Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02165

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02155 and CSW01_02160 are separated by 36 nucleotidesCSW01_02160 and CSW01_02165 overlap by 53 nucleotidesCSW01_02165 and CSW01_02170 overlap by 1 nucleotidesCSW01_02170 and CSW01_02175 overlap by 35 nucleotides CSW01_02155: CSW01_02155 - MSHA pilin protein MshA, at 434,190 to 434,726 _02155 CSW01_02160: CSW01_02160 - MSHA pilin protein MshC, at 434,763 to 435,251 _02160 CSW01_02165: CSW01_02165 - MSHA pilin protein MshD, at 435,199 to 435,810 _02165 CSW01_02170: CSW01_02170 - type II secretion system protein, at 435,810 to 436,580 _02170 CSW01_02175: CSW01_02175 - MSHA biogenesis protein MshP, at 436,546 to 436,977 _02175 Position (kb) 435 436Strain fitness (log2 ratio) -1 0 1 2 3 4at 434.214 kb on + strandat 434.267 kb on + strand, within CSW01_02155at 434.302 kb on - strand, within CSW01_02155at 434.405 kb on - strand, within CSW01_02155at 434.412 kb on + strand, within CSW01_02155at 434.412 kb on + strand, within CSW01_02155at 434.433 kb on + strand, within CSW01_02155at 434.520 kb on - strand, within CSW01_02155at 434.526 kb on + strand, within CSW01_02155at 434.636 kb on + strand, within CSW01_02155at 434.644 kb on - strand, within CSW01_02155at 434.684 kb on + strandat 434.684 kb on + strandat 434.684 kb on + strandat 434.692 kb on - strandat 434.692 kb on - strandat 434.708 kb on + strandat 434.708 kb on + strandat 434.781 kb on + strandat 434.782 kb on + strandat 434.782 kb on + strandat 434.789 kb on - strandat 434.790 kb on - strandat 434.831 kb on - strand, within CSW01_02160at 434.861 kb on + strand, within CSW01_02160at 434.919 kb on + strand, within CSW01_02160at 434.919 kb on + strand, within CSW01_02160at 434.919 kb on + strand, within CSW01_02160at 434.922 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.927 kb on - strand, within CSW01_02160at 434.947 kb on - strand, within CSW01_02160at 435.006 kb on + strand, within CSW01_02160at 435.014 kb on - strand, within CSW01_02160at 435.014 kb on - strand, within CSW01_02160at 435.014 kb on - strand, within CSW01_02160at 435.019 kb on - strand, within CSW01_02160at 435.051 kb on - strand, within CSW01_02160at 435.082 kb on - strand, within CSW01_02160at 435.132 kb on + strand, within CSW01_02160at 435.133 kb on + strand, within CSW01_02160at 435.155 kb on - strand, within CSW01_02160at 435.165 kb on - strand, within CSW01_02160at 435.187 kb on + strand, within CSW01_02160at 435.203 kb on + strandat 435.205 kb on - strandat 435.231 kb on + strandat 435.231 kb on + strandat 435.231 kb on + strandat 435.237 kb on + strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.279 kb on - strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.314 kb on + strand, within CSW01_02165at 435.322 kb on - strand, within CSW01_02165at 435.353 kb on + strand, within CSW01_02165at 435.361 kb on - strand, within CSW01_02165at 435.361 kb on - strand, within CSW01_02165at 435.365 kb on + strand, within CSW01_02165at 435.397 kb on + strand, within CSW01_02165at 435.397 kb on + strand, within CSW01_02165at 435.405 kb on - strand, within CSW01_02165at 435.415 kb on - strand, within CSW01_02165at 435.415 kb on - strand, within CSW01_02165at 435.424 kb on + strand, within CSW01_02165at 435.424 kb on + strand, within CSW01_02165at 435.460 kb on + strand, within CSW01_02165at 435.462 kb on - strand, within CSW01_02165at 435.468 kb on - strand, within CSW01_02165at 435.500 kb on + strand, within CSW01_02165at 435.500 kb on + strand, within CSW01_02165at 435.508 kb on - strand, within CSW01_02165at 435.508 kb on - strand, within CSW01_02165at 435.508 kb on - strand, within CSW01_02165at 435.529 kb on - strand, within