Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01470 and CSW01_01475 are separated by 153 nucleotides CSW01_01475 and CSW01_01480 overlap by 4 nucleotides CSW01_01480 and CSW01_01485 are separated by 76 nucleotides
CSW01_01470: CSW01_01470 - permease, at 293,577 to 294,953
_01470
CSW01_01475: CSW01_01475 - gluconate kinase, at 295,107 to 295,622
_01475
CSW01_01480: CSW01_01480 - phosphogluconate dehydratase, at 295,619 to 297,415
_01480
CSW01_01485: CSW01_01485 - transcriptional regulator, at 297,492 to 298,490
_01485
Position (kb) 295
296
297
298 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 294.692 kb on - strand, within CSW01_01470 at 294.724 kb on - strand, within CSW01_01470 at 294.739 kb on + strand, within CSW01_01470 at 294.817 kb on + strand at 294.934 kb on - strand at 294.968 kb on + strand at 295.099 kb on - strand at 295.136 kb on + strand at 295.221 kb on - strand, within CSW01_01475 at 295.221 kb on - strand, within CSW01_01475 at 295.245 kb on + strand, within CSW01_01475 at 295.293 kb on - strand, within CSW01_01475 at 295.347 kb on - strand, within CSW01_01475 at 295.349 kb on - strand, within CSW01_01475 at 295.426 kb on + strand, within CSW01_01475 at 295.461 kb on + strand, within CSW01_01475 at 295.461 kb on + strand, within CSW01_01475 at 295.469 kb on - strand, within CSW01_01475 at 295.469 kb on - strand, within CSW01_01475 at 295.484 kb on + strand, within CSW01_01475 at 295.509 kb on + strand, within CSW01_01475 at 295.510 kb on + strand, within CSW01_01475 at 295.510 kb on + strand, within CSW01_01475 at 295.510 kb on - strand, within CSW01_01475 at 295.518 kb on - strand, within CSW01_01475 at 295.518 kb on - strand, within CSW01_01475 at 295.520 kb on + strand, within CSW01_01475 at 295.575 kb on + strand at 295.575 kb on + strand at 295.575 kb on + strand at 295.575 kb on + strand at 295.575 kb on + strand at 295.575 kb on + strand at 295.580 kb on + strand at 295.583 kb on - strand at 295.605 kb on + strand at 295.615 kb on - strand at 295.641 kb on + strand at 295.663 kb on + strand at 295.709 kb on - strand at 295.726 kb on + strand at 295.734 kb on + strand at 295.751 kb on + strand at 295.751 kb on + strand at 295.759 kb on - strand at 295.818 kb on + strand, within CSW01_01480 at 295.847 kb on + strand, within CSW01_01480 at 295.860 kb on - strand, within CSW01_01480 at 295.861 kb on + strand, within CSW01_01480 at 295.874 kb on - strand, within CSW01_01480 at 295.876 kb on + strand, within CSW01_01480 at 295.879 kb on - strand, within CSW01_01480 at 295.879 kb on - strand, within CSW01_01480 at 295.881 kb on + strand, within CSW01_01480 at 295.881 kb on + strand, within CSW01_01480 at 295.881 kb on + strand, within CSW01_01480 at 295.881 kb on + strand, within CSW01_01480 at 295.881 kb on + strand, within CSW01_01480 at 295.881 kb on + strand, within CSW01_01480 at 295.881 kb on + strand, within CSW01_01480 at 295.884 kb on - strand, within CSW01_01480 at 295.884 kb on - strand, within CSW01_01480 at 295.889 kb on - strand, within CSW01_01480 at 295.889 kb on - strand, within