Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22320

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22315 and AO356_22320 are separated by 241 nucleotidesAO356_22320 and AO356_22325 are separated by 267 nucleotidesAO356_22325 and AO356_22330 overlap by 17 nucleotidesAO356_22330 and AO356_22335 are separated by 7 nucleotides AO356_22315: AO356_22315 - lactate permease, at 4,990,188 to 4,991,951 _22315 AO356_22320: AO356_22320 - thioesterase, at 4,992,193 to 4,992,744 _22320 AO356_22325: AO356_22325 - reactive intermediate/imine deaminase, at 4,993,012 to 4,993,392 _22325 AO356_22330: AO356_22330 - hypothetical protein, at 4,993,376 to 4,993,612 _22330 AO356_22335: AO356_22335 - LysR family transcriptional regulator, at 4,993,620 to 4,994,573 _22335 Position (kb) 4992 4993Strain fitness (log2 ratio) -2 -1 0 1 2at 4991.224 kb on + strand, within AO356_22315at 4991.225 kb on - strand, within AO356_22315at 4991.225 kb on - strand, within AO356_22315at 4991.918 kb on + strandat 4991.932 kb on + strandat 4991.932 kb on + strandat 4991.933 kb on - strandat 4991.933 kb on - strandat 4991.933 kb on - strandat 4991.933 kb on - strandat 4991.970 kb on - strandat 4991.970 kb on - strandat 4992.012 kb on - strandat 4992.012 kb on - strandat 4992.012 kb on - strandat 4992.012 kb on - strandat 4992.012 kb on - strandat 4992.012 kb on - strandat 4992.012 kb on - strandat 4992.013 kb on + strandat 4992.117 kb on + strandat 4992.118 kb on - strandat 4992.178 kb on + strandat 4992.178 kb on + strandat 4992.178 kb on + strandat 4992.569 kb on + strand, within AO356_22320at 4992.569 kb on + strand, within AO356_22320at 4992.569 kb on + strand, within AO356_22320at 4992.570 kb on - strand, within AO356_22320at 4992.570 kb on - strand, within AO356_22320at 4992.570 kb on - strand, within AO356_22320at 4992.602 kb on + strand, within AO356_22320at 4992.602 kb on + strand, within AO356_22320at 4992.602 kb on + strand, within AO356_22320at 4992.779 kb on + strandat 4992.779 kb on + strandat 4992.779 kb on + strandat 4992.802 kb on + strandat 4992.991 kb on - strandat 4993.121 kb on + strand, within AO356_22325at 4993.121 kb on + strand, within AO356_22325at 4993.163 kb on + strand, within AO356_22325at 4993.163 kb on + strand, within AO356_22325at 4993.163 kb on + strand, within AO356_22325at 4993.164 kb on - strand, within AO356_22325at 4993.164 kb on - strand, within AO356_22325at 4993.164 kb on - strand, within AO356_22325at 4993.164 kb on - strand, within AO356_22325at 4993.368 kb on + strandat 4993.369 kb on - strandat 4993.369 kb on - strandat 4993.369 kb on - strandat 4993.369 kb on - strandat 4993.434 kb on + strand, within AO356_22330at 4993.434 kb on + strand, within AO356_22330at 4993.477 kb on - strand, within AO356_22330at 4993.477 kb on - strand, within AO356_22330at 4993.619 kb on - strandat 4993.676 kb on - strandat 4993.744 kb on + strand, within AO356_22335at 4993.744 kb on + strand, within AO356_22335

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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4,991,224 + AO356_22315 0.59 +0.2
4,991,225 - AO356_22315 0.59 -0.2
4,991,225 - AO356_22315 0.59 +0.5
4,991,918 + -0.4
4,991,932 + +0.5
4,991,932 + +0.1
4,991,933 - +0.2
4,991,933 - +0.2
4,991,933 - +0.8
4,991,933 - +0.9
4,991,970 - -0.7
4,991,970 - +0.3
4,992,012 - +0.0
4,992,012 - -0.9
4,992,012 - -0.4
4,992,012 - +0.2
4,992,012 - -1.0
4,992,012 - +2.7
4,992,012 - +0.8
4,992,013 + +0.4
4,992,117 + +0.3
4,992,118 - -0.0
4,992,178 + -1.3
4,992,178 + -0.0
4,992,178 + +0.7
4,992,569 + AO356_22320 0.68 +1.1
4,992,569 + AO356_22320 0.68 +0.5
4,992,569 + AO356_22320 0.68 +0.7
4,992,570 - AO356_22320 0.68 -0.5
4,992,570 - AO356_22320 0.68 +1.3
4,992,570 - AO356_22320 0.68 +0.7
4,992,602 + AO356_22320 0.74 +0.6
4,992,602 + AO356_22320 0.74 -0.0
4,992,602 + AO356_22320 0.74 -0.1
4,992,779 + -0.1
4,992,779 + -0.4
4,992,779 + +1.3
4,992,802 + +0.5
4,992,991 - +0.6
4,993,121 + AO356_22325 0.29 +0.6
4,993,121 + AO356_22325 0.29 +0.5
4,993,163 + AO356_22325 0.40 +0.1
4,993,163 + AO356_22325 0.40 -0.7
4,993,163 + AO356_22325 0.40 -1.4
4,993,164 - AO356_22325 0.40 -0.3
4,993,164 - AO356_22325 0.40 -1.0
4,993,164 - AO356_22325 0.40 -1.6
4,993,164 - AO356_22325 0.40 -2.0
4,993,368 + +0.3
4,993,369 - +1.3
4,993,369 - +0.4
4,993,369 - -1.0
4,993,369 - -0.6
4,993,434 + AO356_22330 0.24 -0.3
4,993,434 + AO356_22330 0.24 +1.8
4,993,477 - AO356_22330 0.43 +1.1
4,993,477 - AO356_22330 0.43 +0.5
4,993,619 - -1.0
4,993,676 - -0.0
4,993,744 + AO356_22335 0.13 +0.5
4,993,744 + AO356_22335 0.13 +0.5

Or see this region's nucleotide sequence