Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02130

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02120 and CSW01_02125 are separated by 4 nucleotidesCSW01_02125 and CSW01_02130 overlap by 22 nucleotidesCSW01_02130 and CSW01_02135 overlap by 11 nucleotides CSW01_02120: CSW01_02120 - pilus (MSHA type) biogenesis protein MshL, at 426,448 to 428,127 _02120 CSW01_02125: CSW01_02125 - MSHA biogenesis protein MshM, at 428,132 to 428,977 _02125 CSW01_02130: CSW01_02130 - MSHA biogenesis protein MshN, at 428,956 to 430,125 _02130 CSW01_02135: CSW01_02135 - MSHA biogenesis protein MshE, at 430,115 to 431,842 _02135 Position (kb) 428 429 430 431Strain fitness (log2 ratio) -1 0 1 2at 427.997 kb on + strandat 428.005 kb on - strandat 428.055 kb on + strandat 428.063 kb on - strandat 428.082 kb on - strandat 428.108 kb on - strandat 428.109 kb on - strandat 428.151 kb on + strandat 428.151 kb on + strandat 428.159 kb on - strandat 428.239 kb on - strand, within CSW01_02125at 428.279 kb on + strand, within CSW01_02125at 428.340 kb on + strand, within CSW01_02125at 428.364 kb on + strand, within CSW01_02125at 428.372 kb on - strand, within CSW01_02125at 428.385 kb on + strand, within CSW01_02125at 428.385 kb on + strand, within CSW01_02125at 428.392 kb on - strand, within CSW01_02125at 428.392 kb on - strand, within CSW01_02125at 428.392 kb on - strand, within CSW01_02125at 428.416 kb on - strand, within CSW01_02125at 428.431 kb on + strand, within CSW01_02125at 428.452 kb on + strand, within CSW01_02125at 428.452 kb on + strand, within CSW01_02125at 428.452 kb on - strand, within CSW01_02125at 428.467 kb on + strand, within CSW01_02125at 428.505 kb on - strand, within CSW01_02125at 428.506 kb on + strand, within CSW01_02125at 428.511 kb on + strand, within CSW01_02125at 428.534 kb on - strand, within CSW01_02125at 428.588 kb on - strand, within CSW01_02125at 428.588 kb on - strand, within CSW01_02125at 428.615 kb on + strand, within CSW01_02125at 428.764 kb on + strand, within CSW01_02125at 428.764 kb on + strand, within CSW01_02125at 428.764 kb on + strand, within CSW01_02125at 428.772 kb on - strand, within CSW01_02125at 428.772 kb on - strand, within CSW01_02125at 428.772 kb on - strand, within CSW01_02125at 428.809 kb on - strand, within CSW01_02125at 428.846 kb on + strand, within CSW01_02125at 428.854 kb on - strand, within CSW01_02125at 428.923 kb on - strandat 428.923 kb on - strandat 428.923 kb on - strandat 428.970 kb on + strandat 428.997 kb on + strandat 429.060 kb on + strandat 429.081 kb on + strand, within CSW01_02130at 429.088 kb on - strand, within CSW01_02130at 429.098 kb on + strand, within CSW01_02130at 429.098 kb on + strand, within CSW01_02130at 429.118 kb on - strand, within CSW01_02130at 429.128 kb on + strand, within CSW01_02130at 429.129 kb on + strand, within CSW01_02130at 429.155 kb on + strand, within CSW01_02130at 429.155 kb on + strand, within CSW01_02130at 429.157 kb on + strand, within CSW01_02130at 429.165 kb on - strand, within CSW01_02130at 429.207 kb on + strand, within CSW01_02130at 429.270 kb on + strand, within CSW01_02130at 429.351 kb on - strand, within CSW01_02130at 429.351 kb on - strand, within CSW01_02130at 429.361 kb on - strand, within CSW01_02130at 429.407 kb on + strand, within CSW01_02130at 429.407 kb on + strand, within CSW01_02130at 429.414 kb on + strand, within CSW01_02130at 429.415 kb on - strand, within CSW01_02130at 429.430 kb on + strand, within CSW01_02130at 429.430 kb on + strand, within CSW01_02130at 429.430 kb on + strand, within CSW01_02130at 429.457 kb on - strand, within CSW01_02130at 429.464 kb on - strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.485 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.510 kb on - strand, within CSW01_02130at 429.512 kb on + strand, within CSW01_02130at 429.520 kb on - strand, within CSW01_02130at 429.535 kb on - strand, within CSW01_02130at 429.541 kb on - strand, within CSW01_02130at 429.556 kb on + strand, within CSW01_02130at 429.607 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.638 kb on - strand, within CSW01_02130at 429.638 kb on - strand, within CSW01_02130at 429.638 kb on - strand, within CSW01_02130at 429.699 kb on - strand, within CSW01_02130at 429.715 kb on - strand, within CSW01_02130at 429.749 kb on + strand, within CSW01_02130at 429.749 kb on + strand, within CSW01_02130at 429.757 kb on - strand, within CSW01_02130at 429.791 kb on - strand, within CSW01_02130at 429.848 kb on - strand, within CSW01_02130at 429.848 kb on - strand, within CSW01_02130at 429.864 kb on - strand, within CSW01_02130at 429.900 kb on - strand, within CSW01_02130at 429.984 kb on - strand, within CSW01_02130at 430.019 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.105 kb on - strandat 430.105 kb on - strandat 430.105 kb on - strandat 430.105 kb on - strandat 430.105 kb on - strandat 430.115 kb on - strandat 430.148 kb on - strandat 430.232 kb on + strandat 430.316 kb on + strand, within CSW01_02135at 430.368 kb on - strand, within CSW01_02135at 430.410 kb on + strand, within CSW01_02135at 430.410 kb on + strand, within CSW01_02135at 430.418 kb on - strand, within CSW01_02135at 430.418 kb on - strand, within CSW01_02135at 430.418 kb on - strand, within CSW01_02135at 430.420 kb on + strand, within CSW01_02135at 430.420 kb on + strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.430 kb on - strand, within CSW01_02135at 430.463 kb on + strand, within CSW01_02135at 430.467 kb on + strand, within CSW01_02135at 430.491 kb on + strand, within CSW01_02135at 430.597 kb on + strand, within CSW01_02135at 430.652 kb on - strand, within CSW01_02135at 430.652 kb on - strand, within CSW01_02135at 430.689 kb on - strand, within CSW01_02135at 430.712 kb on + strand, within CSW01_02135at 430.744 kb on - strand, within CSW01_02135at 