Experiment: LB_Anaerobic_18HR_ZN20B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00785 and CSW01_00790 are separated by 397 nucleotides CSW01_00790 and CSW01_00795 are separated by 72 nucleotides
CSW01_00785: CSW01_00785 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 143,864 to 144,973
_00785
CSW01_00790: CSW01_00790 - vitamin B12 transporter BtuB, at 145,371 to 147,206
_00790
CSW01_00795: CSW01_00795 - alkaline serine protease, at 147,279 to 148,886
_00795
Position (kb) 145
146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 144.435 kb on + strand, within CSW01_00785 at 144.435 kb on + strand, within CSW01_00785 at 144.443 kb on - strand, within CSW01_00785 at 144.443 kb on - strand, within CSW01_00785 at 144.454 kb on + strand, within CSW01_00785 at 144.455 kb on - strand, within CSW01_00785 at 144.526 kb on + strand, within CSW01_00785 at 144.526 kb on + strand, within CSW01_00785 at 144.527 kb on + strand, within CSW01_00785 at 144.535 kb on - strand, within CSW01_00785 at 144.535 kb on - strand, within CSW01_00785 at 144.553 kb on + strand, within CSW01_00785 at 144.561 kb on - strand, within CSW01_00785 at 144.592 kb on + strand, within CSW01_00785 at 144.593 kb on - strand, within CSW01_00785 at 144.651 kb on + strand, within CSW01_00785 at 144.651 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.673 kb on + strand, within CSW01_00785 at 144.678 kb on + strand, within CSW01_00785 at 144.681 kb on - strand, within CSW01_00785 at 144.681 kb on - strand, within CSW01_00785 at 144.681 kb on - strand, within CSW01_00785 at 144.681 kb on - strand, within CSW01_00785 at 144.753 kb on + strand, within CSW01_00785 at 144.868 kb on + strand at 144.868 kb on + strand at 144.874 kb on + strand at 144.879 kb on + strand at 144.887 kb on - strand at 144.887 kb on - strand at 144.929 kb on + strand at 144.936 kb on + strand at 144.954 kb on - strand at 144.954 kb on - strand at 145.071 kb on + strand at 145.071 kb on + strand at 145.071 kb on + strand at 145.071 kb on + strand at 145.077 kb on + strand at 145.079 kb on - strand at 145.079 kb on - strand at 145.079 kb on - strand at 145.079 kb on - strand at 145.086 kb on - strand at 145.097 kb on + strand at 145.148 kb on + strand at 145.198 kb on + strand at 145.211 kb on - strand at 145.277 kb on + strand at 145.282 kb on + strand at 145.285 kb on - strand at 145.295 kb on + strand at 145.317 kb on + strand at 145.317 kb on + strand at 145.317 kb on + strand at 145.319 kb on + strand at 145.319 kb on + strand at 145.325 kb on - strand at 145.325 kb on - strand at 145.327 kb on + strand at 145.327 kb on - strand at 145.330 kb on + strand at 145.338 kb on - strand at 145.338 kb on - strand at 145.348 kb on - strand at 145.356 kb on + strand at 145.361 kb on + strand at 145.404 kb on - strand at 145.414 kb on + strand at 145.505 kb on - strand at 145.538 kb on - strand at 145.561 kb on - strand, within CSW01_00790 at 145.561 kb on - strand, within CSW01_00790 at 145.601 kb on - strand, within CSW01_00790 at 145.644 kb on + strand, within CSW01_00790 at 145.739 kb on + strand, within CSW01_00790 at 145.739 kb on + strand, within CSW01_00790 at 145.800 kb on - strand, within CSW01_00790 at 145.800 kb on - strand, within CSW01_00790 at 