Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01420

Experiment: LB_Anaerobic_18HR_ZN20B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01415 and CSW01_01420 are separated by 58 nucleotidesCSW01_01420 and CSW01_01425 are separated by 75 nucleotidesCSW01_01425 and CSW01_01430 are separated by 30 nucleotidesCSW01_01430 and CSW01_01435 are separated by 226 nucleotides CSW01_01415: CSW01_01415 - phosphoribosylamine--glycine ligase, at 278,279 to 279,568 _01415 CSW01_01420: CSW01_01420 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 279,627 to 281,219 _01420 CSW01_01425: CSW01_01425 - phosphoribosylamine--glycine ligase, at 281,295 to 281,474 _01425 CSW01_01430: CSW01_01430 - Zn(2+)-responsive transcriptional regulator, at 281,505 to 281,906 _01430 CSW01_01435: CSW01_01435 - transcriptional regulator CadC, at 282,133 to 283,692 _01435 Position (kb) 279 280 281 282Strain fitness (log2 ratio) -2 -1 0 1 2at 278.631 kb on + strand, within CSW01_01415at 278.631 kb on + strand, within CSW01_01415at 278.639 kb on - strand, within CSW01_01415at 278.639 kb on - strand, within CSW01_01415at 278.639 kb on - strand, within CSW01_01415at 278.641 kb on + strand, within CSW01_01415at 278.705 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.759 kb on + strand, within CSW01_01415at 278.767 kb on - strand, within CSW01_01415at 278.769 kb on + strand, within CSW01_01415at 278.769 kb on + strand, within CSW01_01415at 278.775 kb on + strand, within CSW01_01415at 278.811 kb on - strand, within CSW01_01415at 278.848 kb on + strand, within CSW01_01415at 278.877 kb on + strand, within CSW01_01415at 278.891 kb on + strand, within CSW01_01415at 278.899 kb on - strand, within CSW01_01415at 278.912 kb on + strand, within CSW01_01415at 278.912 kb on + strand, within CSW01_01415at 278.920 kb on - strand, within CSW01_01415at 278.920 kb on - strand, within CSW01_01415at 279.016 kb on + strand, within CSW01_01415at 279.100 kb on + strand, within CSW01_01415at 279.126 kb on - strand, within CSW01_01415at 279.126 kb on - strand, within CSW01_01415at 279.126 kb on - strand, within CSW01_01415at 279.126 kb on - strand, within CSW01_01415at 279.173 kb on - strand, within CSW01_01415at 279.178 kb on - strand, within CSW01_01415at 279.178 kb on - strand, within CSW01_01415at 279.178 kb on - strand, within CSW01_01415at 279.221 kb on + strand, within CSW01_01415at 279.221 kb on - strand, within CSW01_01415at 279.227 kb on - strand, within CSW01_01415at 279.253 kb on + strand, within CSW01_01415at 279.266 kb on + strand, within CSW01_01415at 279.278 kb on + strand, within CSW01_01415at 279.286 kb on - strand, within CSW01_01415at 279.286 kb on - strand, within CSW01_01415at 279.338 kb on + strand, within CSW01_01415at 279.360 kb on + strand, within CSW01_01415at 279.378 kb on + strand, within CSW01_01415at 279.442 kb on - strandat 279.483 kb on + strandat 279.497 kb on - strandat 279.578 kb on - strandat 279.607 kb on + strandat 279.672 kb on - strandat 279.695 kb on + strandat 279.703 kb on - strandat 279.703 kb on - strandat 279.703 kb on - strandat 279.725 kb on + strandat 279.743 kb on - strandat 279.757 kb on + strandat 279.763 kb on - strandat 279.765 kb on - strandat 279.805 kb on - strand, within CSW01_01420at 279.859 kb on + strand, within CSW01_01420at 279.868 kb on - strand, within CSW01_01420at 279.873 kb on + strand, within CSW01_01420at 279.873 kb on + strand, within CSW01_01420at 279.873 kb on + strand, within CSW01_01420at 279.873 kb on + strand, within CSW01_01420at 279.881 kb on - strand, within CSW01_01420at 279.881 kb on - strand, within CSW01_01420at 279.960 kb on + strand, within CSW01_01420at 279.960 kb on + strand, within CSW01_01420at 279.965 kb on + strand, within CSW01_01420at 279.968 kb on - strand, within CSW01_01420at 280.000 kb on - strand, within CSW01_01420at 280.035 kb on + strand, within CSW01_01420at 280.062 kb on + strand, within CSW01_01420at 280.070 kb on - strand, within CSW01_01420at 280.201 kb on - strand, within CSW01_01420at 280.290 kb on - strand, within CSW01_01420at 280.302 kb on + strand, within CSW01_01420at 280.327 kb on - strand, within CSW01_01420at 280.331 kb on + strand, within CSW01_01420at 280.331 kb on + strand, within CSW01_01420at 280.331 kb on + strand, within CSW01_01420at 280.339 kb on + strand, within CSW01_01420at 280.339 kb on - strand, within CSW01_01420at 280.339 kb on - strand, within CSW01_01420at 280.339 kb on - strand, within CSW01_01420at 280.347 kb on - strand, within CSW01_01420at 280.347 kb on - strand, within CSW01_01420at 280.388 kb on - strand, within CSW01_01420at 280.398 kb on + strand, within CSW01_01420at 280.406 kb on - strand, within CSW01_01420at 280.406 kb on - strand, within CSW01_01420at 280.506 kb on - strand, within CSW01_01420at 280.590 kb on + strand, within CSW01_01420at 280.592 kb on + strand, within CSW01_01420at 280.600 kb on - strand, within CSW01_01420at 280.623 kb on + strand, within CSW01_01420at 280.623 kb on + strand, within CSW01_01420at 280.631 kb on - strand, within CSW01_01420at 280.705 kb on - strand, within CSW01_01420at 280.717 kb on - strand, within CSW01_01420at 280.724 kb on - strand, within CSW01_01420at 280.725 kb on + strand, within CSW01_01420at 280.785 kb on + strand, within CSW01_01420at 280.793 kb on - strand, within CSW01_01420at 280.808 kb on - strand, within CSW01_01420at 280.855 kb on + strand, within CSW01_01420at 280.900 kb on + strand, within CSW01_01420at 280.900 kb on + strand, within CSW01_01420at 280.900 kb on + strand, within CSW01_01420at 280.900 kb on + strand, within CSW01_01420at 280.908 kb on - strand, within CSW01_01420at 280.908 kb on - strand, within CSW01_01420at 280.967 kb on + strand, within CSW01_01420at 280.977 kb on + strand, within CSW01_01420at 280.985 kb on - strand, within CSW01_01420at 280.997 kb on - strand, within CSW01_01420at 281.009 kb on + strand, within CSW01_01420at 281.019 kb on - strand, within CSW01_01420at 281.086 kb on + strandat 281.113 kb on - strandat 281.120 kb on + strandat 281.120 kb on + strandat 281.120 kb on + strandat 281.120 kb on + strandat 281.128 kb on - strandat 281.189 kb on - strandat 281.203 kb on + strandat 281.203 kb on + strandat 281.254 kb on + strandat 281.264 kb on - strandat 281.269 kb on + strandat 281.269 kb on + strandat 281.269 kb on - strandat 281.292 kb on + strandat 281.294 kb on - strandat 281.340 kb on - strand, within CSW01_01425at 281.486 kb on - strandat 