430.752 kb on - strand, within CSW01_02135at 430.772 kb on - strand, within CSW01_02135at 430.789 kb on - strand, within CSW01_02135at 430.812 kb on + strand, within CSW01_02135at 430.817 kb on + strand, within CSW01_02135at 430.820 kb on - strand, within CSW01_02135at 430.909 kb on - strand, within CSW01_02135at 430.935 kb on - strand, within CSW01_02135at 430.945 kb on - strand, within CSW01_02135at 430.955 kb on - strand, within CSW01_02135at 430.963 kb on - strand, within CSW01_02135at 430.972 kb on + strand, within CSW01_02135at 431.030 kb on - strand, within CSW01_02135at 431.064 kb on + strand, within CSW01_02135at 431.104 kb on - strand, within CSW01_02135at 431.116 kb on - strand, within CSW01_02135

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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427,997 + +1.0
428,005 - +0.9
428,055 + +0.7
428,063 - +1.1
428,082 - +0.4
428,108 - +0.5
428,109 - +0.8
428,151 + +0.5
428,151 + -0.2
428,159 - +0.4
428,239 - CSW01_02125 0.13 +1.5
428,279 + CSW01_02125 0.17 +0.1
428,340 + CSW01_02125 0.25 +0.9
428,364 + CSW01_02125 0.27 +0.2
428,372 - CSW01_02125 0.28 +0.3
428,385 + CSW01_02125 0.30 +0.8
428,385 + CSW01_02125 0.30 +1.6
428,392 - CSW01_02125 0.31 +0.0
428,392 - CSW01_02125 0.31 +1.1
428,392 - CSW01_02125 0.31 +2.4
428,416 - CSW01_02125 0.34 +0.6
428,431 + CSW01_02125 0.35 +0.1
428,452 + CSW01_02125 0.38 +0.8
428,452 + CSW01_02125 0.38 +0.6
428,452 - CSW01_02125 0.38 +1.2
428,467 + CSW01_02125 0.40 +0.7
428,505 - CSW01_02125 0.44 +1.2
428,506 + CSW01_02125 0.44 +0.6
428,511 + CSW01_02125 0.45 +1.4
428,534 - CSW01_02125 0.48 +1.1
428,588 - CSW01_02125 0.54 +0.2
428,588 - CSW01_02125 0.54 +0.9
428,615 + CSW01_02125 0.57 -0.5
428,764 + CSW01_02125 0.75 +0.2
428,764 + CSW01_02125 0.75 +0.9
428,764 + CSW01_02125 0.75 +0.1
428,772 - CSW01_02125 0.76 +0.9
428,772 - CSW01_02125 0.76 +0.3
428,772 - CSW01_02125 0.76 -0.1
428,809 - CSW01_02125 0.80 +0.3
428,846 + CSW01_02125 0.84 +0.5
428,854 - CSW01_02125 0.85 +1.0
428,923 - +0.1
428,923 - +0.8
428,923 - +0.7
428,970 + +0.5
428,997 + +1.8
429,060 + +0.9
429,081 + CSW01_02130 0.11 +1.5
429,088 - CSW01_02130 0.11 +0.9
429,098 + CSW01_02130 0.12 +0.9
429,098 + CSW01_02130 0.12 +0.8
429,118 - CSW01_02130 0.14 +1.4
429,128 + CSW01_02130 0.15 +1.4
429,129 + CSW01_02130 0.15 +0.6
429,155 + CSW01_02130 0.17 +1.0
429,155 + CSW01_02130 0.17 +0.1
429,157 + CSW01_02130 0.17 +0.0
429,165 - CSW01_02130 0.18 +1.3
429,207 + CSW01_02130 0.21 +0.7
429,270 + CSW01_02130 0.27 +1.5
429,351 - CSW01_02130 0.34 -0.2
429,351 - CSW01_02130 0.34 +0.8
429,361 - CSW01_02130 0.35 -0.3
429,407 + CSW01_02130 0.39 +0.6
429,407 + CSW01_02130 0.39 +0.9
429,414 + CSW01_02130 0.39 +1.4
429,415 - CSW01_02130 0.39 +0.2
429,430 + CSW01_02130 0.41 +1.6
429,430 + CSW01_02130 0.41 +0.5
429,430 + CSW01_02130 0.41 +1.1
429,457 - CSW01_02130 0.43 +0.8
429,464 - CSW01_02130 0.43 +0.5
429,478 + CSW01_02130 0.45 +1.1
