Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02520 and CSW01_02525 are separated by 144 nucleotides CSW01_02525 and CSW01_02530 are separated by 151 nucleotides
CSW01_02520: CSW01_02520 - iron-regulated virulence regulatory protein IrgB, at 502,501 to 503,397
_02520
CSW01_02525: CSW01_02525 - iron-regulated outer membrane virulence protein, at 503,542 to 505,500
_02525
CSW01_02530: CSW01_02530 - D-erythrose-4-phosphate dehydrogenase, at 505,652 to 506,677
_02530
Position (kb) 503
504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.554 kb on + strand at 502.571 kb on - strand at 502.578 kb on + strand at 502.586 kb on - strand at 502.586 kb on - strand at 502.586 kb on - strand at 502.586 kb on - strand at 502.629 kb on + strand, within CSW01_02520 at 502.629 kb on + strand, within CSW01_02520 at 502.637 kb on - strand, within CSW01_02520 at 502.637 kb on - strand, within CSW01_02520 at 502.647 kb on - strand, within CSW01_02520 at 502.671 kb on + strand, within CSW01_02520 at 502.686 kb on + strand, within CSW01_02520 at 502.699 kb on + strand, within CSW01_02520 at 502.700 kb on + strand, within CSW01_02520 at 502.731 kb on + strand, within CSW01_02520 at 502.751 kb on - strand, within CSW01_02520 at 502.753 kb on + strand, within CSW01_02520 at 502.757 kb on + strand, within CSW01_02520 at 502.758 kb on - strand, within CSW01_02520 at 502.775 kb on + strand, within CSW01_02520 at 502.775 kb on - strand, within CSW01_02520 at 502.859 kb on - strand, within CSW01_02520 at 502.900 kb on + strand, within CSW01_02520 at 502.924 kb on + strand, within CSW01_02520 at 502.932 kb on - strand, within CSW01_02520 at 502.932 kb on - strand, within CSW01_02520 at 502.953 kb on - strand, within CSW01_02520 at 502.993 kb on + strand, within CSW01_02520 at 503.001 kb on - strand, within CSW01_02520 at 503.052 kb on + strand, within CSW01_02520 at 503.052 kb on + strand, within CSW01_02520 at 503.060 kb on - strand, within CSW01_02520 at 503.067 kb on + strand, within CSW01_02520 at 503.067 kb on + strand, within CSW01_02520 at 503.067 kb on + strand, within CSW01_02520 at 503.075 kb on - strand, within CSW01_02520 at 503.075 kb on - strand, within CSW01_02520 at 503.075 kb on - strand, within CSW01_02520 at 503.075 kb on - strand, within CSW01_02520 at 503.187 kb on + strand, within CSW01_02520 at 503.187 kb on + strand, within CSW01_02520 at 503.187 kb on + strand, within CSW01_02520 at 503.224 kb on - strand, within CSW01_02520 at 503.257 kb on + strand, within CSW01_02520 at 503.257 kb on + strand, within CSW01_02520 at 503.265 kb on - strand, within CSW01_02520 at 503.301 kb on + strand, within CSW01_02520 at 503.301 kb on + strand, within CSW01_02520 at 503.305 kb on + strand, within CSW01_02520 at 503.306 kb on + strand, within CSW01_02520 at 503.306 kb on + strand, within CSW01_02520 at 503.306 kb on + strand, within CSW01_02520 at 503.306 kb on + strand, within CSW01_02520 at 503.306 kb on + strand, within CSW01_02520 at 503.306 kb on + strand, within CSW01_02520 at 503.306 kb on + strand, within CSW01_02520 at 503.306 kb on + strand, within