145.827 kb on + strand, within CSW01_00790 at 145.837 kb on + strand, within CSW01_00790 at 145.840 kb on + strand, within CSW01_00790 at 145.864 kb on + strand, within CSW01_00790 at 145.874 kb on + strand, within CSW01_00790 at 145.877 kb on - strand, within CSW01_00790 at 145.882 kb on - strand, within CSW01_00790 at 145.882 kb on - strand, within CSW01_00790 at 145.896 kb on - strand, within CSW01_00790 at 145.932 kb on + strand, within CSW01_00790 at 145.979 kb on - strand, within CSW01_00790 at 145.980 kb on - strand, within CSW01_00790 at 146.028 kb on - strand, within CSW01_00790 at 146.034 kb on - strand, within CSW01_00790 at 146.069 kb on + strand, within CSW01_00790 at 146.077 kb on - strand, within CSW01_00790 at 146.077 kb on - strand, within CSW01_00790 at 146.077 kb on - strand, within CSW01_00790 at 146.077 kb on - strand, within CSW01_00790 at 146.077 kb on - strand, within CSW01_00790 at 146.126 kb on + strand, within CSW01_00790 at 146.192 kb on + strand, within CSW01_00790 at 146.192 kb on + strand, within CSW01_00790 at 146.200 kb on - strand, within CSW01_00790 at 146.200 kb on - strand, within CSW01_00790 at 146.200 kb on - strand, within CSW01_00790 at 146.200 kb on - strand, within CSW01_00790 at 146.252 kb on + strand, within CSW01_00790 at 146.260 kb on - strand, within CSW01_00790 at 146.264 kb on + strand, within CSW01_00790 at 146.264 kb on + strand, within CSW01_00790 at 146.295 kb on - strand, within CSW01_00790 at 146.296 kb on + strand, within CSW01_00790 at 146.296 kb on + strand, within CSW01_00790 at 146.296 kb on + strand, within CSW01_00790 at 146.364 kb on + strand, within CSW01_00790 at 146.364 kb on + strand, within CSW01_00790 at 146.364 kb on + strand, within CSW01_00790 at 146.374 kb on + strand, within CSW01_00790 at 146.374 kb on + strand, within CSW01_00790 at 146.374 kb on + strand, within CSW01_00790 at 146.423 kb on + strand, within CSW01_00790 at 146.423 kb on + strand, within CSW01_00790 at 146.431 kb on - strand, within CSW01_00790 at 146.474 kb on + strand, within CSW01_00790 at 146.485 kb on + strand, within CSW01_00790 at 146.492 kb on - strand, within CSW01_00790 at 146.492 kb on - strand, within CSW01_00790 at 146.538 kb on + strand, within CSW01_00790 at 146.546 kb on - strand, within CSW01_00790 at 146.546 kb on - strand, within CSW01_00790 at 146.570 kb on - strand, within CSW01_00790 at 146.577 kb on - strand, within CSW01_00790 at 146.592 kb on + strand, within CSW01_00790 at 146.592 kb on + strand, within CSW01_00790 at 146.592 kb on + strand, within CSW01_00790 at 146.600 kb on - strand, within CSW01_00790 at 146.671 kb on + strand, within CSW01_00790 at 146.676 kb on + strand, within CSW01_00790 at 146.676 kb on + strand, within CSW01_00790 at 146.679 kb on - strand, within CSW01_00790 at 146.684 kb on - strand, within CSW01_00790 at 146.684 kb on - strand, within CSW01_00790 at 146.754 kb on + strand, within CSW01_00790 at 146.793 kb on + strand, within CSW01_00790 at 146.822 kb on - strand, within CSW01_00790 at 146.827 kb on - strand, within CSW01_00790 at 146.847 kb on + strand, within CSW01_00790 at 146.847 kb on + strand, within CSW01_00790 at 146.858 kb on + strand, within CSW01_00790 at 146.858 kb on + strand, within CSW01_00790 