Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01845

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01840 and CSW01_01845 are separated by 45 nucleotidesCSW01_01845 and CSW01_01850 are separated by 2 nucleotides CSW01_01840: CSW01_01840 - GTPase HflX, at 369,186 to 370,475 _01840 CSW01_01845: CSW01_01845 - protease modulator HflK, at 370,521 to 371,708 _01845 CSW01_01850: CSW01_01850 - protease modulator HflC, at 371,711 to 372,691 _01850 Position (kb) 370 371 372Strain fitness (log2 ratio) -2 -1 0 1 2at 369.575 kb on + strand, within CSW01_01840at 369.636 kb on + strand, within CSW01_01840at 369.639 kb on - strand, within CSW01_01840at 369.644 kb on - strand, within CSW01_01840at 369.662 kb on + strand, within CSW01_01840at 369.744 kb on - strand, within CSW01_01840at 369.803 kb on - strand, within CSW01_01840at 369.814 kb on + strand, within CSW01_01840at 369.846 kb on + strand, within CSW01_01840at 369.891 kb on - strand, within CSW01_01840at 369.921 kb on - strand, within CSW01_01840at 370.168 kb on - strand, within CSW01_01840at 370.176 kb on - strand, within CSW01_01840at 370.190 kb on - strand, within CSW01_01840at 370.200 kb on + strand, within CSW01_01840at 370.201 kb on - strand, within CSW01_01840at 370.215 kb on + strand, within CSW01_01840at 370.223 kb on - strand, within CSW01_01840at 370.231 kb on - strand, within CSW01_01840at 370.244 kb on - strand, within CSW01_01840at 370.244 kb on - strand, within CSW01_01840at 370.256 kb on + strand, within CSW01_01840at 370.260 kb on - strand, within CSW01_01840at 370.366 kb on + strandat 370.424 kb on - strandat 370.470 kb on + strandat 370.533 kb on - strandat 370.665 kb on - strand, within CSW01_01845at 370.729 kb on + strand, within CSW01_01845at 370.784 kb on - strand, within CSW01_01845at 370.807 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.812 kb on + strand, within CSW01_01845at 370.815 kb on - strand, within CSW01_01845at 370.820 kb on - strand, within CSW01_01845at 370.820 kb on - strand, within CSW01_01845at 370.820 kb on - strand, within CSW01_01845at 370.859 kb on - strand, within CSW01_01845at 370.924 kb on + strand, within CSW01_01845at 370.925 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.932 kb on - strand, within CSW01_01845at 370.955 kb on + strand, within CSW01_01845at 370.975 kb on - strand, within CSW01_01845at 370.977 kb on + strand, within CSW01_01845at 371.055 kb on - strand, within CSW01_01845at 371.081 kb on - strand, within CSW01_01845at 371.146 kb on + strand, within CSW01_01845at 371.201 kb on + strand, within CSW01_01845at 371.221 kb on - strand, within CSW01_01845at 371.298 kb on + strand, within CSW01_01845at 371.333 kb on - strand, within CSW01_01845at 371.333 kb on - strand, within CSW01_01845at 371.363 kb on + strand, within CSW01_01845at 371.432 kb on + strand, within CSW01_01845at 371.440 kb on - strand, within CSW01_01845at 371.490 kb on + strand, within CSW01_01845at 371.498 kb on - strand, within CSW01_01845at 371.668 kb on + strandat 371.683 kb on + strandat 371.691 kb on + strandat 371.691 kb on + strandat 371.699 kb on - strandat 371.699 kb on - strandat 371.699 kb on - strandat 371.699 kb on - strandat 371.733 kb on + strandat 371.743 kb on + strandat 371.751 kb on - strandat 371.761 kb on - strandat 371.884 kb on + strand, within CSW01_01850at 371.890 kb on - strand, within CSW01_01850at 371.901 kb on + strand, within CSW01_01850at 371.901 kb on + strand, within CSW01_01850at 372.060 kb on + strand, within CSW01_01850at 372.114 kb on + strand, within CSW01_01850at 372.214 kb on + strand, within CSW01_01850at 372.261 kb on - strand, within CSW01_01850at 372.389 kb on + strand, within CSW01_01850at 372.464 kb on - strand, within CSW01_01850at 372.479 kb on - strand, within CSW01_01850at 372.632 kb on + strandat 372.648 kb on - strandat 372.704 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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369,575 + CSW01_01840 0.30 +1.1
369,636 + CSW01_01840 0.35 +0.3
369,639 - CSW01_01840 0.35 +0.3
369,644 - CSW01_01840 0.36 -0.8
369,662 + CSW01_01840 0.37 +0.3
369,744 - CSW01_01840 0.43 -0.2
369,803 - CSW01_01840 0.48 -0.6
369,814 + CSW01_01840 0.49 -0.5
369,846 + CSW01_01840 0.51 +0.9
369,891 - CSW01_01840 0.55 +0.5
369,921 - CSW01_01840 0.57 -0.9
370,168 - CSW01_01840 0.76 -1.8
370,176 - CSW01_01840 0.77 +0.3
370,190 - CSW01_01840 0.78 -0.0
370,200 + CSW01_01840 0.79 +1.1
370,201 - CSW01_01840 0.79 -0.1
370,215 + CSW01_01840 0.80 -0.7
370,223 - CSW01_01840 0.80 -0.0
370,231 - CSW01_01840 0.81 +0.5
370,244 - CSW01_01840 0.82 +0.4
370,244 - CSW01_01840 0.82 -0.9
370,256 + CSW01_01840 0.83 +0.7
370,260 - CSW01_01840 0.83 +1.2
370,366 + +0.1
370,424 - +0.5
370,470 + -0.7
370,533 - +2.1
370,665 - CSW01_01845 0.12 +0.3
370,729 + CSW01_01845 0.18 -1.0
370,784 - CSW01_01845 0.22 -2.4
370,807 + CSW01_01845 0.24 -0.9
370,812 + CSW01_01845 0.24 -0.8
370,812 + CSW01_01845 0.24 -1.1
370,812 + CSW01_01845 0.24 -0.8
370,812 + CSW01_01845 0.24 -1.1
370,815 - CSW01_01845 0.25 -0.3
370,820 - CSW01_01845 0.25 +0.2
370,820 - CSW01_01845 0.25 -1.2
370,820 - CSW01_01845 0.25 +1.7
370,859 - CSW01_01845 0.28 -0.9
370,924 + CSW01_01845 0.34 -0.4
370,925 - CSW01_01845 0.34 -1.3
370,932 - CSW01_01845 0.35 +1.1
370,932 - CSW01_01845 0.35 -0.9
370,932 - CSW01_01845 0.35 -0.6
370,932 - CSW01_01845 0.35 -1.3
370,932 - CSW01_01845 0.35 -0.8
370,955 + CSW01_01845 0.37 -1.6
370,975 - CSW01_01845 0.38 -0.9
370,977 + CSW01_01845 0.38 -0.9
371,055 - CSW01_01845 0.45 -2.1
371,081 - CSW01_01845 0.47 -1.5
371,146 + CSW01_01845 0.53 +0.4
371,201 + CSW01_01845 0.57 -0.7
371,221 - CSW01_01845 0.59 +0.7
371,298 + CSW01_01845 0.65 -1.5
371,333 - CSW01_01845 0.68 -0.7
371,333 - CSW01_01845 0.68 -1.1
371,363 + CSW01_01845 0.71 +0.3
371,432 + CSW01_01845 0.77 -0.9
371,440 - CSW01_01845 0.77 -2.5
371,490 + CSW01_01845 0.82 -0.5
371,498 - CSW01_01845 0.82 +0.4
371,668 + -1.9
371,683 + -0.7
371,691 + -0.6
371,691 + -1.1
371,699 - -0.7
371,699 - +0.2
371,699 - -0.3
371,699 - -0.2
371,733 + +0.7
371,743 + -1.6
371,751 - -0.1
371,761 - -0.7
371,884 + CSW01_01850 0.18 -0.6
371,890 - CSW01_01850 0.18 -0.9
371,901 + CSW01_01850 0.19 +1.7
371,901 + CSW01_01850 0.19 -0.8
372,060 + CSW01_01850 0.36 -1.7
372,114 + CSW01_01850 0.41 -0.3
372,214 + CSW01_01850 0.51 +0.2
372,261 - CSW01_01850 0.56 -0.3
372,389 + CSW01_01850 0.69 -1.3
372,464 - CSW01_01850 0.77 -0.3
372,479 - CSW01_01850 0.78 -1.2
372,632 + +0.0
372,648 - -0.5
372,704 - +0.5

Or see this region's nucleotide sequence