Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02890

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02885 and CSW01_02890 are separated by 203 nucleotidesCSW01_02890 and CSW01_02895 are separated by 91 nucleotidesCSW01_02895 and CSW01_02900 are separated by 181 nucleotidesCSW01_02900 and CSW01_02905 are separated by 33 nucleotidesCSW01_02905 and CSW01_02910 are separated by 22 nucleotidesCSW01_02910 and CSW01_02915 are separated by 66 nucleotidesCSW01_02915 and CSW01_02920 are separated by 55 nucleotides CSW01_02885: CSW01_02885 - alanine--tRNA ligase, at 575,265 to 577,847 _02885 CSW01_02890: CSW01_02890 - aspartate kinase, at 578,051 to 579,238 _02890 CSW01_02895: CSW01_02895 - carbon storage regulator, at 579,330 to 579,527 _02895 CSW01_02900: CSW01_02900 - tRNA-Ser, at 579,709 to 579,801 _02900 CSW01_02905: CSW01_02905 - tRNA-Arg, at 579,835 to 579,911 _02905 CSW01_02910: CSW01_02910 - tRNA-Ser, at 579,934 to 580,026 _02910 CSW01_02915: CSW01_02915 - tRNA-Arg, at 580,093 to 580,169 _02915 CSW01_02920: CSW01_02920 - tRNA-Arg, at 580,225 to 580,301 _02920 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1at 577.924 kb on - strandat 577.974 kb on + strandat 578.105 kb on - strandat 578.148 kb on - strandat 578.168 kb on + strandat 578.268 kb on + strand, within CSW01_02890at 578.268 kb on + strand, within CSW01_02890at 578.268 kb on + strand, within CSW01_02890at 578.273 kb on + strand, within CSW01_02890at 578.276 kb on + strand, within CSW01_02890at 578.301 kb on + strand, within CSW01_02890at 578.495 kb on + strand, within CSW01_02890at 578.495 kb on + strand, within CSW01_02890at 578.503 kb on - strand, within CSW01_02890at 578.518 kb on + strand, within CSW01_02890at 578.518 kb on + strand, within CSW01_02890at 578.518 kb on + strand, within CSW01_02890at 578.528 kb on + strand, within CSW01_02890at 578.551 kb on - strand, within CSW01_02890at 578.586 kb on + strand, within CSW01_02890at 578.594 kb on - strand, within CSW01_02890at 578.595 kb on + strand, within CSW01_02890at 578.595 kb on - strand, within CSW01_02890at 578.603 kb on - strand, within CSW01_02890at 578.619 kb on + strand, within CSW01_02890at 578.630 kb on - strand, within CSW01_02890at 578.684 kb on + strand, within CSW01_02890at 578.684 kb on + strand, within CSW01_02890at 578.692 kb on + strand, within CSW01_02890at 578.719 kb on - strand, within CSW01_02890at 578.719 kb on - strand, within CSW01_02890at 578.726 kb on + strand, within CSW01_02890at 578.809 kb on - strand, within CSW01_02890at 578.868 kb on + strand, within CSW01_02890at 578.892 kb on + strand, within CSW01_02890at 578.892 kb on + strand, within CSW01_02890at 578.892 kb on + strand, within CSW01_02890at 578.892 kb on + strand, within CSW01_02890at 578.900 kb on - strand, within CSW01_02890at 578.900 kb on - strand, within CSW01_02890at 578.900 kb on - strand, within CSW01_02890at 578.900 kb on - strand, within CSW01_02890at 578.918 kb on - strand, within CSW01_02890at 578.918 kb on - strand, within CSW01_02890at 578.954 kb on - strand, within CSW01_02890at 579.062 kb on + strand, within CSW01_02890at 579.062 kb on + strand, within CSW01_02890at 579.062 kb on + strand, within CSW01_02890at 579.062 kb on + strand, within CSW01_02890at 579.062 kb on + strand, within CSW01_02890at 579.062 kb on + strand, within CSW01_02890at 579.062 kb on + strand, within CSW01_02890at 579.062 kb on + strand, within CSW01_02890at 579.070 kb on - strand, within CSW01_02890at 579.070 kb on - strand, within CSW01_02890at 579.070 kb on - strand, within CSW01_02890at 579.070 kb on - strand, within CSW01_02890at 579.070 kb on - strand, within CSW01_02890at 579.139 kb on - strandat 579.140 kb on - strandat 579.141 kb on - strandat 579.177 kb on + strandat 579.185 kb on - strandat 579.246 kb on + strandat 579.313 kb on + strandat 579.503 kb on - strand, within CSW01_02895

