Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02695 and CSW01_02700 overlap by 10 nucleotides CSW01_02700 and CSW01_02705 are separated by 404 nucleotides CSW01_02705 and CSW01_02710 are separated by 496 nucleotides
CSW01_02695: CSW01_02695 - DUF2787 domain-containing protein, at 537,837 to 538,280
_02695
CSW01_02700: CSW01_02700 - hypothetical protein, at 538,271 to 538,744
_02700
CSW01_02705: CSW01_02705 - transposase, at 539,149 to 539,561
_02705
CSW01_02710: CSW01_02710 - chemotaxis protein, at 540,058 to 541,647
_02710
Position (kb) 539
540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 538.255 kb on + strand at 538.255 kb on + strand at 538.255 kb on + strand at 538.263 kb on - strand at 538.263 kb on - strand at 538.263 kb on - strand at 538.263 kb on - strand at 538.278 kb on - strand at 538.312 kb on - strand at 538.312 kb on - strand at 538.318 kb on + strand at 538.322 kb on - strand, within CSW01_02700 at 538.398 kb on + strand, within CSW01_02700 at 538.446 kb on - strand, within CSW01_02700 at 538.483 kb on + strand, within CSW01_02700 at 538.483 kb on + strand, within CSW01_02700 at 538.483 kb on + strand, within CSW01_02700 at 538.509 kb on - strand, within CSW01_02700 at 538.517 kb on - strand, within CSW01_02700 at 538.565 kb on + strand, within CSW01_02700 at 538.565 kb on + strand, within CSW01_02700 at 538.565 kb on + strand, within CSW01_02700 at 538.573 kb on - strand, within CSW01_02700 at 538.579 kb on - strand, within CSW01_02700 at 538.579 kb on - strand, within CSW01_02700 at 538.589 kb on + strand, within CSW01_02700 at 538.631 kb on + strand, within CSW01_02700 at 538.631 kb on + strand, within CSW01_02700 at 538.631 kb on + strand, within CSW01_02700 at 538.631 kb on + strand, within CSW01_02700 at 538.636 kb on + strand, within CSW01_02700 at 538.639 kb on - strand, within CSW01_02700 at 538.639 kb on - strand, within CSW01_02700 at 538.639 kb on - strand, within CSW01_02700 at 538.690 kb on - strand, within CSW01_02700 at 538.772 kb on + strand at 538.899 kb on + strand at 538.985 kb on - strand at 538.985 kb on - strand at 538.985 kb on - strand at 538.985 kb on - strand at 538.991 kb on + strand at 538.999 kb on - strand at 538.999 kb on - strand at 539.000 kb on - strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.067 kb on + strand at 539.071 kb on - strand at 539.075 kb on - strand at 539.075 kb on - strand at 539.075 kb on - strand at 539.075 kb on - strand at 539.075 kb on - strand at 539.089 kb on + strand at 539.104 kb on - strand at 539.167 kb on - strand at 539.178 kb on - strand at 539.183 kb on - strand at 539.252 kb on + strand, within CSW01_02705 at 539.254 kb on + strand, within CSW01_02705 at 539.270 kb on - strand, within CSW01_02705 at 539.278 kb on + strand, within CSW01_02705 at 539.335 kb on + strand, within CSW01_02705 at 539.343 kb on - strand, within CSW01_02705 at 539.364 kb on - strand, within CSW01_02705 at 539.364 kb on - strand, within CSW01_02705 at 539.364 kb on - strand, within CSW01_02705 at 539.364 kb on - strand, within CSW01_02705 at 539.370 kb on + strand, within CSW01_02705 at 539.392 kb on - strand, within CSW01_02705 at 539.414 kb on + strand, within CSW01_02705 at 539.430 kb on + strand, within