CSW01_02165at 435.593 kb on - strand, within CSW01_02165at 435.604 kb on - strand, within CSW01_02165at 435.719 kb on - strand, within CSW01_02165at 435.732 kb on + strand, within CSW01_02165at 435.781 kb on - strandat 435.792 kb on + strandat 435.801 kb on - strandat 435.812 kb on - strandat 435.814 kb on + strandat 435.847 kb on + strandat 435.855 kb on - strandat 435.855 kb on - strandat 435.894 kb on + strand, within CSW01_02170at 435.894 kb on - strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.976 kb on + strand, within CSW01_02170at 435.977 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.984 kb on - strand, within CSW01_02170at 435.986 kb on + strand, within CSW01_02170at 435.986 kb on + strand, within CSW01_02170at 435.993 kb on + strand, within CSW01_02170at 435.994 kb on - strand, within CSW01_02170at 435.994 kb on - strand, within CSW01_02170at 435.994 kb on - strand, within CSW01_02170at 435.994 kb on - strand, within CSW01_02170at 435.996 kb on + strand, within CSW01_02170at 436.004 kb on - strand, within CSW01_02170at 436.006 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.044 kb on + strand, within CSW01_02170at 436.052 kb on - strand, within CSW01_02170at 436.052 kb on - strand, within CSW01_02170at 436.067 kb on + strand, within CSW01_02170at 436.093 kb on - strand, within CSW01_02170at 436.126 kb on + strand, within CSW01_02170at 436.167 kb on + strand, within CSW01_02170at 436.167 kb on + strand, within CSW01_02170at 436.175 kb on - strand, within CSW01_02170at 436.175 kb on - strand, within CSW01_02170at 436.182 kb on + strand, within CSW01_02170at 436.227 kb on - strand, within CSW01_02170at 436.239 kb on + strand, within CSW01_02170at 436.242 kb on - strand, within CSW01_02170at 436.280 kb on - strand, within CSW01_02170at 436.280 kb on - strand, within CSW01_02170at 436.280 kb on - strand, within CSW01_02170at 436.290 kb on + strand, within CSW01_02170at 436.291 kb on + strand, within CSW01_02170at 436.337 kb on + strand, within CSW01_02170at 436.350 kb on - strand, within CSW01_02170at 436.352 kb on + strand, within CSW01_02170at 436.372 kb on + strand, within CSW01_02170at 436.446 kb on - strand, within CSW01_02170at 436.467 kb on + strand, within CSW01_02170at 436.548 kb on + strandat 436.582 kb on + strandat 436.587 kb on + strandat 436.602 kb on - strand, within CSW01_02175at 436.602 kb on - strand, within CSW01_02175at 436.681 kb on - strand, within CSW01_02175at 436.695 kb on + strand, within CSW01_02175at 436.796 kb on - strand, within CSW01_02175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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434,214 + +0.9
434,267 + CSW01_02155 0.14 +1.0
434,302 - CSW01_02155 0.21 +0.5
434,405 - CSW01_02155 0.40 +0.6
434,412 + CSW01_02155 0.41 +0.7
434,412 + CSW01_02155 0.41 +0.9
434,433 + CSW01_02155 0.45 +0.8
434,520 - CSW01_02155 0.61 +1.1
434,526 + CSW01_02155 0.63 +1.1
434,636 + CSW01_02155 0.83 -0.3
434,644 - CSW01_02155 0.85 +1.5
434,684 + +1.3
434,684 + +1.1
434,684 + +0.4
434,692 - +0.7
434,692 - +0.2
434,708 + +1.5
434,708 + +1.0
434,781 + +1.0
434,782 + +0.9
434,782 + +1.4
434,789 - +0.5
434,790 - +1.1
434,831 - CSW01_02160 0.14 +0.9
434,861 + CSW01_02160 0.20 +1.0
434,919 + CSW01_02160 0.32 +0.6
434,919 + CSW01_02160 0.32 +0.1
434,919 + CSW01_02160 0.32 +0.5
434,922 - CSW01_02160 0.33 +0.9
434,927 - CSW01_02160 0.34 +1.5
434,927 - CSW01_02160 0.34 +0.8
434,927 - CSW01_02160 0.34 +0.3
434,927 - CSW01_02160 0.34 +0.8
434,927 - CSW01_02160 0.34 +1.1
434,947 - CSW01_02160 0.38 +1.1
435,006 + CSW01_02160 0.50 +0.8
435,014 - CSW01_02160 0.51 +1.1
435,014 - CSW01_02160 0.51 +0.5
435,014 - CSW01_02160 0.51 +0.6
435,019 - CSW01_02160 0.52 +0.6
435,051 - CSW01_02160 0.59 +0.7
