Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19075

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19065 and AO356_19070 are separated by 26 nucleotidesAO356_19070 and AO356_19075 are separated by 138 nucleotidesAO356_19075 and AO356_19080 are separated by 380 nucleotides AO356_19065: AO356_19065 - nucleoside triphosphate hydrolase, at 4,285,723 to 4,286,556 _19065 AO356_19070: AO356_19070 - nucleoprotein/polynucleotide-associated enzyme, at 4,286,583 to 4,287,122 _19070 AO356_19075: AO356_19075 - hypothetical protein, at 4,287,261 to 4,287,455 _19075 AO356_19080: AO356_19080 - dehydrogenase, at 4,287,836 to 4,288,549 _19080 Position (kb) 4287 4288Strain fitness (log2 ratio) -2 -1 0 1at 4286.568 kb on - strandat 4286.568 kb on - strandat 4286.568 kb on - strandat 4286.576 kb on - strandat 4286.576 kb on - strandat 4286.576 kb on - strandat 4286.576 kb on - strandat 4286.871 kb on + strand, within AO356_19070at 4286.872 kb on - strand, within AO356_19070at 4286.872 kb on - strand, within AO356_19070at 4286.872 kb on - strand, within AO356_19070at 4286.872 kb on - strand, within AO356_19070at 4286.872 kb on - strand, within AO356_19070at 4286.872 kb on - strand, within AO356_19070at 4286.872 kb on - strand, within AO356_19070at 4286.874 kb on + strand, within AO356_19070at 4286.874 kb on + strand, within AO356_19070at 4286.874 kb on + strand, within AO356_19070at 4286.874 kb on + strand, within AO356_19070at 4286.874 kb on + strand, within AO356_19070at 4286.874 kb on + strand, within AO356_19070at 4286.875 kb on - strand, within AO356_19070at 4286.875 kb on - strand, within AO356_19070at 4286.875 kb on - strand, within AO356_19070at 4286.875 kb on - strand, within AO356_19070at 4286.875 kb on - strand, within AO356_19070at 4286.875 kb on - strand, within AO356_19070at 4286.918 kb on + strand, within AO356_19070at 4286.919 kb on - strand, within AO356_19070at 4286.919 kb on - strand, within AO356_19070at 4286.919 kb on - strand, within AO356_19070at 4287.120 kb on + strandat 4287.120 kb on + strandat 4287.120 kb on + strandat 4287.120 kb on + strandat 4287.121 kb on - strandat 4287.190 kb on + strandat 4287.190 kb on + strandat 4287.190 kb on + strandat 4287.191 kb on - strandat 4287.191 kb on - strandat 4287.191 kb on - strandat 4287.216 kb on - strandat 4287.216 kb on - strandat 4287.217 kb on + strandat 4287.217 kb on + strandat 4287.218 kb on - strandat 4287.218 kb on - strandat 4287.218 kb on - strandat 4287.218 kb on - strandat 4287.319 kb on + strand, within AO356_19075at 4287.319 kb on + strand, within AO356_19075at 4287.319 kb on + strand, within AO356_19075at 4287.319 kb on + strand, within AO356_19075at 4287.319 kb on + strand, within AO356_19075at 4287.319 kb on + strand, within AO356_19075at 4287.319 kb on + strand, within AO356_19075at 4287.319 kb on + strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.320 kb on - strand, within AO356_19075at 4287.323 kb on + strand, within AO356_19075at 4287.324 kb on - strand, within AO356_19075at 4287.324 kb on - strand, within AO356_19075at 4287.324 kb on - strand, within AO356_19075at 4287.324 kb on - strand, within AO356_19075at 4287.441 kb on + strandat 4287.442 kb on - strandat 4287.478 