281.523 kb on + strandat 281.679 kb on + strand, within CSW01_01430at 281.679 kb on + strand, within CSW01_01430at 281.686 kb on + strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.694 kb on - strand, within CSW01_01430at 281.696 kb on + strand, within CSW01_01430at 281.703 kb on - strand, within CSW01_01430at 281.733 kb on + strand, within CSW01_01430at 281.733 kb on + strand, within CSW01_01430at 281.743 kb on + strand, within CSW01_01430at 281.767 kb on + strand, within CSW01_01430at 281.767 kb on + strand, within CSW01_01430at 281.767 kb on + strand, within CSW01_01430at 281.775 kb on - strand, within CSW01_01430at 281.775 kb on - strand, within CSW01_01430at 281.775 kb on - strand, within CSW01_01430at 281.802 kb on + strand, within CSW01_01430at 281.817 kb on - strand, within CSW01_01430at 281.848 kb on + strand, within CSW01_01430at 281.848 kb on + strand, within CSW01_01430at 281.856 kb on - strand, within CSW01_01430at 282.067 kb on - strandat 282.160 kb on + strandat 282.173 kb on + strandat 282.174 kb on - strandat 282.181 kb on - strandat 282.183 kb on + strandat 282.202 kb on + strandat 282.210 kb on + strandat 282.210 kb on + strandat 282.210 kb on + strandat 282.210 kb on + strandat 282.210 kb on + strandat 282.215 kb on + strandat 282.218 kb on - strandat 282.218 kb on - strandat 282.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B
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278,631 + CSW01_01415 0.27 +0.2
278,631 + CSW01_01415 0.27 +1.5
278,639 - CSW01_01415 0.28 +0.3
278,639 - CSW01_01415 0.28 -1.0
278,639 - CSW01_01415 0.28 -1.0
278,641 + CSW01_01415 0.28 -0.4
278,705 + CSW01_01415 0.33 +0.1
278,759 + CSW01_01415 0.37 +0.3
278,759 + CSW01_01415 0.37 -0.5
278,759 + CSW01_01415 0.37 -0.9
278,759 + CSW01_01415 0.37 +0.3
278,759 + CSW01_01415 0.37 -0.5
278,767 - CSW01_01415 0.38 -0.1
278,769 + CSW01_01415 0.38 -0.3
278,769 + CSW01_01415 0.38 +0.2
278,775 + CSW01_01415 0.38 +0.3
278,811 - CSW01_01415 0.41 -0.8
278,848 + CSW01_01415 0.44 -0.4
278,877 + CSW01_01415 0.46 +0.6
278,891 + CSW01_01415 0.47 +0.6
278,899 - CSW01_01415 0.48 +0.1
278,912 + CSW01_01415 0.49 -1.8
278,912 + CSW01_01415 0.49 -1.3
278,920 - CSW01_01415 0.50 +0.7
278,920 - CSW01_01415 0.50 -0.1
279,016 + CSW01_01415 0.57 +1.1
279,100 + CSW01_01415 0.64 -0.0
279,126 - CSW01_01415 0.66 +0.0
279,126 - CSW01_01415 0.66 +1.1
279,126 - CSW01_01415 0.66 -1.8
279,126 - CSW01_01415 0.66 +2.2
279,173 - CSW01_01415 0.69 -1.1
279,178 - CSW01_01415 0.70 +0.1
279,178 - CSW01_01415 0.70 -0.5
279,178 - CSW01_01415 0.70 +0.3
279,221 + CSW01_01415 0.73 -0.1
279,221 - CSW01_01415 0.73 -0.3
279,227 - CSW01_01415 0.73 -1.1
279,253 + CSW01_01415 0.76 -0.2
279,266 + CSW01_01415 0.77 +0.4
279,278 + CSW01_01415 0.77 +0.1
279,286 - CSW01_01415 0.78 -0.6
279,286 - CSW01_01415 0.78 -0.3
279,338 + CSW01_01415 0.82 +0.2
279,360 + CSW01_01415 0.84 +0.3
279,378 + CSW01_01415 0.85 +0.4
279,442 - -0.3
279,483 + +0.7
279,497 - -0.5
279,578 - +0.2
279,607 + -0.4
279,672 - +0.3
279,695 + +0.3
279,703 - -0.2
279,703 - -0.2
279,703 - +0.4
279,725 + -0.2
279,743 - -0.3
279,757 + +0.9
279,763 - -1.7
279,765 - -0.8
279,805 - CSW01_01420 0.11 +0.4
279,859 + CSW01_01420 0.15 -0.8
279,868 - CSW01_01420 0.15 -1.1