CSW01_01480 at 295.889 kb on - strand, within CSW01_01480 at 295.889 kb on - strand, within CSW01_01480 at 295.889 kb on - strand, within CSW01_01480 at 295.889 kb on - strand, within CSW01_01480 at 295.889 kb on - strand, within CSW01_01480 at 295.889 kb on - strand, within CSW01_01480 at 295.909 kb on - strand, within CSW01_01480 at 295.915 kb on + strand, within CSW01_01480 at 295.964 kb on - strand, within CSW01_01480 at 295.973 kb on + strand, within CSW01_01480 at 296.018 kb on + strand, within CSW01_01480 at 296.043 kb on + strand, within CSW01_01480 at 296.051 kb on - strand, within CSW01_01480 at 296.051 kb on - strand, within CSW01_01480 at 296.127 kb on + strand, within CSW01_01480 at 296.127 kb on - strand, within CSW01_01480 at 296.227 kb on + strand, within CSW01_01480 at 296.227 kb on - strand, within CSW01_01480 at 296.235 kb on - strand, within CSW01_01480 at 296.242 kb on + strand, within CSW01_01480 at 296.242 kb on + strand, within CSW01_01480 at 296.250 kb on - strand, within CSW01_01480 at 296.250 kb on - strand, within CSW01_01480 at 296.250 kb on - strand, within CSW01_01480 at 296.254 kb on + strand, within CSW01_01480 at 296.254 kb on + strand, within CSW01_01480 at 296.260 kb on + strand, within CSW01_01480 at 296.260 kb on + strand, within CSW01_01480 at 296.262 kb on - strand, within CSW01_01480 at 296.280 kb on + strand, within CSW01_01480 at 296.333 kb on + strand, within CSW01_01480 at 296.333 kb on + strand, within CSW01_01480 at 296.333 kb on + strand, within CSW01_01480 at 296.336 kb on - strand, within CSW01_01480 at 296.433 kb on + strand, within CSW01_01480 at 296.434 kb on - strand, within CSW01_01480 at 296.438 kb on + strand, within CSW01_01480 at 296.441 kb on - strand, within CSW01_01480 at 296.443 kb on + strand, within CSW01_01480 at 296.446 kb on - strand, within CSW01_01480 at 296.451 kb on - strand, within CSW01_01480 at 296.463 kb on - strand, within CSW01_01480 at 296.463 kb on - strand, within CSW01_01480 at 296.506 kb on + strand, within CSW01_01480 at 296.509 kb on - strand, within CSW01_01480 at 296.520 kb on + strand, within CSW01_01480 at 296.524 kb on + strand, within CSW01_01480 at 296.534 kb on + strand, within CSW01_01480 at 296.534 kb on + strand, within CSW01_01480 at 296.534 kb on + strand, within CSW01_01480 at 296.542 kb on - strand, within CSW01_01480 at 296.542 kb on - strand, within CSW01_01480 at 296.589 kb on + strand, within CSW01_01480 at 296.589 kb on + strand, within CSW01_01480 at 296.597 kb on - strand, within CSW01_01480 at 296.626 kb on + strand, within CSW01_01480 at 296.633 kb on - strand, within CSW01_01480 at 296.640 kb on + strand, within CSW01_01480 at 296.643 kb on - strand, within CSW01_01480 at 296.648 kb on + strand, within CSW01_01480 at 296.667 kb on - strand, within CSW01_01480 at 296.669 kb on - strand, within CSW01_01480 at 296.684 kb on + strand, within CSW01_01480 at 296.706 kb on + strand, within CSW01_01480 at 296.729 kb on - strand, within CSW01_01480 at 296.749 kb on + strand, within CSW01_01480 at 296.757 kb on - strand, within