kb on - strandat 4287.478 kb on - strandat 4287.478 kb on - strandat 4287.508 kb on + strandat 4287.510 kb on + strandat 4287.510 kb on + strandat 4287.511 kb on - strandat 4287.528 kb on + strandat 4287.528 kb on + strandat 4287.532 kb on + strandat 4287.532 kb on + strandat 4287.574 kb on + strandat 4287.575 kb on - strandat 4287.575 kb on - strandat 4287.649 kb on + strandat 4287.649 kb on + strandat 4287.649 kb on + strandat 4287.650 kb on - strandat 4287.766 kb on + strandat 4287.766 kb on + strandat 4287.766 kb on + strandat 4287.766 kb on + strandat 4287.766 kb on + strandat 4287.766 kb on + strandat 4287.766 kb on + strandat 4287.793 kb on + strandat 4287.794 kb on - strandat 4287.891 kb on + strandat 4287.891 kb on + strandat 4287.891 kb on + strandat 4287.892 kb on - strandat 4287.936 kb on + strand, within AO356_19080at 4287.937 kb on - strand, within AO356_19080at 4287.937 kb on - strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.071 kb on + strand, within AO356_19080at 4288.072 kb on - strand, within AO356_19080at 4288.072 kb on - strand, within AO356_19080at 4288.072 kb on - strand, within AO356_19080at 4288.072 kb on - strand, within AO356_19080at 4288.072 kb on - strand, within AO356_19080at 4288.072 kb on - strand, within AO356_19080at 4288.072 kb on - strand, within AO356_19080at 4288.072 kb on - strand, within AO356_19080at 4288.072 kb on - strand, within AO356_19080at 4288.075 kb on + strand, within AO356_19080at 4288.104 kb on + strand, within AO356_19080at 4288.104 kb on + strand, within AO356_19080at 4288.104 kb on + strand, within AO356_19080at 4288.104 kb on + strand, within AO356_19080at 4288.104 kb on + strand, within AO356_19080at 4288.105 kb on - strand, within AO356_19080at 4288.105 kb on - strand, within AO356_19080at 4288.105 kb on - strand, within AO356_19080at 4288.105 kb on - strand, within AO356_19080at 4288.155 kb on + strand, within AO356_19080at 4288.156 kb on - strand, within AO356_19080at 4288.156 kb on - strand, within AO356_19080at 4288.296 kb on + strand, within AO356_19080at 4288.297 kb on - strand, within AO356_19080at 4288.297 kb on - strand, within AO356_19080

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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4,286,568 - +0.3
4,286,568 - +0.1
4,286,568 - +0.4
4,286,576 - -0.7
4,286,576 - -0.1
4,286,576 - -0.7
4,286,576 - +0.4
4,286,871 + AO356_19070 0.53 -0.4
4,286,872 - AO356_19070 0.54 +0.1
4,286,872 - AO356_19070 0.54 +0.3
4,286,872 - AO356_19070 0.54 -2.1
4,286,872 - AO356_19070 0.54 -0.7
4,286,872 - AO356_19070 0.54 +0.4
4,286,872 - AO356_19070 0.54 +0.7
4,286,872 - AO356_19070 0.54 +0.6
4,286,874 + AO356_19070 0.54 +0.2
4,286,874 + AO356_19070 0.54 -0.2
4,286,874 + AO356_19070 0.54 +1.2
4,286,874 + AO356_19070 0.54 +0.4
4,286,874 + AO356_19070 0.54 +0.7
4,286,874 + AO356_19070 0.54 -0.3
4,286,875 - AO356_19070 0.54 -0.0
4,286,875 - AO356_19070 0.54 -0.1
4,286,875 - AO356_19070 0.54 +1.0
4,286,875 - AO356_19070 0.54 +0.4
4,286,875 - AO356_19070 0.54 -0.7
4,286,875 - AO356_19070 0.54 -0.1
4,286,918 + AO356_19070 0.62 -0.8
4,286,919 - AO356_19070 0.62 +0.9
4,286,919 - AO356_19070 0.62 +0.5
4,286,919 - AO356_19070 0.62 +0.6
4,287,120 + -0.3
