,456 + CSW01_03775 0.25 -0.6
774,459 - CSW01_03775 0.25 +0.2
774,464 + CSW01_03775 0.25 -0.0
774,464 - CSW01_03775 0.25 +0.5
774,464 - CSW01_03775 0.25 +0.4
774,501 + CSW01_03775 0.28 -0.2
774,501 + CSW01_03775 0.28 +0.4
774,501 + CSW01_03775 0.28 -0.1
774,501 + CSW01_03775 0.28 +0.4
774,509 - CSW01_03775 0.28 +0.8
774,556 + CSW01_03775 0.31 +1.0
774,564 - CSW01_03775 0.32 +0.5
774,570 - CSW01_03775 0.32 +1.9
774,582 + CSW01_03775 0.33 +0.5
774,605 - CSW01_03775 0.34 -0.8
774,678 - CSW01_03775 0.39 +0.2
774,678 - CSW01_03775 0.39 +1.6
774,678 - CSW01_03775 0.39 +0.6
774,791 - CSW01_03775 0.46 +1.8
774,807 + CSW01_03775 0.47 +0.7
774,807 + CSW01_03775 0.47 -0.1
774,855 + CSW01_03775 0.50 +0.3
774,855 + CSW01_03775 0.50 +0.5
774,862 + CSW01_03775 0.51 -0.0
774,997 + CSW01_03775 0.59 +0.2

Or see this region's nucleotide sequence