CSW01_02520 at 503.314 kb on - strand at 503.314 kb on - strand at 503.314 kb on - strand at 503.314 kb on - strand at 503.314 kb on - strand at 503.314 kb on - strand at 503.314 kb on - strand at 503.316 kb on + strand at 503.316 kb on + strand at 503.324 kb on - strand at 503.352 kb on - strand at 503.372 kb on + strand at 503.457 kb on - strand at 503.457 kb on - strand at 503.544 kb on + strand at 503.549 kb on + strand at 503.557 kb on - strand at 503.590 kb on - strand at 503.635 kb on + strand at 503.649 kb on + strand at 503.696 kb on + strand at 503.706 kb on + strand at 503.738 kb on + strand, within CSW01_02525 at 503.746 kb on - strand, within CSW01_02525 at 503.820 kb on + strand, within CSW01_02525 at 503.835 kb on - strand, within CSW01_02525 at 503.835 kb on - strand, within CSW01_02525 at 503.847 kb on - strand, within CSW01_02525 at 503.862 kb on + strand, within CSW01_02525 at 503.875 kb on + strand, within CSW01_02525 at 503.875 kb on + strand, within CSW01_02525 at 503.875 kb on + strand, within CSW01_02525 at 503.875 kb on + strand, within CSW01_02525 at 503.875 kb on + strand, within CSW01_02525 at 503.875 kb on + strand, within CSW01_02525 at 503.883 kb on - strand, within CSW01_02525 at 503.883 kb on - strand, within CSW01_02525 at 503.883 kb on - strand, within CSW01_02525 at 503.883 kb on - strand, within CSW01_02525 at 503.883 kb on - strand, within CSW01_02525 at 503.883 kb on - strand, within CSW01_02525 at 503.883 kb on - strand, within CSW01_02525 at 503.892 kb on - strand, within CSW01_02525 at 503.919 kb on - strand, within CSW01_02525 at 503.995 kb on - strand, within CSW01_02525 at 503.995 kb on - strand, within CSW01_02525 at 503.995 kb on - strand, within CSW01_02525 at 504.034 kb on + strand, within CSW01_02525 at 504.039 kb on - strand, within CSW01_02525 at 504.233 kb on + strand, within CSW01_02525 at 504.233 kb on + strand, within CSW01_02525 at 504.235 kb on - strand, within CSW01_02525 at 504.235 kb on - strand, within CSW01_02525 at 504.235 kb on - strand, within CSW01_02525 at 504.235 kb on - strand, within CSW01_02525 at 504.248 kb on - strand, within CSW01_02525 at 504.252 kb on + strand, within CSW01_02525 at 504.252 kb on + strand, within CSW01_02525 at 504.295 kb on + strand, within CSW01_02525 at 504.295 kb on + strand, within CSW01_02525 at 504.303 kb on - strand, within CSW01_02525 at 504.326 kb on - strand, within CSW01_02525 at 504.333 kb on + strand, within CSW01_02525 at 504.422 kb on + strand, within CSW01_02525 at 504.422 kb on + strand, within CSW01_02525 at 504.432 kb on + strand, within CSW01_02525 at 504.432 kb on + strand, within CSW01_02525 at 504.432 kb on + strand, within CSW01_02525 at 504.440 kb on - strand, within CSW01_02525 at 504.440 kb on - strand, within CSW01_02525 at 504.490 kb on + strand, within CSW01_02525 at 504.501 kb on + strand, within CSW01_02525 at 504.509 kb on - strand, within CSW01_02525 at 504.509 kb on - strand, within CSW01_02525 at 504.579 kb on + strand, within CSW01_02525 at 504.632 kb on - strand, within CSW01_02525 at 504.721 kb on + strand, within CSW01_02525 at 504.731 kb on + strand, within CSW01_02525 at 504.736 kb on + strand, within CSW01_02525 at 504.740 kb on + strand, within CSW01_02525 at 504.771 kb on - strand, within CSW01_02525 at 504.783 kb on - strand, within CSW01_02525 at 504.787 kb on - strand, within CSW01_02525 at 504.843 kb on + strand, within CSW01_02525 at 504.869 kb on - strand, within CSW01_02525 at 504.879 kb on + strand, within CSW01_02525 at 504.887 kb on - strand, within CSW01_02525 at 504.900 kb on - strand, within CSW01_02525 at 504.929 kb on - strand, within CSW01_02525 at 504.929 kb on - strand, within CSW01_02525 at 504.931 kb on + strand, within CSW01_02525 at 504.937 kb on + strand, within CSW01_02525 at 505.099 kb on + strand, within CSW01_02525 at 505.099 kb on + strand, within CSW01_02525 at 505.124 kb on + strand, within CSW01_02525 at 505.160 kb on - strand, within CSW01_02525 at 505.160 kb on - strand, within CSW01_02525 at 505.213 kb on + strand, within CSW01_02525 at 505.262 kb on - strand, within CSW01_02525 at 505.262 kb on - strand, within CSW01_02525 at 505.339 kb on + strand at 505.360 kb on + strand at 505.368 kb on - strand at 505.392 kb on + strand at 505.392 kb on + strand at 505.400 kb on - strand at 505.400 kb on - strand at 505.400 kb on - strand at 505.400 kb on - strand at 505.400 kb on - strand at 505.400 kb on - strand at 505.413 kb on - strand at 505.413 kb on - strand at 505.413 kb on - strand at 505.441 kb on + strand at 505.441 kb on + strand at 505.441 kb on + strand at 505.441 kb on + strand at 505.441 kb on + strand at 505.441 kb on + strand at 505.441 kb on + strand at 505.441 kb on + strand at 505.441 kb on + strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.449 kb on - strand at 505.480 kb on + strand at 505.517 kb on - strand at 505.518 kb on - strand at 505.518 kb on - strand at 505.518 kb on - strand at 505.581 kb on + strand at 505.605 kb on - strand at 505.612 kb on - strand at 505.652 kb on + strand at 505.659 kb on + strand at 505.659 kb on + strand at 505.688 kb on - strand at 505.709 kb on + strand at 505.709 kb on + strand at 505.709 kb on + strand at 505.719 kb on - strand at 505.770 kb on - strand, within CSW01_02530 at 505.849 kb on + strand, within CSW01_02530 at 505.957 kb on - strand, within CSW01_02530 at 505.959 kb on + strand, within CSW01_02530 at 505.959 kb on + strand, within CSW01_02530 at 505.962 kb on - strand, within CSW01_02530 at 505.964 kb on + strand, within CSW01_02530 at 505.967 kb on - strand, within CSW01_02530 at 505.972 kb on - strand, within CSW01_02530 at 505.975 kb on - strand, within CSW01_02530 at 505.997 kb on - strand, within CSW01_02530 at 506.089 kb on + strand, within CSW01_02530 at 506.097 kb on - strand, within CSW01_02530 at 506.101 kb on + strand, within CSW01_02530 at 506.139 kb on + strand, within CSW01_02530 at 506.159 kb on + strand, within CSW01_02530 at 506.167 kb on - strand, within CSW01_02530 at 506.399 kb on + strand, within CSW01_02530 at 506.483 kb on - strand, within CSW01_02530 at 506.491 kb on + strand, within CSW01_02530