4,287,120 + -0.1
4,287,120 + +0.9
4,287,120 + +0.5
4,287,121 - -0.2
4,287,190 + +0.6
4,287,190 + +0.7
4,287,190 + +0.1
4,287,191 - -0.1
4,287,191 - +0.4
4,287,191 - -0.3
4,287,216 - -0.5
4,287,216 - +1.1
4,287,217 + +0.0
4,287,217 + +0.5
4,287,218 - +0.5
4,287,218 - +0.3
4,287,218 - +0.3
4,287,218 - +0.0
4,287,319 + AO356_19075 0.30 +0.1
4,287,319 + AO356_19075 0.30 -0.5
4,287,319 + AO356_19075 0.30 -0.6
4,287,319 + AO356_19075 0.30 +0.6
4,287,319 + AO356_19075 0.30 -0.6
4,287,319 + AO356_19075 0.30 +0.6
4,287,319 + AO356_19075 0.30 +0.0
4,287,319 + AO356_19075 0.30 +0.9
4,287,320 - AO356_19075 0.30 -0.1
4,287,320 - AO356_19075 0.30 +0.9
4,287,320 - AO356_19075 0.30 -1.0
4,287,320 - AO356_19075 0.30 +0.4
4,287,320 - AO356_19075 0.30 -0.8
4,287,320 - AO356_19075 0.30 -1.2
4,287,320 - AO356_19075 0.30 -0.1
4,287,320 - AO356_19075 0.30 -0.0
4,287,320 - AO356_19075 0.30 +0.4
4,287,320 - AO356_19075 0.30 +0.0
4,287,320 - AO356_19075 0.30 +0.2
4,287,320 - AO356_19075 0.30 -0.1
4,287,323 + AO356_19075 0.32 -0.3
4,287,324 - AO356_19075 0.32 -0.3
4,287,324 - AO356_19075 0.32 -0.0
4,287,324 - AO356_19075 0.32 +0.0
4,287,324 - AO356_19075 0.32 +0.4
4,287,441 + +0.4
4,287,442 - +0.0
4,287,478 - +0.3
4,287,478 - +1.0
4,287,478 - +0.3
4,287,508 + +0.8
4,287,510 + +0.7
4,287,510 + +0.4
4,287,511 - +0.2
4,287,528 + -0.2
4,287,528 + -0.0
4,287,532 + -0.8
4,287,532 + +1.0
4,287,574 + -0.3
4,287,575 - -0.4
4,287,575 - +0.2
4,287,649 + -0.1
4,287,649 + +1.4
4,287,649 + +0.4
4,287,650 - +0.4
4,287,766 + -0.7
4,287,766 + +0.3
4,287,766 + +1.5
4,287,766 + +0.1
4,287,766 + -0.2
4,287,766 + +0.4
4,287,766 + +0.6
4,287,793 + +0.1
4,287,794 - -0.1
4,287,891 + -0.7
4,287,891 + +1.6
4,287,891 + -0.2
4,287,892 - +0.4
4,287,936 + AO356_19080 0.14 +0.4
4,287,937 - AO356_19080 0.14 +0.4
4,287,937 - AO356_19080 0.14 +0.3
4,288,071 + AO356_19080 0.33 -0.3
4,288,071 + AO356_19080 0.33 +0.0
4,288,071 + AO356_19080 0.33 -0.1
4,288,071 + AO356_19080 0.33 +0.2
4,288,071 + AO356_19080 0.33 +0.9
4,288,071 + AO356_19080 0.33 -1.7
4,288,071 + AO356_19080 0.33 -0.2
4,288,071 + AO356_19080 0.33 +0.6
4,288,071 + AO356_19080 0.33 +0.3
4,288,071 + AO356_19080 0.33 +0.1
4,288,071 + AO356_19080 0.33 +0.3
4,288,071 + AO356_19080 0.33 +1.3
4,288,071 + AO356_19080 0.33 +0.5
4,288,071 + AO356_19080 0.33 +0.7
4,288,071 + AO356_19080 0.33 -0.4
4,288,072 - AO356_19080 0.33 -0.2
4,288,072 - AO356_19080 0.33 +0.7
4,288,072 - AO356_19080 0.33 +0.1
4,288,072 - AO356_19080 0.33 -0.7
4,288,072 - AO356_19080 0.33 -0.4
4,288,072 - AO356_19080 0.33 -1.1
4,288,072 - AO356_19080 0.33 +0.0
4,288,072 - AO356_19080 0.33 -0.1
4,288,072 - AO356_19080 0.33 +0.0
4,288,075 + AO356_19080 0.33 -0.3
4,288,104 + AO356_19080 0.38 +1.4
4,288,104 + AO356_19080 0.38 +0.3
4,288,104 + AO356_19080 0.38 +0.9
4,288,104 + AO356_19080 0.38 +0.6
4,288,104 + AO356_19080 0.38 +0.1
4,288,105 - AO356_19080 0.38 +0.6
4,288,105 - AO356_19080 0.38 +0.1
4,288,105 - AO356_19080 0.38 +0.0
4,288,105 - AO356_19080 0.38 +0.2
4,288,155 + AO356_19080 0.45 -0.8
4,288,156 - AO356_19080 0.45 +1.1
4,288,156 - AO356_19080 0.45 +0.0
4,288,296 + AO356_19080 0.64 +0.2
4,288,297 - AO356_19080 0.65 -0.8
4,288,297 - AO356_19080 0.65 -0.2

Or see this region's nucleotide sequence