CSW01_02705 at 539.438 kb on - strand, within CSW01_02705 at 539.458 kb on - strand, within CSW01_02705 at 539.460 kb on + strand, within CSW01_02705 at 539.460 kb on + strand, within CSW01_02705 at 539.460 kb on + strand, within CSW01_02705 at 539.468 kb on - strand, within CSW01_02705 at 539.474 kb on - strand, within CSW01_02705 at 539.504 kb on + strand, within CSW01_02705 at 539.553 kb on + strand at 539.553 kb on + strand at 539.567 kb on - strand at 539.592 kb on - strand at 539.632 kb on + strand at 539.643 kb on + strand at 539.643 kb on + strand at 539.643 kb on + strand at 539.675 kb on + strand at 539.680 kb on + strand at 539.768 kb on + strand at 539.769 kb on + strand at 539.791 kb on - strand at 539.791 kb on - strand at 539.811 kb on + strand at 539.811 kb on + strand at 539.814 kb on + strand at 539.819 kb on - strand at 539.821 kb on + strand at 539.834 kb on + strand at 539.844 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.003 kb on + strand at 540.007 kb on + strand at 540.011 kb on - strand at 540.011 kb on - strand at 540.011 kb on - strand at 540.015 kb on - strand at 540.015 kb on - strand at 540.046 kb on + strand at 540.073 kb on - strand at 540.094 kb on + strand at 540.127 kb on - strand at 540.162 kb on - strand at 540.204 kb on + strand at 540.210 kb on + strand at 540.211 kb on - strand at 540.217 kb on + strand, within CSW01_02710 at 540.218 kb on - strand, within CSW01_02710 at 540.218 kb on - strand, within CSW01_02710 at 540.220 kb on - strand, within CSW01_02710 at 540.228 kb on - strand, within CSW01_02710 at 540.247 kb on + strand, within CSW01_02710 at 540.247 kb on + strand, within CSW01_02710 at 540.250 kb on - strand, within CSW01_02710 at 540.255 kb on - strand, within CSW01_02710 at 540.255 kb on - strand, within CSW01_02710 at 540.255 kb on - strand, within CSW01_02710 at 540.255 kb on - strand, within CSW01_02710 at 540.345 kb on + strand, within CSW01_02710 at 540.353 kb on - strand, within CSW01_02710 at 540.353 kb on - strand, within CSW01_02710 at 540.364 kb on + strand, within CSW01_02710 at 540.375 kb on - strand, within CSW01_02710 at 540.399 kb on + strand, within CSW01_02710 at 540.399 kb on + strand, within CSW01_02710 at 540.409 kb on + strand, within CSW01_02710 at 540.413 kb on + strand, within CSW01_02710 at 540.414 kb on + strand, within CSW01_02710 at 540.419 kb on + strand, within CSW01_02710 at 540.422 kb on - strand, within CSW01_02710 at 540.431 kb on + strand, within CSW01_02710 at 540.432 kb on - strand, within CSW01_02710 at 540.540 kb on - strand, within CSW01_02710 at 540.544 kb on - strand, within CSW01_02710 at 540.544 kb on - strand, within CSW01_02710 at 540.545 kb on - strand, within CSW01_02710
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 538,255 + +0.6 538,255 + +0.2 538,255 + -1.8 538,263 - +0.1 538,263 - +0.2 538,263 - -0.7 538,263 - -0.6 538,278 - +0.3 538,312 - -1.1 538,312 - +0.2 538,318 + -0.2 538,322 - CSW01_02700 0.11 -0.3 538,398 + CSW01_02700 0.27 -0.8 538,446 - CSW01_02700 0.37 +1.6 538,483 + CSW01_02700 0.45 +0.1 538,483 + CSW01_02700 0.45 -0.1 538,483 + CSW01_02700 0.45 +0.2 538,509 - CSW01_02700 0.50 +0.2 538,517 - CSW01_02700 0.52 -0.2 538,565 + CSW01_02700 0.62 +0.6 538,565 + CSW01_02700 