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 502,554 + +0.9 502,571 - -0.2 502,578 + +0.8 502,586 - +0.5 502,586 - -0.1 502,586 - +0.1 502,586 - +0.5 502,629 + CSW01_02520 0.14 +0.3 502,629 + CSW01_02520 0.14 +0.6 502,637 - CSW01_02520 0.15 -0.4 502,637 - CSW01_02520 0.15 -0.6 502,647 - CSW01_02520 0.16 -2.0 502,671 + CSW01_02520 0.19 +0.2 502,686 + CSW01_02520 0.21 +0.6 502,699 + CSW01_02520 0.22 -0.7 502,700 + CSW01_02520 0.22 -0.2 502,731 + CSW01_02520 0.26 +0.5 502,751 - CSW01_02520 0.28 +1.3 502,753 + CSW01_02520 0.28 +1.0 502,757 + CSW01_02520 0.29 -0.7 502,758 - CSW01_02520 0.29 +0.4 502,775 + CSW01_02520 0.31 -0.0 502,775 - CSW01_02520 0.31 -1.1 502,859 - CSW01_02520 0.40 +0.2 502,900 + CSW01_02520 0.44 +0.0 502,924 + CSW01_02520 0.47 +0.6 502,932 - CSW01_02520 0.48 +0.1 502,932 - CSW01_02520 0.48 +0.1 502,953 - CSW01_02520 0.50 -0.4 502,993 + CSW01_02520 0.55 +2.2 503,001 - CSW01_02520 0.56 +0.0 503,052 + CSW01_02520 0.61 -0.9 503,052 + CSW01_02520 0.61 -0.4 503,060 - CSW01_02520 0.62 +0.7 503,067 + CSW01_02520 0.63 +0.2 503,067 + CSW01_02520 0.63 +0.3 503,067 + CSW01_02520 0.63 -0.1 503,075 - CSW01_02520 0.64 -0.0 503,075 - CSW01_02520 0.64 +1.9 503,075 - CSW01_02520 0.64 +0.1 503,075 - CSW01_02520 0.64 -1.1 503,187 + CSW01_02520 0.76 +0.3 503,187 + CSW01_02520 0.76 -0.5 503,187 + CSW01_02520 0.76 -0.2 503,224 - CSW01_02520 0.81 -1.0 503,257 + CSW01_02520 0.84 +1.0 503,257 + CSW01_02520 0.84 -0.3 503,265 - CSW01_02520 0.85 +1.4 503,301 + CSW01_02520 0.89 -0.0 503,301 + CSW01_02520 0.89 +0.2 503,305 + CSW01_02520 0.90 -1.2 503,306 + CSW01_02520 0.90 -0.3 503,306 + CSW01_02520 0.90 -0.3 503,306 + CSW01_02520 0.90 +0.4 503,306 + CSW01_02520 0.90 -0.1 503,306 + CSW01_02520 0.90 -0.6 503,306 + CSW01_02520 0.90 +0.4 503,306 + CSW01_02520 0.90 +1.2 503,306 + CSW01_02520 0.90 +1.4 503,314 - -0.2 503,314 - +0.0 503,314 - -1.6 503,314 - +0.8 503,314 - +0.1 503,314 - +0.4 503,314 - +0.4 503,316 + +0.4 503,316 + -0.2 503,324 - +0.2 503,352 - +0.2 503,372 + -1.0 503,457 - -0.1 503,457 - -0.5 503,544 + -0.1 503,549 + -0.7 503,557 - +1.2 503,590 - +0.4 503,635 + +0.6 503,649 + -0.2 503,696 + -0.4 503,706 + +0.4 503,738 + CSW01_02525 0.10 -0.3 503,746 - CSW01_02525 0.10 +0.3 503,820 + CSW01_02525 0.14 -0.5 503,835 - CSW01_02525 0.15 +0.8 503,835 - CSW01_02525 0.15 +0.3 503,847 - CSW01_02525 0.16 -0.3 503,862 + CSW01_02525 0.16 +0.2 503,875 + CSW01_02525 0.17 +0.5 503,875 + CSW01_02525 0.17 +0.6 503,875 + CSW01_02525 0.17 +0.7 503,875 + CSW01_02525 0.17 +1.6 503,875 + CSW01_02525 0.17 -0.2 503,875 + CSW01_02525 0.17 +0.5 503,883 - CSW01_02525 0.17 -0.2 503,883 - CSW01_02525 0.17 -0.1 503,883 - CSW01_02525 0.17 +0.1 503,883 - CSW01_02525 0.17 -0.5 503,883 - CSW01_02525 0.17 -0.3 503,883 - CSW01_02525 0.17 +0.4 503,883 - CSW01_02525 0.17 -1.5 503,892 - CSW01_02525 0.18 -0.5 503,919 - CSW01_02525 0.19 +0.3 503,995 - CSW01_02525 0.23 +0.2 503,995 - CSW01_02525 0.23 +0.4 503,995 - CSW01_02525 0.23 -0.1 504,034 + CSW01_02525 0.25 +0.1 504,039 - CSW01_02525 0.25 -0.6 504,233 + CSW01_02525 0.35 +1.6 504,233 + CSW01_02525 0.35 +1.0 504,235 - CSW01_02525 0.35 -0.1 