429,478 + CSW01_02130 0.45 +0.4
429,478 + CSW01_02130 0.45 +1.0
429,478 + CSW01_02130 0.45 +1.3
429,478 + CSW01_02130 0.45 +0.8
429,485 - CSW01_02130 0.45 +0.9
429,486 - CSW01_02130 0.45 +0.4
429,486 - CSW01_02130 0.45 +0.3
429,486 - CSW01_02130 0.45 +0.2
429,486 - CSW01_02130 0.45 +0.5
429,510 - CSW01_02130 0.47 +0.9
429,512 + CSW01_02130 0.48 +0.9
429,520 - CSW01_02130 0.48 +1.1
429,535 - CSW01_02130 0.49 +0.6
429,541 - CSW01_02130 0.50 +2.2
429,556 + CSW01_02130 0.51 +0.0
429,607 + CSW01_02130 0.56 +0.4
429,630 + CSW01_02130 0.58 +1.1
429,630 + CSW01_02130 0.58 +1.6
429,630 + CSW01_02130 0.58 +1.0
429,630 + CSW01_02130 0.58 +1.3
429,630 + CSW01_02130 0.58 +0.9
429,630 + CSW01_02130 0.58 +0.6
429,630 + CSW01_02130 0.58 +1.0
429,638 - CSW01_02130 0.58 +1.2
429,638 - CSW01_02130 0.58 +0.7
429,638 - CSW01_02130 0.58 +0.8
429,699 - CSW01_02130 0.64 +1.1
429,715 - CSW01_02130 0.65 +0.5
429,749 + CSW01_02130 0.68 +0.5
429,749 + CSW01_02130 0.68 +1.5
429,757 - CSW01_02130 0.68 +0.8
429,791 - CSW01_02130 0.71 +1.4
429,848 - CSW01_02130 0.76 +1.6
429,848 - CSW01_02130 0.76 +1.1
429,864 - CSW01_02130 0.78 +0.7
429,900 - CSW01_02130 0.81 +1.1
429,984 - CSW01_02130 0.88 +1.4
430,019 + +0.1
430,097 + +0.0
430,097 + +0.3
430,097 + +0.3
430,097 + +0.8
430,097 + +1.4
430,097 + +0.1
430,097 + +0.1
430,097 + +0.0
430,097 + +0.9
430,097 + +0.7
430,097 + +0.2
430,097 + -0.4
430,097 + +1.0
430,097 + +0.6
430,097 + +0.2
430,097 + +1.2
430,097 + +0.3
430,097 + +0.8
430,105 - +0.6
430,105 - +1.2
430,105 - +1.1
430,105 - +0.9
430,105 - +0.8
430,115 - +1.2
430,148 - +1.0
430,232 + +0.2
430,316 + CSW01_02135 0.12 +0.4
430,368 - CSW01_02135 0.15 +0.5
430,410 + CSW01_02135 0.17 +1.1
430,410 + CSW01_02135 0.17 +0.9
430,418 - CSW01_02135 0.18 +0.7
430,418 - CSW01_02135 0.18 +0.3
430,418 - CSW01_02135 0.18 +0.0
430,420 + CSW01_02135 0.18 +0.3
430,420 + CSW01_02135 0.18 +0.9
430,428 - CSW01_02135 0.18 +0.7
430,428 - CSW01_02135 0.18 +0.4
430,428 - CSW01_02135 0.18 +0.2
430,428 - CSW01_02135 0.18 +0.5
430,428 - CSW01_02135 0.18 -0.7
430,430 - CSW01_02135 0.18 +0.9
430,463 + CSW01_02135 0.20 +0.8
430,467 + CSW01_02135 0.20 +0.7
430,491 + CSW01_02135 0.22 +0.7
430,597 + CSW01_02135 0.28 +0.1
430,652 - CSW01_02135 0.31 +1.2
430,652 - CSW01_02135 0.31 +0.6
430,689 - CSW01_02135 0.33 +0.9
430,712 + CSW01_02135 0.35 +0.7
430,744 - CSW01_02135 0.36 +0.5
430,752 - CSW01_02135 0.37 +0.5
430,772 - CSW01_02135 0.38 +0.8
430,789 - CSW01_02135 0.39 +0.7
430,812 + CSW01_02135 0.40 +0.5
430,817 + CSW01_02135 0.41 +0.3
430,820 - CSW01_02135 0.41 +0.5
430,909 - CSW01_02135 0.46 -0.2
430,935 - CSW01_02135 0.47 +0.9
430,945 - CSW01_02135 0.48 +0.5
430,955 - CSW01_02135 0.49 +1.4
430,963 - CSW01_02135 0.49 +0.6
430,972 + CSW01_02135 0.50 +1.6
431,030 - CSW01_02135 0.53 +1.1
431,064 + CSW01_02135 0.55 +1.3
431,104 - CSW01_02135 0.57 +1.0
431,116 - CSW01_02135 0.58 +1.4

Or see this region's nucleotide sequence