435,082 - CSW01_02160 0.65 +0.5
435,132 + CSW01_02160 0.75 +1.0
435,133 + CSW01_02160 0.76 +0.6
435,155 - CSW01_02160 0.80 +2.0
435,165 - CSW01_02160 0.82 +0.5
435,187 + CSW01_02160 0.87 +1.1
435,203 + +0.7
435,205 - +0.6
435,231 + +2.2
435,231 + +0.7
435,231 + +0.6
435,237 + -0.2
435,239 - +0.6
435,239 - +0.8
435,239 - +0.3
435,239 - +2.6
435,239 - +0.8
435,239 - +0.6
435,279 - CSW01_02165 0.13 +1.1
435,314 + CSW01_02165 0.19 +0.5
435,314 + CSW01_02165 0.19 +0.6
435,314 + CSW01_02165 0.19 +1.0
435,314 + CSW01_02165 0.19 +0.9
435,314 + CSW01_02165 0.19 +0.7
435,314 + CSW01_02165 0.19 +0.6
435,322 - CSW01_02165 0.20 +0.9
435,353 + CSW01_02165 0.25 +0.9
435,361 - CSW01_02165 0.26 +0.5
435,361 - CSW01_02165 0.26 -0.3
435,365 + CSW01_02165 0.27 +0.9
435,397 + CSW01_02165 0.32 +0.6
435,397 + CSW01_02165 0.32 +0.5
435,405 - CSW01_02165 0.34 +0.3
435,415 - CSW01_02165 0.35 +0.7
435,415 - CSW01_02165 0.35 +0.4
435,424 + CSW01_02165 0.37 +1.1
435,424 + CSW01_02165 0.37 +0.2
435,460 + CSW01_02165 0.43 +0.2
435,462 - CSW01_02165 0.43 +4.0
435,468 - CSW01_02165 0.44 +0.6
435,500 + CSW01_02165 0.49 +0.8
435,500 + CSW01_02165 0.49 +0.9
435,508 - CSW01_02165 0.50 +1.9
435,508 - CSW01_02165 0.50 +0.7
435,508 - CSW01_02165 0.50 +0.5
435,529 - CSW01_02165 0.54 +0.7
435,593 - CSW01_02165 0.64 +0.3
435,604 - CSW01_02165 0.66 +1.0
435,719 - CSW01_02165 0.85 +1.1
435,732 + CSW01_02165 0.87 +0.5
435,781 - +0.9
435,792 + +0.8
435,801 - -0.1
435,812 - +0.8
435,814 + +1.5
435,847 + +0.7
435,855 - +0.6
435,855 - +1.4
435,894 + CSW01_02170 0.11 +0.4
435,894 - CSW01_02170 0.11 +0.9
435,976 + CSW01_02170 0.22 +1.3
435,976 + CSW01_02170 0.22 +1.2
435,976 + CSW01_02170 0.22 +0.9
435,976 + CSW01_02170 0.22 +0.6
435,976 + CSW01_02170 0.22 +1.3
435,976 + CSW01_02170 0.22 +1.2
435,976 + CSW01_02170 0.22 +1.0
435,976 + CSW01_02170 0.22 +1.1
435,977 - CSW01_02170 0.22 +0.9
435,984 - CSW01_02170 0.23 +1.3
435,984 - CSW01_02170 0.23 +1.9
435,984 - CSW01_02170 0.23 +1.7
435,984 - CSW01_02170 0.23 +0.5
435,984 - CSW01_02170 0.23 +1.0
435,984 - CSW01_02170 0.23 +0.5
435,984 - CSW01_02170 0.23 +0.9
435,984 - CSW01_02170 0.23 +1.2
435,984 - CSW01_02170 0.23 +0.9
435,986 + CSW01_02170 0.23 +0.2
435,986 + CSW01_02170 0.23 +0.7
435,993 + CSW01_02170 0.24 +2.5
435,994 - CSW01_02170 0.24 -0.2
435,994 - CSW01_02170 0.24 +0.5
435,994 - CSW01_02170 0.24 +1.4
435,994 - CSW01_02170 0.24 +0.7
435,996 + CSW01_02170 0.24 +0.3
436,004 - CSW01_02170 0.25 -0.2
436,006 + CSW01_02170 0.25 +0.8
436,044 + CSW01_02170 0.30 +0.5
436,044 + CSW01_02170 0.30 -0.1
436,044 + CSW01_02170 0.30 +0.5
436,044 + CSW01_02170 0.30 +0.6
436,044 + CSW01_02170 0.30 +0.3
436,044 + CSW01_02170 0.30 +0.4
436,044 + CSW01_02170 0.30 +0.8
436,044 + CSW01_02170 0.30 +0.8
436,052 - CSW01_02170 0.31 +0.6
436,052 - CSW01_02170 0.31 +2.2
436,067 + CSW01_02170 0.33 +1.2
436,093 - CSW01_02170 0.37 +0.9
436,126 + CSW01_02170 0.41 +0.4
436,167 + CSW01_02170 0.46 +0.9
436,167 + CSW01_02170 0.46 +1.0
436,175 - CSW01_02170 0.47 +0.9
436,175 - CSW01_02170 0.47 +0.5
436,182 + CSW01_02170 0.48 +0.5
436,227 - CSW01_02170 0.54 +1.1
436,239 + CSW01_02170 0.56 +0.5
436,242 - CSW01_02170 0.56 +1.0
436,280 - CSW01_02170 0.61 +0.7
436,280 - CSW01_02170 0.61 +0.8
436,280 - CSW01_02170 0.61 +0.8
436,290 + CSW01_02170 0.62 +0.8
436,291 + CSW01_02170 0.62 +0.0
436,337 + CSW01_02170 0.68 +0.5
436,350 - CSW01_02170 0.70 +1.0
436,352 + CSW01_02170 0.70 +1.6
436,372 + CSW01_02170 0.73 +1.2
436,446 - CSW01_02170 0.82 +0.6
436,467 + CSW01_02170 0.85 +0.9
436,548 + +0.4
436,582 + +0.7
436,587 + +0.9
436,602 - CSW01_02175 0.13 +0.6
436,602 - CSW01_02175 0.13 +0.2
436,681 - CSW01_02175 0.31 +0.8
436,695 + CSW01_02175 0.34 +0.2
436,796 - CSW01_02175 0.58 +2.0

Or see this region's nucleotide sequence