504,235 - CSW01_02525 0.35 +0.1 504,235 - CSW01_02525 0.35 +0.4 504,235 - CSW01_02525 0.35 -0.9 504,248 - CSW01_02525 0.36 +0.7 504,252 + CSW01_02525 0.36 -0.4 504,252 + CSW01_02525 0.36 -0.7 504,295 + CSW01_02525 0.38 +0.1 504,295 + CSW01_02525 0.38 +0.2 504,303 - CSW01_02525 0.39 -0.1 504,326 - CSW01_02525 0.40 +1.0 504,333 + CSW01_02525 0.40 +0.6 504,422 + CSW01_02525 0.45 -0.2 504,422 + CSW01_02525 0.45 +0.2 504,432 + CSW01_02525 0.45 +0.9 504,432 + CSW01_02525 0.45 -1.5 504,432 + CSW01_02525 0.45 +0.3 504,440 - CSW01_02525 0.46 -0.0 504,440 - CSW01_02525 0.46 +0.5 504,490 + CSW01_02525 0.48 -0.2 504,501 + CSW01_02525 0.49 +0.3 504,509 - CSW01_02525 0.49 +0.1 504,509 - CSW01_02525 0.49 +0.7 504,579 + CSW01_02525 0.53 +0.3 504,632 - CSW01_02525 0.56 -0.1 504,721 + CSW01_02525 0.60 +0.5 504,731 + CSW01_02525 0.61 +0.7 504,736 + CSW01_02525 0.61 +0.1 504,740 + CSW01_02525 0.61 +0.1 504,771 - CSW01_02525 0.63 +0.2 504,783 - CSW01_02525 0.63 +0.3 504,787 - CSW01_02525 0.64 +0.5 504,843 + CSW01_02525 0.66 -0.2 504,869 - CSW01_02525 0.68 +1.3 504,879 + CSW01_02525 0.68 +0.4 504,887 - CSW01_02525 0.69 +0.8 504,900 - CSW01_02525 0.69 -0.2 504,929 - CSW01_02525 0.71 +0.2 504,929 - CSW01_02525 0.71 +1.0 504,931 + CSW01_02525 0.71 -0.4 504,937 + CSW01_02525 0.71 +0.9 505,099 + CSW01_02525 0.79 -0.1 505,099 + CSW01_02525 0.79 -0.4 505,124 + CSW01_02525 0.81 -0.7 505,160 - CSW01_02525 0.83 +0.1 505,160 - CSW01_02525 0.83 +0.5 505,213 + CSW01_02525 0.85 +0.2 505,262 - CSW01_02525 0.88 -1.1 505,262 - CSW01_02525 0.88 +0.1 505,339 + -0.6 505,360 + -0.5 505,368 - -0.3 505,392 + -0.9 505,392 + -0.0 505,400 - +1.1 505,400 - +0.1 505,400 - -1.0 505,400 - +0.7 505,400 - +0.6 505,400 - +0.8 505,413 - -0.2 505,413 - +0.4 505,413 - +0.4 505,441 + +0.2 505,441 + -0.1 505,441 + +0.7 505,441 + +0.5 505,441 + -0.1 505,441 + +0.2 505,441 + +0.1 505,441 + -0.4 505,441 + -0.4 505,449 - +0.6 505,449 - +0.8 505,449 - +0.0 505,449 - -0.2 505,449 - -0.1 505,449 - -0.0 505,449 - +0.6 505,449 - +0.2 505,449 - +0.3 505,449 - +0.7 505,449 - -0.7 505,449 - -0.2 505,449 - +0.2 505,449 - -1.9 505,449 - +2.6 505,449 - +0.9 505,449 - +1.8 505,449 - +0.7 505,449 - -2.8 505,449 - +0.2 505,480 + +0.4 505,517 - +0.6 505,518 - +0.7 505,518 - -1.4 505,518 - +0.3 505,581 + +1.0 505,605 - +0.3 505,612 - -0.3 505,652 + +0.1 505,659 + +0.2 505,659 + -0.7 505,688 - +2.0 505,709 + +0.1 505,709 + -0.1 505,709 + -1.2 505,719 - +0.9 505,770 - CSW01_02530 0.12 -0.1 505,849 + CSW01_02530 0.19 +0.1 505,957 - CSW01_02530 0.30 -0.5 505,959 + CSW01_02530 0.30 +0.0 505,959 + CSW01_02530 0.30 -0.7 505,962 - CSW01_02530 0.30 +0.2 505,964 + CSW01_02530 0.30 -0.1 505,967 - CSW01_02530 0.31 -0.1 505,972 - CSW01_02530 0.31 +0.2 505,975 - CSW01_02530 0.31 -0.1 505,997 - CSW01_02530 0.34 +0.6 506,089 + CSW01_02530 0.43 +1.0 506,097 - CSW01_02530 0.43 -0.6 506,101 + CSW01_02530 0.44 -0.1 506,139 + CSW01_02530 0.47 -1.0 506,159 + CSW01_02530 0.49 +0.4 506,167 - CSW01_02530 0.50 -0.5 506,399 + CSW01_02530 0.73 -1.1 506,483 - CSW01_02530 0.81 +0.1 506,491 + CSW01_02530 0.82 -0.4
Or see this region's nucleotide sequence