at 146.865 kb on - strand, within CSW01_00790 at 146.866 kb on - strand, within CSW01_00790 at 146.871 kb on - strand, within CSW01_00790 at 146.902 kb on + strand, within CSW01_00790 at 146.909 kb on + strand, within CSW01_00790 at 146.910 kb on - strand, within CSW01_00790 at 146.914 kb on + strand, within CSW01_00790 at 146.917 kb on - strand, within CSW01_00790 at 146.922 kb on - strand, within CSW01_00790 at 146.945 kb on + strand, within CSW01_00790 at 146.953 kb on - strand, within CSW01_00790 at 146.991 kb on + strand, within CSW01_00790 at 147.003 kb on + strand, within CSW01_00790 at 147.003 kb on + strand, within CSW01_00790 at 147.003 kb on + strand, within CSW01_00790 at 147.003 kb on + strand, within CSW01_00790 at 147.003 kb on + strand, within CSW01_00790 at 147.011 kb on + strand, within CSW01_00790 at 147.011 kb on - strand, within CSW01_00790 at 147.011 kb on - strand, within CSW01_00790 at 147.025 kb on - strand at 147.025 kb on - strand at 147.025 kb on - strand at 147.042 kb on - strand at 147.092 kb on + strand at 147.100 kb on - strand at 147.152 kb on + strand at 147.208 kb on - strand at 147.216 kb on - strand at 147.290 kb on + strand at 147.304 kb on + strand at 147.311 kb on + strand at 147.319 kb on + strand at 147.319 kb on + strand at 147.321 kb on + strand at 147.327 kb on - strand at 147.329 kb on + strand at 147.329 kb on + strand at 147.329 kb on + strand at 147.331 kb on + strand at 147.337 kb on - strand at 147.339 kb on - strand at 147.449 kb on + strand, within CSW01_00795 at 147.462 kb on - strand, within CSW01_00795 at 147.467 kb on - strand, within CSW01_00795 at 147.477 kb on - strand, within CSW01_00795 at 147.482 kb on - strand, within CSW01_00795 at 147.558 kb on - strand, within CSW01_00795 at 147.558 kb on - strand, within CSW01_00795 at 147.598 kb on + strand, within CSW01_00795 at 147.639 kb on - strand, within CSW01_00795 at 147.652 kb on + strand, within CSW01_00795 at 147.660 kb on - strand, within CSW01_00795 at 147.734 kb on + strand, within CSW01_00795 at 147.765 kb on + strand, within CSW01_00795 at 147.765 kb on + strand, within CSW01_00795 at 147.765 kb on + strand, within CSW01_00795 at 147.765 kb on + strand, within CSW01_00795 at 147.765 kb on + strand, within CSW01_00795 at 147.765 kb on + strand, within CSW01_00795 at 147.773 kb on - strand, within CSW01_00795 at 147.773 kb on - strand, within CSW01_00795 at 147.773 kb on - strand, within CSW01_00795 at 147.773 kb on - strand, within CSW01_00795 at 147.773 kb on - strand, within CSW01_00795 at 147.773 kb on - strand, within CSW01_00795 at 147.798 kb on + strand, within CSW01_00795 at 147.806 kb on - strand, within CSW01_00795 at 147.832 kb on + strand, within CSW01_00795 at 147.832 kb on + strand, within CSW01_00795 at 147.862 kb on - strand, within CSW01_00795 at 148.003 kb on + strand, within CSW01_00795 at 148.021 kb on - strand, within CSW01_00795 at 148.041 kb on - strand, within CSW01_00795 at 148.045 kb on - strand, within CSW01_00795 at 148.053 kb on - strand, within CSW01_00795 at 148.076 kb on - strand, within CSW01_00795 at 148.168 kb on + strand, within CSW01_00795