0.62 +0.3 538,565 + CSW01_02700 0.62 -0.3 538,573 - CSW01_02700 0.64 -0.5 538,579 - CSW01_02700 0.65 +0.2 538,579 - CSW01_02700 0.65 +0.3 538,589 + CSW01_02700 0.67 +0.8 538,631 + CSW01_02700 0.76 +0.1 538,631 + CSW01_02700 0.76 +1.1 538,631 + CSW01_02700 0.76 -0.4 538,631 + CSW01_02700 0.76 -0.2 538,636 + CSW01_02700 0.77 -0.2 538,639 - CSW01_02700 0.78 +0.1 538,639 - CSW01_02700 0.78 +0.3 538,639 - CSW01_02700 0.78 +0.1 538,690 - CSW01_02700 0.88 +0.1 538,772 + -0.0 538,899 + +0.2 538,985 - -0.5 538,985 - +1.0 538,985 - -0.1 538,985 - -0.2 538,991 + -0.3 538,999 - +0.0 538,999 - +0.2 539,000 - -0.0 539,067 + +0.9 539,067 + +0.5 539,067 + +0.4 539,067 + -0.5 539,067 + -0.2 539,067 + +0.1 539,067 + -0.3 539,067 + +0.4 539,067 + +0.0 539,067 + +0.1 539,071 - -0.0 539,075 - +0.6 539,075 - -0.4 539,075 - +0.3 539,075 - -0.1 539,075 - -0.1 539,089 + -0.8 539,104 - +0.6 539,167 - -0.5 539,178 - +0.0 539,183 - +1.4 539,252 + CSW01_02705 0.25 +0.8 539,254 + CSW01_02705 0.25 -0.0 539,270 - CSW01_02705 0.29 +0.3 539,278 + CSW01_02705 0.31 +0.0 539,335 + CSW01_02705 0.45 -0.1 539,343 - CSW01_02705 0.47 +0.7 539,364 - CSW01_02705 0.52 -0.0 539,364 - CSW01_02705 0.52 -0.4 539,364 - CSW01_02705 0.52 -1.4 539,364 - CSW01_02705 0.52 +0.1 539,370 + CSW01_02705 0.54 +1.0 539,392 - CSW01_02705 0.59 -0.6 539,414 + CSW01_02705 0.64 -0.7 539,430 + CSW01_02705 0.68 +0.4 539,438 - CSW01_02705 0.70 -0.5 539,458 - CSW01_02705 0.75 -0.9 539,460 + CSW01_02705 0.75 +0.7 539,460 + CSW01_02705 0.75 +0.5 539,460 + CSW01_02705 0.75 +0.4 539,468 - CSW01_02705 0.77 -2.2 539,474 - CSW01_02705 0.79 -0.7 539,504 + CSW01_02705 0.86 -0.5 539,553 + -0.2 539,553 + -0.1 539,567 - +2.2 539,592 - -1.3 539,632 + +0.3 539,643 + +0.5 539,643 + -0.1 539,643 + +0.3 539,675 + +1.4 539,680 + +0.6 539,768 + -0.4 539,769 + -0.0 539,791 - +0.2 539,791 - +0.5 539,811 + -0.1 539,811 + +0.0 539,814 + +0.2 539,819 - +0.4 539,821 + -0.1 539,834 + +0.7 539,844 + +0.7 540,003 + +0.0 540,003 + -0.2 540,003 + +0.3 540,003 + +0.4 540,003 + -0.7 540,003 + +0.5 540,007 + +0.6 540,011 - +0.4 540,011 - -0.2 540,011 - +0.3 540,015 - +0.6 540,015 - +0.7 540,046 + -0.3 540,073 - -1.0 540,094 + -0.2 540,127 - -0.8 540,162 - +0.6 540,204 + -0.3 540,210 + +0.7 540,211 - -0.1 540,217 + CSW01_02710 0.10 -0.3 540,218 - CSW01_02710 0.10 +0.4 540,218 - CSW01_02710 0.10 -0.3 540,220 - CSW01_02710 0.10 -0.3 540,228 - CSW01_02710 0.11 -0.3 540,247 + CSW01_02710 0.12 +0.3 540,247 + CSW01_02710 0.12 -0.2 540,250 - CSW01_02710 0.12 -0.1 540,255 - CSW01_02710 0.12 -0.3 540,255 - CSW01_02710 0.12 +0.6 540,255 - CSW01_02710 0.12 -0.2 540,255 - CSW01_02710 0.12 +0.3 540,345 + CSW01_02710 0.18 +0.6 540,353 - CSW01_02710 0.19 -0.4 540,353 - CSW01_02710 0.19 -0.7 540,364 + CSW01_02710 0.19 -0.0 540,375 - CSW01_02710 0.20 +0.2 540,399 + CSW01_02710 0.21 +0.5 540,399 + CSW01_02710 0.21 +1.2 540,409 + CSW01_02710 0.22 -0.1 540,413 + CSW01_02710 0.22 -0.2 540,414 + CSW01_02710 0.22 -0.8 540,419 + CSW01_02710 0.23 +0.1 540,422 - CSW01_02710 0.23 -0.0 540,431 + CSW01_02710 0.23 +0.2 540,432 - CSW01_02710 0.24 -0.0 540,540 - CSW01_02710 0.30 +0.1 540,544 - CSW01_02710 0.31 +0.3 540,544 - CSW01_02710 0.31 -0.0 540,545 - CSW01_02710 0.31 -0.3
Or see this region's nucleotide sequence