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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577,924 - -0.8
577,974 + -1.3
578,105 - -2.3
578,148 - -2.8
578,168 + -0.0
578,268 + CSW01_02890 0.18 -1.4
578,268 + CSW01_02890 0.18 -1.4
578,268 + CSW01_02890 0.18 -2.6
578,273 + CSW01_02890 0.19 -2.6
578,276 + CSW01_02890 0.19 -1.2
578,301 + CSW01_02890 0.21 -2.7
578,495 + CSW01_02890 0.37 -1.9
578,495 + CSW01_02890 0.37 -2.6
578,503 - CSW01_02890 0.38 -2.9
578,518 + CSW01_02890 0.39 -2.5
578,518 + CSW01_02890 0.39 -1.0
578,518 + CSW01_02890 0.39 -2.0
578,528 + CSW01_02890 0.40 -2.8
578,551 - CSW01_02890 0.42 -2.0
578,586 + CSW01_02890 0.45 -1.4
578,594 - CSW01_02890 0.46 -2.2
578,595 + CSW01_02890 0.46 -1.8
578,595 - CSW01_02890 0.46 -2.2
578,603 - CSW01_02890 0.46 -3.0
578,619 + CSW01_02890 0.48 -0.9
578,630 - CSW01_02890 0.49 -1.5
578,684 + CSW01_02890 0.53 -1.0
578,684 + CSW01_02890 0.53 -1.4
578,692 + CSW01_02890 0.54 -0.0
578,719 - CSW01_02890 0.56 -0.7
578,719 - CSW01_02890 0.56 +1.1
578,726 + CSW01_02890 0.57 +0.1
578,809 - CSW01_02890 0.64 -2.2
578,868 + CSW01_02890 0.69 -1.9
578,892 + CSW01_02890 0.71 +0.2
578,892 + CSW01_02890 0.71 -1.4
578,892 + CSW01_02890 0.71 -0.8
578,892 + CSW01_02890 0.71 -2.7
578,900 - CSW01_02890 0.71 -3.2
578,900 - CSW01_02890 0.71 +0.6
578,900 - CSW01_02890 0.71 -2.0
578,900 - CSW01_02890 0.71 -0.8
578,918 - CSW01_02890 0.73 -1.6
578,918 - CSW01_02890 0.73 -2.1
578,954 - CSW01_02890 0.76 -2.2
579,062 + CSW01_02890 0.85 -1.8
579,062 + CSW01_02890 0.85 -2.1
579,062 + CSW01_02890 0.85 -2.0
579,062 + CSW01_02890 0.85 -3.5
579,062 + CSW01_02890 0.85 -3.0
579,062 + CSW01_02890 0.85 -1.3
579,062 + CSW01_02890 0.85 -1.0
579,062 + CSW01_02890 0.85 -1.4
579,070 - CSW01_02890 0.86 -2.0
579,070 - CSW01_02890 0.86 -2.2
579,070 - CSW01_02890 0.86 -1.0
579,070 - CSW01_02890 0.86 -2.7
579,070 - CSW01_02890 0.86 -0.9
579,139 - -1.1
579,140 - -1.0
579,141 - -0.7
579,177 + -0.5
579,185 - -1.3
579,246 + +1.3
579,313 + +0.6
579,503 - CSW01_02895 0.87 -1.4

Or see this region's nucleotide sequence