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_18HR_ZN20B remove 144,435 + CSW01_00785 0.51 -0.4 144,435 + CSW01_00785 0.51 +0.8 144,443 - CSW01_00785 0.52 +0.4 144,443 - CSW01_00785 0.52 +1.0 144,454 + CSW01_00785 0.53 +0.4 144,455 - CSW01_00785 0.53 +1.7 144,526 + CSW01_00785 0.60 -1.2 144,526 + CSW01_00785 0.60 +0.5 144,527 + CSW01_00785 0.60 +0.4 144,535 - CSW01_00785 0.60 -0.0 144,535 - CSW01_00785 0.60 -0.2 144,553 + CSW01_00785 0.62 +0.9 144,561 - CSW01_00785 0.63 -0.1 144,592 + CSW01_00785 0.66 -0.3 144,593 - CSW01_00785 0.66 +0.1 144,651 + CSW01_00785 0.71 +0.1 144,651 + CSW01_00785 0.71 -0.3 144,673 + CSW01_00785 0.73 -0.8 144,673 + CSW01_00785 0.73 -0.6 144,673 + CSW01_00785 0.73 +0.8 144,673 + CSW01_00785 0.73 -0.0 144,673 + CSW01_00785 0.73 -0.3 144,673 + CSW01_00785 0.73 +0.2 144,673 + CSW01_00785 0.73 +0.1 144,673 + CSW01_00785 0.73 +0.2 144,673 + CSW01_00785 0.73 +0.4 144,673 + CSW01_00785 0.73 +0.5 144,673 + CSW01_00785 0.73 +0.8 144,673 + CSW01_00785 0.73 +1.6 144,673 + CSW01_00785 0.73 +0.2 144,678 + CSW01_00785 0.73 -0.3 144,681 - CSW01_00785 0.74 +0.5 144,681 - CSW01_00785 0.74 +0.2 144,681 - CSW01_00785 0.74 +0.5 144,681 - CSW01_00785 0.74 +0.1 144,753 + CSW01_00785 0.80 -0.1 144,868 + +0.0 144,868 + +0.1 144,874 + +1.5 144,879 + +0.5 144,887 - +0.3 144,887 - +0.3 144,929 + -0.6 144,936 + +0.8 144,954 - +0.8 144,954 - +0.6 145,071 + +0.2 145,071 + +1.2 145,071 + +0.6 145,071 + +0.6 145,077 + +0.3 145,079 - -0.3 145,079 - -0.5 145,079 - -0.6 145,079 - +0.4 145,086 - +0.3 145,097 + +0.0 145,148 + -0.0 145,198 + +0.3 145,211 - +1.2 145,277 + -0.6 145,282 + +0.5 145,285 - +0.8 145,295 + +0.2 145,317 + -0.1 145,317 + +1.6 145,317 + -0.5 145,319 + +0.4 145,319 + +1.4 145,325 - +2.8 145,325 - +0.3 145,327 + -0.1 145,327 - +1.2 145,330 + +1.1 145,338 - -0.0 145,338 - +0.7 145,348 - -1.7 145,356 + +0.6 145,361 + -2.2 145,404 - +2.1 145,414 + -0.0 145,505 - -1.8 145,538 - +0.1 145,561 - CSW01_00790 0.10 +1.2 145,561 - CSW01_00790 0.10 -0.8 145,601 - CSW01_00790 0.13 +0.5 145,644 + CSW01_00790 0.15 +0.3 145,739 + CSW01_00790 0.20 +0.1 145,739 + CSW01_00790 0.20 -2.6 145,800 - CSW01_00790 0.23 -0.2 145,800 - CSW01_00790 0.23 -0.7 145,827 + CSW01_00790 0.25 +1.0 145,837 + CSW01_00790 0.25 +0.3 145,840 + CSW01_00790 0.26 +0.8 145,864 + CSW01_00790 0.27 -0.0 145,874 + CSW01_00790 0.27 +0.4 145,877 - CSW01_00790 0.28 +0.9 145,882 - CSW01_00790 0.28 +0.6 145,882 - CSW01_00790 0.28 +0.4 145,896 - CSW01_00790 0.29 +0.2 145,932 + CSW01_00790 0.31 -0.5 145,979 - CSW01_00790 0.33 +0.3 145,980 - CSW01_00790 0.33 +0.5 146,028 - CSW01_00790 0.36 +0.4 146,034 - CSW01_00790 0.36 -0.4 146,069 + CSW01_00790 0.38 +1.2 146,077 - CSW01_00790 0.38 +0.2 146,077 - CSW01_00790 0.38 +0.5 146,077 - CSW01_00790 0.38 +0.3 146,077 - CSW01_00790 0.38 -0.2 146,077 - CSW01_00790 0.38 -0.0 146,126 + CSW01_00790 0.41 +0.9 146,192 + CSW01_00790 0.45 +0.5 146,192 + CSW01_00790 0.45 -0.1 146,200 - CSW01_00790 0.45 +0.6 146,200 - CSW01_00790 0.45 +0.8 146,200 - CSW01_00790 0.45 -0.3 146,200 - CSW01_00790 0.45 +1.1 146,252 + CSW01_00790 0.48 -0.1 146,260 - CSW01_00790 0.48 +0.8 146,264 + CSW01_00790 0.49 +1.2 146,264 + CSW01_00790 0.49 +0.7 146,295 - CSW01_00790 0.50 +1.0 146,296 + CSW01_00790 0.50 +0.9 146,296 + CSW01_00790 0.50 -0.2 146,296 + CSW01_00790 0.50 -0.7 146,364 + CSW01_00790 0.54 +0.3 146,364 + CSW01_00790 0.54 -0.9 146,364 + CSW01_00790 0.54 +0.6 146,374 + CSW01_00790 0.55 -0.4 146,374 + CSW01_00790 0.55 -0.1 146,374 + CSW01_00790 0.55 +2.2 146,423 + CSW01_00790 0.57 +0.8 146,423 + CSW01_00790 0.57 +0.6 146,431 - CSW01_00790 0.58 +0.2 146,474 + CSW01_00790 0.60 -0.9 146,485 + CSW01_00790 0.61 +0.2 146,492 - CSW01_00790 0.61 -0.8 146,492 - CSW01_00790 0.61 -0.1 146,538 + CSW01_00790 0.64 -0.5 146,546 - CSW01_00790 0.64 +1.0 146,546 - CSW01_00790 0.64 -0.4 146,570 - CSW01_00790 0.65 +0.8 146,577 - CSW01_00790 0.66 +0.6 146,592 + CSW01_00790 0.67 +0.1 146,592 + CSW01_00790 0.67 +0.1 146,592 + CSW01_00790 0.67 +0.9 146,600 - CSW01_00790 0.67 +0.6 146,671 + CSW01_00790 0.71 +0.1 146,676 + CSW01_00790 0.71 -0.4 146,676 + CSW01_00790 0.71 +0.2 146,679 - CSW01_00790 0.71 +0.9 146,684 - CSW01_00790 0.72 -0.4 146,684 - CSW01_00790 0.72 +1.0 146,754 + CSW01_00790 0.75 -0.0 146,793 + CSW01_00790 0.77 -2.7 146,822 - CSW01_00790 0.79 +1.0 146,827 - CSW01_00790 0.79 +0.2 146,847 + CSW01_00790 0.80 -0.7 146,847 + CSW01_00790 0.80 +0.1 146,858 + CSW01_00790 0.81 -0.3 146,858 + CSW01_00790 0.81 +1.2 146,865 - CSW01_00790 0.81 +0.8 146,866 - CSW01_00790 0.81 -0.3 146,871 - CSW01_00790 0.82 -0.6 146,902 + CSW01_00790 0.83 +1.0 146,909 + CSW01_00790 0.84 -0.1 146,910 - CSW01_00790 0.84 +1.6 146,914 + CSW01_00790 0.84 -0.1 146,917 - CSW01_00790 0.84 +0.0 146,922 - CSW01_00790 0.84 +0.7 146,945 + CSW01_00790 0.86 +0.3 146,953 - CSW01_00790 0.86 +0.0 146,991 + CSW01_00790 0.88 +0.6 147,003 + CSW01_00790 0.89 +0.4 147,003 + CSW01_00790 0.89 +0.5 147,003 + CSW01_00790 0.89 -0.2 147,003 + CSW01_00790 0.89 +1.2 147,003 + CSW01_00790 0.89 -0.6 147,011 + CSW01_00790 0.89 +0.6 147,011 - CSW01_00790 0.89 +0.1 147,011 - CSW01_00790 0.89 +0.1 147,025 - -0.1 147,025 - -1.2 147,025 - -0.3 147,042 - +0.2 147,092 + +0.5 147,100 - -0.0 147,152 + +1.6 147,208 - +0.0 147,216 - +0.1 147,290 + +1.1 147,304 + +0.6 147,311 + +0.5 147,319 + +0.5 147,319 + -0.4 147,321 + +2.3 147,327 - +0.6 147,329 + -0.8 147,329 + +0.1 147,329 + +0.6 147,331 + -0.2 147,337 - +0.2 147,339 - +0.4 147,449 + CSW01_00795 0.11 +0.1 147,462 - CSW01_00795 0.11 +0.4 147,467 - CSW01_00795 0.12 +0.9 147,477 - CSW01_00795 0.12 +0.8 147,482 - CSW01_00795 0.13 +0.4 147,558 - CSW01_00795 0.17 +0.4 147,558 - CSW01_00795 0.17 -0.7 147,598 + CSW01_00795 0.20 +0.3 147,639 - CSW01_00795 0.22 +0.3 147,652 + CSW01_00795 0.23 +0.1 147,660 - CSW01_00795 0.24 +0.5 147,734 + CSW01_00795 0.28 +0.6 147,765 + CSW01_00795 0.30 -0.1 147,765 + CSW01_00795 0.30 -0.2 147,765 + CSW01_00795 0.30 +0.2 147,765 + CSW01_00795 0.30 -0.4 147,765 + CSW01_00795 0.30 -0.2 147,765 + CSW01_00795 0.30 +0.3 147,773 - CSW01_00795 0.31 +0.4 147,773 - CSW01_00795 0.31 +1.8 147,773 - CSW01_00795 0.31 -0.6 147,773 - CSW01_00795 0.31 +0.5 147,773 - CSW01_00795 0.31 +0.2 147,773 - CSW01_00795 0.31 -0.9 147,798 + CSW01_00795 0.32 -1.8 147,806 - CSW01_00795 0.33 +0.7 147,832 + CSW01_00795 0.34 +0.4 147,832 + CSW01_00795 0.34 -1.0 147,862 - CSW01_00795 0.36 +0.8 148,003 + CSW01_00795 0.45 -0.1 148,021 - CSW01_00795 0.46 -1.0 148,041 - CSW01_00795 0.47 +0.1 148,045 - CSW01_00795 0.48 +1.3 148,053 - CSW01_00795 0.48 +0.4 148,076 - CSW01_00795 0.50 -0.3 148,168 + CSW01_00795 0.55 -0.7
Or see this region's nucleotide sequence