279,873 + CSW01_01420 0.15 +0.8
279,873 + CSW01_01420 0.15 -0.2
279,873 + CSW01_01420 0.15 -0.3
279,873 + CSW01_01420 0.15 -0.5
279,881 - CSW01_01420 0.16 -0.3
279,881 - CSW01_01420 0.16 -0.3
279,960 + CSW01_01420 0.21 -1.0
279,960 + CSW01_01420 0.21 +0.4
279,965 + CSW01_01420 0.21 +0.5
279,968 - CSW01_01420 0.21 -0.1
280,000 - CSW01_01420 0.23 -0.2
280,035 + CSW01_01420 0.26 +0.6
280,062 + CSW01_01420 0.27 -0.2
280,070 - CSW01_01420 0.28 -0.7
280,201 - CSW01_01420 0.36 +0.2
280,290 - CSW01_01420 0.42 -0.4
280,302 + CSW01_01420 0.42 +0.8
280,327 - CSW01_01420 0.44 -0.0
280,331 + CSW01_01420 0.44 -0.2
280,331 + CSW01_01420 0.44 +0.2
280,331 + CSW01_01420 0.44 -2.2
280,339 + CSW01_01420 0.45 -0.1
280,339 - CSW01_01420 0.45 -0.2
280,339 - CSW01_01420 0.45 +0.2
280,339 - CSW01_01420 0.45 -0.0
280,347 - CSW01_01420 0.45 -0.3
280,347 - CSW01_01420 0.45 -1.8
280,388 - CSW01_01420 0.48 +0.1
280,398 + CSW01_01420 0.48 -0.1
280,406 - CSW01_01420 0.49 -1.5
280,406 - CSW01_01420 0.49 -0.4
280,506 - CSW01_01420 0.55 -0.7
280,590 + CSW01_01420 0.60 -0.3
280,592 + CSW01_01420 0.61 +0.7
280,600 - CSW01_01420 0.61 -1.3
280,623 + CSW01_01420 0.63 +0.1
280,623 + CSW01_01420 0.63 -0.3
280,631 - CSW01_01420 0.63 +1.4
280,705 - CSW01_01420 0.68 +0.2
280,717 - CSW01_01420 0.68 +0.1
280,724 - CSW01_01420 0.69 -0.1
280,725 + CSW01_01420 0.69 -0.8
280,785 + CSW01_01420 0.73 +0.1
280,793 - CSW01_01420 0.73 +0.7
280,808 - CSW01_01420 0.74 -0.3
280,855 + CSW01_01420 0.77 -1.2
280,900 + CSW01_01420 0.80 +0.1
280,900 + CSW01_01420 0.80 -0.3
280,900 + CSW01_01420 0.80 -0.3
280,900 + CSW01_01420 0.80 +0.3
280,908 - CSW01_01420 0.80 +0.2
280,908 - CSW01_01420 0.80 +0.1
280,967 + CSW01_01420 0.84 +1.4
280,977 + CSW01_01420 0.85 +0.0
280,985 - CSW01_01420 0.85 -0.1
280,997 - CSW01_01420 0.86 -0.7
281,009 + CSW01_01420 0.87 -1.3
281,019 - CSW01_01420 0.87 +0.1
281,086 + -0.3
281,113 - +0.2
281,120 + +0.1
281,120 + +0.5
281,120 + +1.1
281,120 + -0.6
281,128 - -0.7
281,189 - +0.5
281,203 + -0.8
281,203 + -0.3
281,254 + +1.7
281,264 - -0.2
281,269 + -0.3
281,269 + -0.3
281,269 - -0.1
281,292 + -0.1
281,294 - -0.3
281,340 - CSW01_01425 0.25 -0.2
281,486 - -0.0
281,523 + -0.3
281,679 + CSW01_01430 0.43 -0.3
281,679 + CSW01_01430 0.43 +0.7
281,686 + CSW01_01430 0.45 +0.5
281,694 - CSW01_01430 0.47 +0.6
281,694 - CSW01_01430 0.47 -0.7
281,694 - CSW01_01430 0.47 +0.0
281,694 - CSW01_01430 0.47 +0.1
281,694 - CSW01_01430 0.47 -0.7
281,696 + CSW01_01430 0.48 +0.2
281,703 - CSW01_01430 0.49 +0.6
281,733 + CSW01_01430 0.57 +0.3
281,733 + CSW01_01430 0.57 -0.4
281,743 + CSW01_01430 0.59 +1.1
281,767 + CSW01_01430 0.65 +0.2
281,767 + CSW01_01430 0.65 -1.4
281,767 + CSW01_01430 0.65 +1.2
281,775 - CSW01_01430 0.67 -0.5
281,775 - CSW01_01430 0.67 -0.3
281,775 - CSW01_01430 0.67 +0.1
281,802 + CSW01_01430 0.74 +0.3
281,817 - CSW01_01430 0.78 -0.3
281,848 + CSW01_01430 0.85 -0.0
281,848 + CSW01_01430 0.85 +0.5
281,856 - CSW01_01430 0.87 -0.1
282,067 - -0.4
282,160 + -0.4
282,173 + -0.5
282,174 - -1.1
282,181 - -1.3
282,183 + +0.2
282,202 + -0.5
282,210 + -0.8
282,210 + -0.8
282,210 + -0.7
282,210 + -0.6
282,210 + -0.2
282,215 + -0.9
282,218 - +0.1
282,218 - -1.2
282,218 - -0.6

Or see this region's nucleotide sequence