CSW01_01480 at 296.757 kb on - strand, within CSW01_01480 at 296.757 kb on - strand, within CSW01_01480 at 296.796 kb on + strand, within CSW01_01480 at 296.796 kb on + strand, within CSW01_01480 at 296.796 kb on + strand, within CSW01_01480 at 296.804 kb on - strand, within CSW01_01480 at 296.806 kb on + strand, within CSW01_01480 at 296.985 kb on - strand, within CSW01_01480 at 296.991 kb on + strand, within CSW01_01480 at 296.999 kb on - strand, within CSW01_01480 at 297.013 kb on + strand, within CSW01_01480 at 297.032 kb on - strand, within CSW01_01480 at 297.032 kb on - strand, within CSW01_01480 at 297.043 kb on + strand, within CSW01_01480 at 297.066 kb on + strand, within CSW01_01480 at 297.066 kb on + strand, within CSW01_01480 at 297.076 kb on + strand, within CSW01_01480 at 297.084 kb on - strand, within CSW01_01480 at 297.092 kb on + strand, within CSW01_01480 at 297.118 kb on + strand, within CSW01_01480 at 297.141 kb on - strand, within CSW01_01480 at 297.141 kb on - strand, within CSW01_01480 at 297.141 kb on - strand, within CSW01_01480 at 297.221 kb on + strand, within CSW01_01480 at 297.253 kb on + strand at 297.280 kb on - strand at 297.280 kb on - strand at 297.280 kb on - strand at 297.280 kb on - strand at 297.340 kb on - strand at 297.363 kb on - strand at 297.410 kb on - strand at 297.418 kb on - strand at 297.433 kb on + strand at 297.466 kb on + strand at 297.473 kb on + strand at 297.474 kb on - strand at 297.478 kb on + strand at 297.481 kb on + strand at 297.483 kb on + strand at 297.483 kb on + strand at 297.484 kb on + strand at 297.488 kb on + strand at 297.489 kb on + strand at 297.491 kb on + strand at 297.491 kb on - strand at 297.497 kb on - strand at 297.509 kb on - strand at 297.556 kb on + strand at 297.681 kb on + strand, within CSW01_01485 at 297.689 kb on - strand, within CSW01_01485 at 297.764 kb on - strand, within CSW01_01485 at 297.764 kb on - strand, within CSW01_01485 at 297.765 kb on + strand, within CSW01_01485 at 297.811 kb on - strand, within CSW01_01485 at 297.828 kb on - strand, within CSW01_01485 at 297.860 kb on + strand, within CSW01_01485 at 297.860 kb on + strand, within CSW01_01485 at 297.910 kb on - strand, within CSW01_01485 at 297.920 kb on + strand, within CSW01_01485 at 298.037 kb on + strand, within CSW01_01485 at 298.061 kb on + strand, within CSW01_01485 at 298.061 kb on + strand, within CSW01_01485 at 298.061 kb on + strand, within CSW01_01485 at 298.061 kb on + strand, within CSW01_01485 at 298.069 kb on - strand, within CSW01_01485 at 298.069 kb on - strand, within CSW01_01485 at 298.069 kb on - strand, within CSW01_01485 at 298.115 kb on + strand, within CSW01_01485 at 298.115 kb on + strand, within CSW01_01485 at 298.123 kb on - strand, within CSW01_01485 at 298.123 kb on - strand, within CSW01_01485 at 298.123 kb on - strand, within CSW01_01485 at 298.130 kb on + strand, within CSW01_01485 at 298.224 kb on - strand, within CSW01_01485 at 298.229 kb on + strand, within CSW01_01485 at 298.237 kb on - strand, within CSW01_01485 at 298.237 kb on - strand, within CSW01_01485 at 298.353 kb on - strand, within CSW01_01485 at 298.377 kb on - strand, within CSW01_01485 at 298.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 294,692 - CSW01_01470 0.81 -0.2 294,724 - CSW01_01470 0.83 +0.1 294,739 + CSW01_01470 0.84 +0.0 294,817 + +0.9 294,934 - -0.8 294,968 + +0.6 295,099 - -0.7 295,136 + +0.5 295,221 - CSW01_01475 0.22 -0.1 295,221 - CSW01_01475 0.22 +1.1 295,245 + CSW01_01475 0.27 +0.1 295,293 - CSW01_01475 0.36 +0.1 295,347 - CSW01_01475 0.47 -0.4 295,349 - CSW01_01475 0.47 -0.1 295,426 + CSW01_01475 0.62 +0.4 295,461 + CSW01_01475 0.69 +2.0 295,461 + CSW01_01475 0.69 +0.4 295,469 - CSW01_01475 0.70 -0.6 295,469 - CSW01_01475 0.70 +1.0 295,484 + CSW01_01475 0.73 +0.2 295,509 + CSW01_01475 0.78 +0.4 295,510 + CSW01_01475 0.78 -0.6 295,510 + CSW01_01475 0.78 +0.4 295,510 - CSW01_01475 0.78 -0.6 295,518 - CSW01_01475 0.80 -0.1 295,518 - CSW01_01475 0.80 +0.2 295,520 + CSW01_01475 0.80 +0.1 295,575 + -0.1 295,575 + -1.3 295,575 + -0.3 295,575 + +0.6 295,575 + +0.2 295,575 + +0.8 295,580 + +0.2 295,583 - +1.3 295,605 + +0.0 295,615 - +0.2 295,641 + -0.4 295,663 + -0.0 295,709 - +0.1 295,726 + +1.8 295,734 + +0.8 295,751 + +0.4 295,751 + +1.1 295,759 - +0.5 295,818 + CSW01_01480 0.11 -0.2 295,847 + CSW01_01480 0.13 -0.1 295,860 - CSW01_01480 0.13 +1.2 295,861 + CSW01_01480 0.13 -1.1 295,874 - CSW01_01480 0.14 +0.9 295,876 + CSW01_01480 0.14 -0.0 295,879 - CSW01_01480 0.14 +0.3 295,879 - CSW01_01480 0.14 -0.0 295,881 + CSW01_01480 0.15 +0.1 295,881 + CSW01_01480 0.15 -0.4 295,881 + CSW01_01480 0.15 -0.8 295,881 + CSW01_01480 0.15 +0.1 295,881 + CSW01_01480 0.15 -0.9 295,881 + CSW01_01480 0.15 +0.9 295,881 + CSW01_01480 0.15 +0.2 295,884 - CSW01_01480 0.15 -0.3 295,884 - CSW01_01480 0.15 +0.0 295,889 - CSW01_01480 0.15 -0.1 295,889 - CSW01_01480 0.15 -1.2 295,889 - CSW01_01480 0.15 +0.8 295,889 - CSW01_01480 0.15 -0.3 295,889 - CSW01_01480 0.15 +0.9 295,889 - CSW01_01480 0.15 -0.8 295,889 - CSW01_01480 0.15 +0.0 295,889 - CSW01_01480 0.15 -0.3 295,909 - CSW01_01480 0.16 +0.4 295,915 + CSW01_01480 0.16 +0.7 295,964 - CSW01_01480 0.19 -0.7 295,973 + CSW01_01480 0.20 -0.7 296,018 + CSW01_01480 0.22 -0.5 296,043 + CSW01_01480 0.24 +0.7 296,051 - CSW01_01480 0.24 +1.3 296,051 - CSW01_01480 0.24 +0.1 296,127 + CSW01_01480 0.28 +0.1 296,127 - CSW01_01480 0.28 +0.9 296,227 + CSW01_01480 0.34 -0.9 296,227 - CSW01_01480 0.34 +0.9 296,235 - CSW01_01480 0.34 -0.2 296,242 + CSW01_01480 0.35 +0.7 296,242 + CSW01_01480 0.35 -0.6 296,250 - CSW01_01480 0.35 +0.6 296,250 - CSW01_01480 0.35 -0.4 296,250 - CSW01_01480 0.35 -0.5 296,254 + CSW01_01480 0.35 +0.3 296,254 + CSW01_01480 0.35 -0.3 296,260 + CSW01_01480 0.36 +0.3 296,260 + CSW01_01480 0.36 +2.7 296,262 - CSW01_01480 0.36 -0.2 296,280 + CSW01_01480 0.37 +1.5 296,333 + CSW01_01480 0.40 -0.4 296,333 + CSW01_01480 0.40 +0.8 296,333 + CSW01_01480 0.40 +2.1 296,336 - CSW01_01480 0.40 -0.3 296,433 + CSW01_01480 0.45 +0.1 296,434 - CSW01_01480 0.45 -0.9 296,438 + CSW01_01480 0.46 -0.4 296,441 - CSW01_01480 0.46 -1.1 296,443 + CSW01_01480 0.46 -0.3 296,446 - CSW01_01480 0.46 -0.3 296,451 - CSW01_01480 0.46 +0.1 296,463 - CSW01_01480 0.47 -0.7 296,463 - CSW01_01480 0.47 +0.2 296,506 + CSW01_01480 0.49 -1.8 296,509 - CSW01_01480 0.50 -0.6 296,520 + CSW01_01480 0.50 -0.6 296,524 + CSW01_01480 0.50 -0.3 296,534 + CSW01_01480 0.51 -0.3 296,534 + CSW01_01480 0.51 -0.2 296,534 + CSW01_01480 0.51 +0.1 296,542 - CSW01_01480 0.51 +2.1 296,542 - CSW01_01480 0.51 -0.2 296,589 + CSW01_01480 0.54 -0.8 296,589 + CSW01_01480 0.54 +0.3 296,597 - CSW01_01480 0.54 +0.4 296,626 + CSW01_01480 0.56 -0.0 296,633 - CSW01_01480 0.56 -0.1 296,640 + CSW01_01480 0.57 +0.1 296,643 - CSW01_01480 0.57 +0.9 296,648 + CSW01_01480 0.57 -1.2 296,667 - CSW01_01480 0.58 +0.2 296,669 - CSW01_01480 0.58 +0.5 296,684 + CSW01_01480 0.59 +0.4 296,706 + CSW01_01480 0.60 -0.1 296,729 - CSW01_01480 0.62 -0.1 296,749 + CSW01_01480 0.63 -0.8 296,757 - CSW01_01480 0.63 +0.5 296,757 - CSW01_01480 0.63 -0.0 296,757 - CSW01_01480 0.63 -0.2 296,796 + CSW01_01480 0.65 -0.2 296,796 + CSW01_01480 0.65 -0.2 296,796 + CSW01_01480 0.65 +0.4 296,804 - CSW01_01480 0.66 -0.8 296,806 + CSW01_01480 0.66 -1.1 296,985 - CSW01_01480 0.76 -0.6 296,991 + CSW01_01480 0.76 -0.4 296,999 - CSW01_01480 0.77 +0.3 297,013 + CSW01_01480 0.78 +0.1 297,032 - CSW01_01480 0.79 -0.2 297,032 - CSW01_01480 0.79 +0.1 297,043 + CSW01_01480 0.79 +0.3 297,066 + CSW01_01480 0.81 -0.3 297,066 + CSW01_01480 0.81 +1.2 297,076 + CSW01_01480 0.81 -0.1 297,084 - CSW01_01480 0.82 +0.6 297,092 + CSW01_01480 0.82 -0.8 297,118 + CSW01_01480 0.83 +0.0 297,141 - CSW01_01480 0.85 +0.5 297,141 - CSW01_01480 0.85 +1.4 297,141 - CSW01_01480 0.85 -0.6 297,221 + CSW01_01480 0.89 -0.7 297,253 + +0.0 297,280 - -0.4 297,280 - +0.2 297,280 - -0.2 297,280 - -1.1 297,340 - -0.1 297,363 - -1.3 297,410 - +0.4 297,418 - -0.2 297,433 + -0.4 297,466 + +0.7 297,473 + -0.1 297,474 - -0.6 297,478 + -1.1 297,481 + +3.5 297,483 + +0.1 297,483 + -0.1 297,484 + -0.5 297,488 + -0.1 297,489 + +1.4 297,491 + +0.9 297,491 - +0.2 297,497 - -0.1 297,509 - +1.1 297,556 + +0.7 297,681 + CSW01_01485 0.19 +0.7 297,689 - CSW01_01485 0.20 +0.7 297,764 - CSW01_01485 0.27 -0.9 297,764 - CSW01_01485 0.27 +0.7 297,765 + CSW01_01485 0.27 +0.7 297,811 - CSW01_01485 0.32 -0.9 297,828 - CSW01_01485 0.34 +1.7 297,860 + CSW01_01485 0.37 +0.7 297,860 + CSW01_01485 0.37 +0.7 297,910 - CSW01_01485 0.42 +0.7 297,920 + CSW01_01485 0.43 -1.3 298,037 + CSW01_01485 0.55 +1.7 298,061 + CSW01_01485 0.57 +0.7 298,061 + CSW01_01485 0.57 +0.7 298,061 + CSW01_01485 0.57 +1.7 298,061 + CSW01_01485 0.57 +0.7 298,069 - CSW01_01485 0.58 -0.3 298,069 - CSW01_01485 0.58 +0.7 298,069 - CSW01_01485 0.58 +0.7 298,115 + CSW01_01485 0.62 -0.9 298,115 + CSW01_01485 0.62 +0.7 298,123 - CSW01_01485 0.63 -0.3 298,123 - CSW01_01485 0.63 +0.7 298,123 - CSW01_01485 0.63 +1.7 298,130 + CSW01_01485 0.64 -0.3 298,224 - CSW01_01485 0.73 +0.7 298,229 + CSW01_01485 0.74 +0.7 298,237 - CSW01_01485 0.75 -0.9 298,237 - CSW01_01485 0.75 +0.7 298,353 - CSW01_01485 0.86 +0.7 298,377 - CSW01_01485 0.89 +0.7 298,405 - +1.1
Or see this region's nucleotide sequence